Wall clock time and date at job start Tue Mar 31 2020 05:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86803 * 119.99904 * 2 1 4 4 H 1.48497 * 109.46976 * 269.99600 * 3 2 1 5 5 H 1.48503 * 109.46978 * 29.99953 * 3 2 1 6 6 H 1.48504 * 109.47017 * 149.99638 * 3 2 1 7 7 C 1.38636 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99863 * 0.02562 * 7 2 1 9 9 O 1.34817 * 120.00443 * 180.02562 * 7 2 1 10 10 C 1.35703 * 117.00381 * 185.05781 * 9 7 2 11 11 C 1.38999 * 119.94641 * 354.45132 * 10 9 7 12 12 C 1.37841 * 120.05156 * 180.02562 * 11 10 9 13 13 C 1.39439 * 119.94666 * 0.02562 * 12 11 10 14 14 C 1.48339 * 120.04980 * 180.02562 * 13 12 11 15 15 C 1.39880 * 119.95814 * 0.24677 * 14 13 12 16 16 C 1.36529 * 120.62931 * 180.24366 * 15 14 13 17 17 C 1.39074 * 120.22371 * 359.48756 * 16 15 14 18 18 O 1.34885 * 133.23679 * 180.25615 * 17 16 15 19 19 N 1.41336 * 109.36519 * 180.02562 * 18 17 16 20 20 C 1.29729 * 109.76431 * 359.97438 * 19 18 17 21 21 C 1.40520 * 119.72207 * 0.27595 * 17 16 15 22 22 C 1.38808 * 119.95310 * 180.02562 * 14 13 12 23 23 C 1.39426 * 119.89591 * 0.26897 * 13 12 11 24 24 C 1.37846 * 119.94730 * 359.45117 * 23 13 12 25 25 H 0.96998 * 120.00020 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.97460 * 0.02562 * 11 10 9 27 27 H 1.07997 * 120.02693 * 180.02562 * 12 11 10 28 28 H 1.08000 * 119.68521 * 0.02562 * 15 14 13 29 29 H 1.08000 * 119.88465 * 179.76342 * 16 15 14 30 30 H 1.07992 * 126.30301 * 180.02562 * 20 19 18 31 31 H 1.07999 * 120.28740 * 0.03713 * 22 14 13 32 32 H 1.07998 * 120.02574 * 179.70084 * 23 13 12 33 33 H 1.07995 * 119.97220 * 180.26915 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5472 1.4402 0.7001 7 6 2.0088 -1.2006 0.0005 8 1 1.4688 -2.1359 0.0005 9 8 3.3570 -1.2007 0.0011 10 6 3.9732 -2.4051 -0.1050 11 6 3.2201 -3.5733 -0.0915 12 6 3.8437 -4.7979 -0.1986 13 6 5.2312 -4.8642 -0.3200 14 6 5.9047 -6.1808 -0.4360 15 6 5.1465 -7.3562 -0.4287 16 6 5.7525 -8.5755 -0.5296 17 6 7.1352 -8.6621 -0.6519 18 8 7.9891 -9.6994 -0.7713 19 7 9.3117 -9.2095 -0.8622 20 6 9.3045 -7.9136 -0.8040 21 6 7.9082 -7.4887 -0.6655 22 6 7.2861 -6.2444 -0.5562 23 6 5.9850 -3.6912 -0.3271 24 6 5.3564 -2.4687 -0.2256 25 1 -0.4850 0.8400 -0.0004 26 1 2.1454 -3.5215 0.0029 27 1 3.2582 -5.7053 -0.1885 28 1 4.0718 -7.2989 -0.3389 29 1 5.1558 -9.4756 -0.5189 30 1 10.1681 -7.2667 -0.8493 31 1 7.8744 -5.3387 -0.5651 32 1 7.0602 -3.7403 -0.4161 33 1 5.9395 -1.5597 -0.2354 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243590628.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:43 Heat of formation + Delta-G solvation = 65.691139 kcal Electronic energy + Delta-G solvation = -19740.346201 eV Core-core repulsion = 16506.596215 eV Total energy + Delta-G solvation = -3233.749987 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.084 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.79340 -39.49276 -38.17027 -36.30928 -33.90974 -32.60508 -31.38704 -31.03946 -30.06602 -27.82287 -25.46476 -23.79749 -23.01335 -22.37250 -21.48350 -20.70514 -18.15476 -17.72918 -17.55967 -17.06388 -16.01726 -15.64411 -14.78871 -14.62438 -14.52385 -14.04996 -13.94047 -13.90197 -13.73636 -13.05312 -12.74636 -12.53276 -12.42550 -12.28491 -11.84200 -11.51341 -11.46010 -11.44765 -11.06791 -10.92606 -10.71109 -10.25070 -9.53671 -9.22699 -9.07162 -8.71010 -8.47237 -7.17910 -6.56965 -4.22041 0.51399 0.87751 1.92712 1.98292 2.23318 2.39267 3.12861 3.16907 3.30336 3.58025 4.02513 4.11148 4.17428 4.43291 4.46781 4.66523 4.76557 4.95837 4.99426 5.15926 5.23409 5.38767 5.44635 5.55915 5.78237 5.94345 5.94518 6.01223 6.04934 6.31561 6.42368 6.46362 6.62093 6.89860 7.05825 7.07243 7.12422 7.41352 7.63728 7.86979 8.77046 9.37171 10.49776 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.048947 B = 0.003127 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.909425 B = 8951.705663 C = 9509.340741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.391 4.391 8 H 0.109 0.891 9 O -0.208 6.208 10 C 0.166 3.834 11 C -0.221 4.221 12 C -0.055 4.055 13 C -0.152 4.152 14 C -0.027 4.027 15 C -0.065 4.065 16 C -0.118 4.118 17 C 0.063 3.937 18 O -0.099 6.099 19 N -0.296 5.296 20 C 0.109 3.891 21 C -0.193 4.193 22 C -0.056 4.056 23 C -0.060 4.060 24 C -0.192 4.192 25 H 0.282 0.718 26 H 0.137 0.863 27 H 0.115 0.885 28 H 0.142 0.858 29 H 0.136 0.864 30 H 0.209 0.791 31 H 0.136 0.864 32 H 0.117 0.883 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.702 -11.005 -0.989 16.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.466 4.466 8 H 0.126 0.874 9 O -0.111 6.111 10 C 0.112 3.888 11 C -0.240 4.240 12 C -0.073 4.073 13 C -0.153 4.153 14 C -0.027 4.027 15 C -0.084 4.084 16 C -0.137 4.137 17 C 0.009 3.991 18 O -0.110 6.110 19 N -0.038 5.038 20 C -0.092 4.092 21 C -0.196 4.196 22 C -0.076 4.076 23 C -0.078 4.078 24 C -0.211 4.211 25 H 0.092 0.908 26 H 0.154 0.846 27 H 0.133 0.867 28 H 0.160 0.840 29 H 0.154 0.846 30 H 0.225 0.775 31 H 0.154 0.846 32 H 0.135 0.865 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.225 -11.814 -1.072 17.766 hybrid contribution -0.282 1.386 0.056 1.415 sum 12.943 -10.428 -1.016 16.653 Atomic orbital electron populations 1.69641 1.05647 1.28841 1.46691 1.24506 0.95063 0.99023 0.95350 0.86166 0.80360 0.81213 0.79124 1.19712 1.20609 1.18243 1.20820 0.76719 0.96821 1.52273 0.87351 1.83554 1.22834 1.25968 1.78791 1.19245 0.91738 0.85453 0.92354 1.21227 1.01327 0.91636 1.09843 1.20853 0.93021 0.96983 0.96420 1.18130 0.93111 0.90668 1.13353 1.18679 0.92020 0.93006 0.99011 1.21006 1.00729 0.90496 0.96172 1.19659 0.89013 0.99175 1.05867 1.20284 0.92967 0.87049 0.98756 1.89114 1.12692 1.28143 1.81070 1.79786 0.93531 1.11844 1.18606 1.26071 0.97172 0.93168 0.92759 1.20754 0.91170 0.95247 1.12450 1.20721 0.93850 0.95433 0.97599 1.20677 0.98415 0.91046 0.97662 1.20144 0.91905 0.97874 1.11151 0.90775 0.84559 0.86711 0.84044 0.84597 0.77474 0.84592 0.86473 0.86150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.08 13.96 55.48 0.77 -23.30 16 2 C 0.07 1.74 5.49 -17.52 -0.10 1.64 16 3 Si 0.91 20.58 28.62 -169.99 -4.86 15.72 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.39 -10.41 9.94 30.88 0.31 -10.11 16 8 H 0.11 2.93 5.42 -52.48 -0.28 2.65 16 9 O -0.21 -5.14 8.58 0.23 0.00 -5.14 16 10 C 0.17 3.53 6.65 -39.02 -0.26 3.27 16 11 C -0.22 -4.36 9.15 -39.44 -0.36 -4.72 16 12 C -0.05 -0.89 9.42 -39.28 -0.37 -1.26 16 13 C -0.15 -2.30 5.88 -104.85 -0.62 -2.92 16 14 C -0.03 -0.35 5.87 -104.91 -0.62 -0.96 16 15 C -0.06 -0.75 9.35 -39.58 -0.37 -1.12 16 16 C -0.12 -1.32 10.00 -39.89 -0.40 -1.72 16 17 C 0.06 0.81 7.48 -38.41 -0.29 0.52 16 18 O -0.10 -1.38 12.06 7.51 0.09 -1.29 16 19 N -0.30 -3.73 12.81 31.95 0.41 -3.32 16 20 C 0.11 1.07 12.32 -15.06 -0.19 0.88 16 21 C -0.19 -2.26 6.34 -105.17 -0.67 -2.92 16 22 C -0.06 -0.65 9.48 -38.89 -0.37 -1.02 16 23 C -0.06 -0.91 9.41 -39.28 -0.37 -1.28 16 24 C -0.19 -3.44 9.98 -39.44 -0.39 -3.83 16 25 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.14 2.82 5.62 -52.49 -0.30 2.53 16 27 H 0.12 1.53 6.17 -52.49 -0.32 1.21 16 28 H 0.14 1.39 6.16 -52.49 -0.32 1.07 16 29 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.21 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.14 1.28 6.19 -52.49 -0.32 0.95 16 32 H 0.12 1.38 6.19 -52.49 -0.32 1.06 16 33 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 292.36 15.07 4.41 4.41 Total: -1.00 -29.59 292.36 -6.52 -36.11 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -2.28 Total: 2.37 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -5.05 Total: -25.54 kcal Atomic # 7 Polarization: -27.81 SS G_CDS: 1.18 Total: -26.63 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: 0.09 Total: -6.43 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.86 Total: 15.72 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.59 -6.52 -36.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590628.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.796 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds