Wall clock time and date at job start Tue Mar 31 2020 05:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99731 * 2 1 4 4 H 1.48500 * 109.46906 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46813 * 299.99663 * 3 2 1 6 6 H 1.48490 * 109.47362 * 59.99717 * 3 2 1 7 7 C 1.37877 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99671 * 173.38845 * 7 2 1 9 9 C 1.50697 * 119.99774 * 353.39223 * 7 2 1 10 10 N 1.46502 * 110.02130 * 63.00290 * 9 7 2 11 11 S 1.65602 * 119.99912 * 54.33931 * 10 9 7 12 12 O 1.42099 * 104.27401 * 181.45511 * 11 10 9 13 13 O 1.42096 * 104.27943 * 309.31775 * 11 10 9 14 14 C 1.81396 * 104.44621 * 65.38646 * 11 10 9 15 15 C 1.53001 * 109.47080 * 179.97438 * 14 11 10 16 16 Cl 1.80306 * 109.47304 * 179.97438 * 15 14 11 17 17 C 1.54268 * 110.06902 * 184.41815 * 9 7 2 18 18 C 1.54890 * 104.19570 * 95.70060 * 17 9 7 19 19 C 1.54881 * 102.75162 * 37.93557 * 18 17 9 20 20 C 1.53867 * 110.03343 * 301.60760 * 9 7 2 21 21 H 0.97005 * 119.99741 * 5.00951 * 1 2 3 22 22 H 0.96999 * 119.99748 * 234.35390 * 10 9 7 23 23 H 1.09000 * 109.47520 * 299.99805 * 14 11 10 24 24 H 1.09003 * 109.47126 * 59.99874 * 14 11 10 25 25 H 1.09000 * 109.47642 * 300.00223 * 15 14 11 26 26 H 1.09003 * 109.46844 * 60.00191 * 15 14 11 27 27 H 1.09005 * 110.48492 * 214.36998 * 17 9 7 28 28 H 1.08999 * 110.48757 * 337.01685 * 17 9 7 29 29 H 1.09008 * 110.74845 * 279.62280 * 18 17 9 30 30 H 1.08993 * 110.91643 * 156.33258 * 18 17 9 31 31 H 1.08999 * 110.49327 * 203.38096 * 19 18 17 32 32 H 1.09004 * 110.48261 * 80.73790 * 19 18 17 33 33 H 1.08999 * 110.03409 * 359.95305 * 20 9 7 34 34 H 1.09000 * 110.03775 * 121.38549 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0792 -1.1971 -0.1072 9 6 1.2586 -2.4947 0.1513 10 7 0.3487 -2.6852 -0.9810 11 16 0.9293 -2.6161 -2.5304 12 8 -0.2200 -2.8070 -3.3440 13 8 1.6650 -1.4012 -2.5751 14 6 2.0446 -4.0408 -2.6598 15 6 2.6514 -4.0876 -4.0636 16 17 3.7606 -5.5033 -4.1920 17 6 2.2547 -3.6699 0.2323 18 6 2.4352 -3.9107 1.7517 19 6 1.0087 -3.6753 2.3071 20 6 0.4664 -2.4981 1.4704 21 1 -0.4850 0.8369 -0.0734 22 1 -0.5937 -2.8517 -0.8232 23 1 2.8415 -3.9466 -1.9221 24 1 1.4853 -4.9580 -2.4753 25 1 1.8543 -4.1820 -4.8011 26 1 3.2106 -3.1704 -4.2484 27 1 1.8390 -4.5560 -0.2475 28 1 3.2050 -3.3969 -0.2263 29 1 3.1380 -3.1933 2.1756 30 1 2.7625 -4.9317 1.9477 31 1 1.0497 -3.4062 3.3625 32 1 0.3918 -4.5623 2.1622 33 1 0.6222 -1.5594 2.0019 34 1 -0.5950 -2.6415 1.2682 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253593507.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:20 Heat of formation + Delta-G solvation = -88.793813 kcal Electronic energy + Delta-G solvation = -19600.224930 eV Core-core repulsion = 16492.787075 eV Total energy + Delta-G solvation = -3107.437855 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.064 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -37.90269 -36.11172 -36.01371 -34.81283 -32.86838 -32.30604 -31.55665 -27.95140 -26.90065 -24.10606 -23.56997 -19.91725 -19.25706 -18.36941 -17.07544 -16.09647 -15.77000 -15.61289 -14.85364 -14.46528 -14.30216 -13.96977 -13.61257 -13.10085 -12.88227 -12.50422 -12.05064 -11.77013 -11.44144 -11.18785 -11.09046 -10.95666 -10.76099 -10.72085 -10.51137 -10.43478 -10.31450 -10.23545 -10.09130 -9.92212 -9.66782 -9.62680 -9.31278 -8.40728 -7.95328 -6.03948 -4.09339 1.08720 2.32467 3.34089 3.45011 3.47190 3.83563 4.47118 4.49138 4.66394 4.90124 5.16681 5.22973 5.28917 5.54138 5.56397 5.62941 5.83212 5.94439 6.17665 6.32306 6.44013 6.47654 6.59482 6.66560 6.70478 6.98513 7.02261 7.33963 7.62050 7.92126 8.22192 8.42418 8.89243 9.58365 11.00565 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.016961 B = 0.008024 C = 0.006814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.464305 B = 3488.573110 C = 4107.998706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.094 3.906 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.288 1.288 7 C -0.509 4.509 8 H 0.065 0.935 9 C 0.295 3.705 10 N -1.070 6.070 11 S 2.606 3.394 12 O -0.997 6.997 13 O -0.917 6.917 14 C -0.674 4.674 15 C -0.013 4.013 16 Cl -0.182 7.182 17 C -0.150 4.150 18 C -0.112 4.112 19 C -0.129 4.129 20 C -0.086 4.086 21 H 0.261 0.739 22 H 0.397 0.603 23 H 0.148 0.852 24 H 0.129 0.871 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.047 -8.560 -1.310 9.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.112 4.112 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.215 1.215 7 C -0.550 4.550 8 H 0.083 0.917 9 C 0.210 3.790 10 N -0.829 5.829 11 S 2.694 3.306 12 O -0.987 6.987 13 O -0.906 6.906 14 C -0.796 4.796 15 C -0.077 4.077 16 Cl -0.156 7.156 17 C -0.189 4.189 18 C -0.150 4.150 19 C -0.167 4.167 20 C -0.126 4.126 21 H 0.070 0.930 22 H 0.230 0.770 23 H 0.166 0.834 24 H 0.147 0.853 25 H 0.119 0.881 26 H 0.124 0.876 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.976 -7.938 -2.002 8.710 hybrid contribution 0.332 0.132 0.258 0.441 sum 3.308 -7.806 -1.744 8.655 Atomic orbital electron populations 1.69967 1.06066 1.26946 1.47258 1.24813 0.94583 0.99089 0.92745 0.86544 0.80502 0.83797 0.77119 1.19643 1.20943 1.21463 1.21321 0.93559 0.89503 1.50636 0.91659 1.18509 0.85375 0.91591 0.83563 1.56018 1.17534 1.87534 1.21808 1.05686 0.74910 0.75903 0.74095 1.93484 1.48275 1.87522 1.69415 1.93651 1.74201 1.37067 1.85701 1.31710 1.19141 1.25536 1.03230 1.23861 0.95691 0.91359 0.96801 1.98705 1.68668 1.49537 1.98690 1.23276 1.00266 0.98734 0.96647 1.22296 0.97334 0.99524 0.95829 1.22444 0.96295 0.98958 0.98970 1.22138 0.97933 0.96969 0.95564 0.92959 0.77047 0.83418 0.85274 0.88147 0.87610 0.92848 0.91819 0.91374 0.93283 0.92966 0.93156 0.90701 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.86 11.90 55.43 0.66 -22.20 16 2 C 0.09 2.45 4.35 -17.82 -0.08 2.37 16 3 Si 0.89 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -12.44 5.70 -34.44 -0.20 -12.64 16 8 H 0.07 1.62 7.51 -52.49 -0.39 1.23 16 9 C 0.29 6.12 0.61 -131.86 -0.08 6.04 16 10 N -1.07 -21.79 4.82 0.51 0.00 -21.79 16 11 S 2.61 51.56 5.42 -107.50 -0.58 50.98 16 12 O -1.00 -21.73 18.08 -57.54 -1.04 -22.77 16 13 O -0.92 -21.71 15.17 -57.54 -0.87 -22.59 16 14 C -0.67 -10.07 4.67 37.16 0.17 -9.90 16 15 C -0.01 -0.18 6.66 37.16 0.25 0.07 16 16 Cl -0.18 -2.43 29.15 -51.86 -1.51 -3.94 16 17 C -0.15 -2.60 4.03 -25.07 -0.10 -2.70 16 18 C -0.11 -1.78 6.91 -24.74 -0.17 -1.95 16 19 C -0.13 -2.10 6.83 -25.08 -0.17 -2.27 16 20 C -0.09 -1.72 5.36 -25.62 -0.14 -1.85 16 21 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 22 H 0.40 7.80 8.17 -34.47 -0.28 7.52 16 23 H 0.15 2.19 5.19 -51.92 -0.27 1.92 16 24 H 0.13 1.69 8.07 -51.92 -0.42 1.27 16 25 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.11 1.34 8.14 -51.93 -0.42 0.91 16 27 H 0.05 0.82 6.78 -51.93 -0.35 0.47 16 28 H 0.06 1.10 6.48 -51.93 -0.34 0.76 16 29 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.69 7.11 -51.93 -0.37 1.32 16 34 H 0.05 0.98 7.45 -51.93 -0.39 0.59 16 LS Contribution 294.44 15.07 4.44 4.44 Total: -1.00 -29.60 294.44 -8.92 -38.52 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -4.48 Total: 5.92 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: -0.51 Total: -22.84 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.66 Total: -43.99 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -1.91 Total: -45.36 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 51.56 SS G_CDS: -0.58 Total: 50.98 kcal Atomic # 17 Polarization: -2.43 SS G_CDS: -1.51 Total: -3.94 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.60 -8.92 -38.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253593507.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.269 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds