Wall clock time and date at job start Tue Mar 31 2020 05:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99663 * 2 1 4 4 H 1.48495 * 109.46922 * 269.99846 * 3 2 1 5 5 H 1.48493 * 109.47170 * 30.00419 * 3 2 1 6 6 H 1.48509 * 109.46732 * 150.00205 * 3 2 1 7 7 C 1.37879 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99778 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.53045 * 109.45936 * 179.97438 * 9 7 2 11 11 C 1.53189 * 109.31267 * 181.36924 * 10 9 7 12 12 N 1.46923 * 108.77751 * 305.36979 * 11 10 9 13 13 S 1.65606 * 120.62889 * 233.58517 * 12 11 10 14 14 O 1.42094 * 104.27817 * 333.92814 * 13 12 11 15 15 O 1.42106 * 104.27580 * 206.07045 * 13 12 11 16 16 C 1.81396 * 104.45103 * 90.00030 * 13 12 11 17 17 C 1.52997 * 109.47360 * 179.97438 * 16 13 12 18 18 Cl 1.80300 * 109.47276 * 180.02562 * 17 16 13 19 19 C 1.46931 * 118.74107 * 53.86074 * 12 11 10 20 20 C 1.53037 * 109.45066 * 300.05711 * 9 7 2 21 21 H 0.96996 * 120.00391 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.46031 * 60.02830 * 9 7 2 23 23 H 1.09005 * 109.49426 * 61.42475 * 10 9 7 24 24 H 1.08992 * 109.49752 * 301.32744 * 10 9 7 25 25 H 1.08999 * 109.58666 * 185.58022 * 11 10 9 26 26 H 1.08997 * 109.70153 * 65.22728 * 11 10 9 27 27 H 1.09002 * 109.47134 * 59.99751 * 16 13 12 28 28 H 1.08998 * 109.46953 * 300.00489 * 16 13 12 29 29 H 1.09002 * 109.47153 * 59.99820 * 17 16 13 30 30 H 1.09001 * 109.46832 * 300.00011 * 17 16 13 31 31 H 1.08995 * 109.58474 * 65.92316 * 19 12 11 32 32 H 1.08997 * 109.58648 * 186.35716 * 19 12 11 33 33 H 1.09000 * 109.49856 * 298.57770 * 20 9 7 34 34 H 1.09010 * 109.49490 * 58.67469 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2459 -3.6622 -0.0018 11 6 1.4768 -4.9866 -0.0364 12 7 0.5234 -5.0091 1.0813 13 16 0.5111 -6.2705 2.1544 14 8 1.0352 -7.3648 1.4150 15 8 -0.8195 -6.2933 2.6529 16 6 1.6701 -5.7685 3.4564 17 6 1.7468 -6.8645 4.5212 18 17 2.8983 -6.3652 5.8157 19 6 -0.4229 -3.8944 1.2253 20 6 0.3708 -2.5793 1.2488 21 1 -0.4850 0.8400 0.0004 22 1 0.6245 -2.5567 -0.8906 23 1 2.8565 -3.6195 0.9001 24 1 2.8876 -3.5910 -0.8799 25 1 2.1754 -5.8174 0.0624 26 1 0.9367 -5.0734 -0.9791 27 1 1.3236 -4.8417 3.9137 28 1 2.6580 -5.6125 3.0230 29 1 2.0931 -7.7915 4.0641 30 1 0.7588 -7.0199 4.9544 31 1 -1.1149 -3.8915 0.3832 32 1 -0.9780 -4.0045 2.1569 33 1 0.9989 -2.5467 2.1390 34 1 -0.3218 -1.7376 1.2604 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253481113.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:15 Heat of formation + Delta-G solvation = -93.907083 kcal Electronic energy + Delta-G solvation = -18804.037608 eV Core-core repulsion = 15696.378025 eV Total energy + Delta-G solvation = -3107.659583 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.064 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -37.81349 -37.12852 -36.44316 -35.92547 -33.49533 -32.74109 -30.93786 -30.13783 -25.84403 -24.16645 -22.53081 -22.34853 -19.50749 -18.54457 -17.61364 -16.60931 -16.34096 -16.19083 -15.15090 -14.61779 -14.32857 -14.08532 -13.52831 -13.46855 -13.18130 -12.90930 -12.86128 -12.42070 -12.24862 -12.07091 -11.98748 -11.44812 -11.21953 -11.00893 -10.96972 -10.71351 -10.70057 -10.54226 -10.43849 -10.12299 -9.66430 -9.27039 -9.05178 -8.47068 -8.31033 -6.06207 -4.12865 0.19393 1.95957 2.72786 3.25545 3.33165 3.35613 3.75708 4.09924 4.15701 4.37626 4.43900 4.76684 5.05721 5.08935 5.23628 5.49729 5.66491 5.82984 6.02244 6.08517 6.25912 6.34084 6.36663 6.64661 6.81978 6.99462 7.08982 7.34219 7.65229 7.88458 8.01953 8.36185 8.90970 9.52664 10.99158 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.020528 B = 0.005181 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.641446 B = 5403.450084 C = 6109.302543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.050 3.950 10 C -0.126 4.126 11 C 0.121 3.879 12 N -0.986 5.986 13 S 2.611 3.389 14 O -0.957 6.957 15 O -0.954 6.954 16 C -0.654 4.654 17 C -0.021 4.021 18 Cl -0.165 7.165 19 C 0.117 3.883 20 C -0.126 4.126 21 H 0.261 0.739 22 H 0.029 0.971 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.082 -11.650 6.592 13.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.165 4.165 11 C -0.003 4.003 12 N -0.826 5.826 13 S 2.701 3.299 14 O -0.947 6.947 15 O -0.944 6.944 16 C -0.780 4.780 17 C -0.085 4.085 18 Cl -0.139 7.139 19 C -0.007 4.007 20 C -0.165 4.165 21 H 0.071 0.929 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.164 0.836 28 H 0.162 0.838 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.517 -12.271 6.630 14.030 hybrid contribution 1.066 1.617 0.378 1.973 sum 2.583 -10.653 7.009 13.011 Atomic orbital electron populations 1.69831 1.05841 1.26521 1.50727 1.24959 0.94847 0.99043 0.95086 0.86635 0.79865 0.83618 0.78101 1.20724 1.21270 1.20038 1.21204 0.92894 0.90619 1.50488 0.92741 1.18594 0.92605 0.91485 0.94188 1.22043 0.98882 0.94621 1.00930 1.21554 0.90879 0.99177 0.88739 1.57563 1.46208 1.39380 1.39416 1.04999 0.75402 0.74209 0.75244 1.93580 1.81819 1.50908 1.68416 1.93593 1.32758 1.86329 1.81717 1.31218 1.20840 1.09560 1.16425 1.23841 0.97055 0.97711 0.89933 1.98736 1.65763 1.93045 1.56362 1.21843 0.90699 0.86679 1.01465 1.22130 1.00018 0.94947 0.99395 0.92926 0.95322 0.93008 0.92045 0.90666 0.91282 0.83604 0.83775 0.87578 0.87538 0.91349 0.90850 0.94326 0.87778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.96 11.31 55.43 0.63 -23.34 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 3 Si 0.89 20.42 29.54 -169.99 -5.02 15.39 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.51 -13.14 8.56 -34.44 -0.29 -13.43 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 9 C 0.05 1.12 2.06 -91.73 -0.19 0.93 16 10 C -0.13 -2.29 5.30 -26.61 -0.14 -2.43 16 11 C 0.12 1.90 6.31 -3.71 -0.02 1.88 16 12 N -0.99 -15.45 3.22 -113.28 -0.36 -15.82 16 13 S 2.61 35.92 5.41 -107.50 -0.58 35.33 16 14 O -0.96 -14.93 16.72 -57.54 -0.96 -15.89 16 15 O -0.95 -15.38 16.72 -57.54 -0.96 -16.34 16 16 C -0.65 -7.06 6.30 37.16 0.23 -6.83 16 17 C -0.02 -0.20 6.66 37.16 0.25 0.05 16 18 Cl -0.17 -1.82 29.15 -51.86 -1.51 -3.33 16 19 C 0.12 2.04 6.34 -3.48 -0.02 2.02 16 20 C -0.13 -2.62 5.17 -26.39 -0.14 -2.75 16 21 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 22 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.08 1.02 7.10 -51.93 -0.37 0.66 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.15 1.53 8.14 -51.92 -0.42 1.10 16 28 H 0.14 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.07 1.16 7.09 -51.93 -0.37 0.79 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 2.48 6.03 -51.92 -0.31 2.16 16 LS Contribution 303.08 15.07 4.57 4.57 Total: -1.00 -29.91 303.08 -9.45 -39.35 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -4.82 Total: -0.89 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -0.42 Total: -19.04 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.26 Total: -39.15 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -1.92 Total: -32.23 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 35.92 SS G_CDS: -0.58 Total: 35.33 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -1.51 Total: -3.33 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.91 -9.45 -39.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253481113.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.555 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds