Wall clock time and date at job start Tue Mar 31 2020 05:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86804 * 119.99975 * 2 1 4 4 H 1.48503 * 109.46963 * 270.00083 * 3 2 1 5 5 H 1.48503 * 109.46805 * 29.99621 * 3 2 1 6 6 H 1.48491 * 109.47221 * 149.99840 * 3 2 1 7 7 C 1.38640 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00257 * 179.97438 * 7 2 1 9 9 O 1.34821 * 119.99571 * 359.97438 * 7 2 1 10 10 C 1.35701 * 116.99659 * 185.05615 * 9 7 2 11 11 C 1.39004 * 119.94541 * 174.43158 * 10 9 7 12 12 C 1.37820 * 120.06004 * 180.02562 * 11 10 9 13 13 C 1.39474 * 119.94128 * 359.97438 * 12 11 10 14 14 C 1.48245 * 120.05570 * 179.97438 * 13 12 11 15 15 C 1.39026 * 120.16006 * 309.72612 * 14 13 12 16 16 C 1.38495 * 120.46066 * 179.72061 * 15 14 13 17 17 C 1.37750 * 120.51382 * 0.55736 * 16 15 14 18 18 C 1.39768 * 119.94529 * 359.71801 * 17 16 15 19 19 C 1.46592 * 133.64544 * 179.97438 * 18 17 16 20 20 N 1.29755 * 107.40063 * 180.02562 * 19 18 17 21 21 O 1.41349 * 109.69853 * 0.02562 * 20 19 18 22 22 C 1.34745 * 109.33951 * 359.97438 * 21 20 19 23 23 C 1.39476 * 119.89040 * 359.97438 * 13 12 11 24 24 C 1.37821 * 119.94076 * 0.02562 * 23 13 12 25 25 H 0.97004 * 120.00320 * 0.02562 * 1 2 3 26 26 H 1.08008 * 119.96792 * 0.02562 * 11 10 9 27 27 H 1.08003 * 120.03147 * 180.27733 * 12 11 10 28 28 H 1.08001 * 119.76820 * 359.97438 * 15 14 13 29 29 H 1.07997 * 119.74645 * 180.25786 * 16 15 14 30 30 H 1.08003 * 120.02697 * 179.75258 * 17 16 15 31 31 H 1.08006 * 126.29977 * 359.97438 * 19 18 17 32 32 H 1.08002 * 120.02912 * 179.97438 * 23 13 12 33 33 H 1.08006 * 119.97170 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4403 0.7000 7 6 2.0089 -1.2006 0.0005 8 1 3.0888 -1.2006 0.0001 9 8 1.3347 -2.3682 0.0016 10 6 2.0698 -3.5038 0.1086 11 6 1.4333 -4.7333 0.2326 12 6 2.1775 -5.8881 0.3420 13 6 3.5706 -5.8224 0.3277 14 6 4.3737 -7.0629 0.4458 15 6 4.1115 -7.9703 1.4660 16 6 4.8540 -9.1339 1.5787 17 6 5.8704 -9.4040 0.6890 18 6 6.1542 -8.5024 -0.3406 19 6 7.1392 -8.4837 -1.4262 20 7 6.9543 -7.3898 -2.0991 21 8 5.8903 -6.6540 -1.5294 22 6 5.4038 -7.3236 -0.4660 23 6 4.2070 -4.5877 0.2021 24 6 3.4581 -3.4358 0.0930 25 1 -0.4851 0.8400 -0.0004 26 1 0.3544 -4.7836 0.2433 27 1 1.6824 -6.8436 0.4339 28 1 3.3205 -7.7683 2.1731 29 1 4.6377 -9.8327 2.3731 30 1 6.4471 -10.3119 0.7866 31 1 7.8826 -9.2407 -1.6282 32 1 5.2856 -4.5342 0.1911 33 1 3.9504 -2.4794 -0.0047 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243593355.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:06 Heat of formation + Delta-G solvation = 63.483153 kcal Electronic energy + Delta-G solvation = -20096.204558 eV Core-core repulsion = 16862.358826 eV Total energy + Delta-G solvation = -3233.845732 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.084 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.72180 -39.10910 -37.83675 -36.35166 -33.79035 -32.40839 -31.22862 -30.42373 -29.96777 -27.79051 -25.44275 -23.49660 -22.89413 -22.25072 -21.69783 -20.50875 -18.07778 -17.58655 -17.37532 -16.75154 -15.88550 -15.53641 -14.89489 -14.56771 -14.45766 -13.99904 -13.84303 -13.61782 -13.53120 -12.84126 -12.68955 -12.34620 -12.24463 -11.82728 -11.71796 -11.59356 -11.44923 -11.25645 -10.88925 -10.76373 -10.65536 -10.46978 -9.42768 -9.04918 -8.89825 -8.52529 -8.26542 -7.12847 -6.51776 -4.09163 0.52848 1.18897 1.89275 2.18723 2.31865 2.51911 3.10851 3.11702 3.16625 3.56281 3.92518 4.07997 4.25237 4.48029 4.58249 4.88841 5.02798 5.04519 5.19167 5.20711 5.30992 5.56930 5.63847 5.67234 5.83386 6.00336 6.13109 6.16415 6.26589 6.39416 6.55073 6.61134 6.84305 6.98588 7.13959 7.21629 7.30591 7.37137 7.72853 7.93424 8.93647 9.61617 10.65620 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.028828 B = 0.003766 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.045515 B = 7432.450523 C = 8067.848973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.171 6.171 10 C 0.161 3.839 11 C -0.194 4.194 12 C -0.052 4.052 13 C -0.168 4.168 14 C -0.006 4.006 15 C -0.068 4.068 16 C -0.143 4.143 17 C -0.059 4.059 18 C -0.202 4.202 19 C 0.102 3.898 20 N -0.293 5.293 21 O -0.082 6.082 22 C 0.088 3.912 23 C -0.042 4.042 24 C -0.233 4.233 25 H 0.271 0.729 26 H 0.121 0.879 27 H 0.115 0.885 28 H 0.140 0.860 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.207 0.793 32 H 0.107 0.893 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.657 -17.181 2.736 20.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.112 0.888 9 O -0.073 6.073 10 C 0.106 3.894 11 C -0.213 4.213 12 C -0.070 4.070 13 C -0.169 4.169 14 C -0.008 4.008 15 C -0.087 4.087 16 C -0.161 4.161 17 C -0.079 4.079 18 C -0.206 4.206 19 C -0.099 4.099 20 N -0.034 5.034 21 O -0.093 6.093 22 C 0.033 3.967 23 C -0.061 4.061 24 C -0.253 4.253 25 H 0.081 0.919 26 H 0.139 0.861 27 H 0.133 0.867 28 H 0.158 0.842 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.224 0.776 32 H 0.125 0.875 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.541 -16.077 1.663 19.296 hybrid contribution 0.408 0.280 0.525 0.721 sum 10.950 -15.796 2.187 19.344 Atomic orbital electron populations 1.70039 1.06015 1.27897 1.45329 1.25321 0.95865 0.98946 0.96301 0.85691 0.78967 0.79851 0.78846 1.19753 1.20158 1.19076 1.21392 0.91964 0.80716 1.52778 0.88825 1.83956 1.34561 1.11595 1.77196 1.19487 0.90239 0.88023 0.91612 1.20122 0.99646 0.90115 1.11429 1.20616 0.91999 0.96919 0.97515 1.18023 0.92608 0.90841 1.15461 1.17824 0.93685 0.96156 0.93122 1.21298 0.98958 0.92587 0.95844 1.20953 0.96887 0.98018 1.00290 1.20591 0.97002 0.97808 0.92543 1.20826 1.00102 0.98489 1.01186 1.26032 0.96770 0.95953 0.91166 1.79843 1.01033 1.05957 1.16527 1.89215 1.42008 1.40489 1.37608 1.20361 0.95369 0.91366 0.89581 1.20736 0.98314 0.91341 0.95681 1.21083 0.93692 0.98918 1.11570 0.91860 0.86148 0.86737 0.84238 0.84979 0.85193 0.77622 0.87508 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.91 13.67 55.48 0.76 -24.15 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 20.40 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.39 -10.91 9.48 30.88 0.29 -10.62 16 8 H 0.09 2.42 5.19 -52.49 -0.27 2.14 16 9 O -0.17 -4.83 9.75 0.22 0.00 -4.83 16 10 C 0.16 3.89 6.65 -39.01 -0.26 3.63 16 11 C -0.19 -4.04 9.98 -39.45 -0.39 -4.44 16 12 C -0.05 -0.93 9.50 -39.27 -0.37 -1.30 16 13 C -0.17 -3.03 5.48 -104.86 -0.57 -3.60 16 14 C -0.01 -0.09 5.48 -104.82 -0.57 -0.67 16 15 C -0.07 -0.80 9.49 -39.19 -0.37 -1.18 16 16 C -0.14 -1.35 10.01 -39.67 -0.40 -1.75 16 17 C -0.06 -0.56 10.09 -39.19 -0.40 -0.95 16 18 C -0.20 -2.44 6.35 -105.18 -0.67 -3.11 16 19 C 0.10 1.08 12.32 -15.06 -0.19 0.89 16 20 N -0.29 -4.29 12.81 31.95 0.41 -3.88 16 21 O -0.08 -1.43 11.95 7.90 0.09 -1.34 16 22 C 0.09 1.36 6.96 -38.14 -0.27 1.09 16 23 C -0.04 -0.83 9.42 -39.27 -0.37 -1.20 16 24 C -0.23 -5.18 9.15 -39.45 -0.36 -5.54 16 25 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.12 2.39 8.06 -52.48 -0.42 1.96 16 27 H 0.11 1.67 8.05 -52.48 -0.42 1.24 16 28 H 0.14 1.45 8.03 -52.49 -0.42 1.02 16 29 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 30 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 31 H 0.21 1.08 8.06 -52.48 -0.42 0.66 16 32 H 0.11 1.94 8.04 -52.49 -0.42 1.52 16 33 H 0.13 2.87 5.62 -52.48 -0.30 2.58 16 LS Contribution 300.38 15.07 4.53 4.53 Total: -1.00 -32.32 300.38 -6.88 -39.21 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -2.66 Total: 2.81 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -4.99 Total: -27.72 kcal Atomic # 7 Polarization: -29.20 SS G_CDS: 1.17 Total: -28.03 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: 0.10 Total: -6.17 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.32 -6.88 -39.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243593355.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.690 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds