Wall clock time and date at job start Tue Mar 31 2020 05:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48503 * 109.47000 * 239.99790 * 3 2 1 5 5 H 1.48506 * 109.47330 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47185 * 119.99599 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00081 * 274.99878 * 10 9 7 12 12 C 1.54265 * 110.02979 * 57.91006 * 11 10 9 13 13 C 1.54968 * 104.16064 * 217.13319 * 12 11 10 14 14 C 1.54890 * 102.77512 * 37.88792 * 13 12 11 15 15 C 1.53870 * 110.03352 * 300.69086 * 11 10 9 16 16 S 1.65599 * 119.99913 * 95.00113 * 10 9 7 17 17 O 1.42093 * 104.27994 * 206.07199 * 16 10 9 18 18 O 1.42107 * 104.27677 * 333.92946 * 16 10 9 19 19 C 1.81408 * 104.44927 * 89.99600 * 16 10 9 20 20 Cl 1.80298 * 109.46978 * 171.62301 * 19 16 10 21 21 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 23 23 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 24 24 H 1.09001 * 110.01704 * 179.29959 * 11 10 9 25 25 H 1.08994 * 110.49157 * 335.78453 * 12 11 10 26 26 H 1.09003 * 110.48561 * 98.42565 * 12 11 10 27 27 H 1.08998 * 110.72049 * 279.58277 * 13 12 11 28 28 H 1.08998 * 110.92581 * 156.29501 * 13 12 11 29 29 H 1.08997 * 110.49215 * 203.40518 * 14 13 12 30 30 H 1.09007 * 110.60109 * 80.81904 * 14 13 12 31 31 H 1.08999 * 110.03154 * 238.56971 * 15 11 10 32 32 H 1.09000 * 110.03535 * 0.02562 * 15 11 10 33 33 H 1.09000 * 109.47001 * 291.62471 * 19 16 10 34 34 H 1.08997 * 109.46792 * 51.62951 * 19 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7466 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 2.7634 -4.0974 -1.2633 12 6 3.4873 -2.9487 -1.9957 13 6 3.1758 -3.1981 -3.4932 14 6 1.7081 -3.6920 -3.4601 15 6 1.6329 -4.5702 -2.1939 16 16 2.6464 -4.3231 1.4292 17 8 3.9356 -4.8607 1.1683 18 8 2.4612 -3.3024 2.4005 19 6 1.4375 -5.6546 1.6667 20 17 1.9380 -6.6787 3.0635 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5570 -0.8897 23 1 0.6243 -2.5567 0.8903 24 1 3.4580 -4.9158 -1.0740 25 1 3.0903 -1.9843 -1.6791 26 1 4.5611 -2.9981 -1.8153 27 1 3.8327 -3.9663 -3.9010 28 1 3.2599 -2.2753 -4.0672 29 1 1.4843 -4.2831 -4.3481 30 1 1.0214 -2.8491 -3.3810 31 1 1.7793 -5.6178 -2.4569 32 1 0.6675 -4.4385 -1.7054 33 1 0.4563 -5.2233 1.8654 34 1 1.3897 -6.2667 0.7661 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260931037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:21 Heat of formation + Delta-G solvation = -83.107688 kcal Electronic energy + Delta-G solvation = -19307.954452 eV Core-core repulsion = 16200.763166 eV Total energy + Delta-G solvation = -3107.191286 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.064 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.29893 -36.68635 -36.39159 -35.45981 -34.12130 -32.33744 -28.69802 -28.22502 -27.92326 -26.06842 -22.67394 -20.24227 -19.78912 -18.21518 -17.41910 -16.69380 -16.08033 -15.80165 -15.07940 -14.88929 -14.43411 -14.08678 -13.90259 -13.09183 -12.85811 -12.47067 -12.30760 -11.99049 -11.77286 -11.64660 -11.57729 -11.18587 -10.95130 -10.84060 -10.81731 -10.74046 -10.59311 -10.49673 -10.38892 -10.20442 -10.14021 -9.88533 -9.43184 -8.47228 -8.15309 -6.11608 -4.13242 0.45688 1.65413 3.26423 3.31600 3.35448 3.40890 4.22739 4.27523 4.40746 4.97732 4.99043 5.06230 5.10420 5.21968 5.30299 5.65192 5.84132 5.97552 6.00947 6.10164 6.11571 6.24199 6.34324 6.50841 6.71714 6.78487 7.11147 7.22217 7.31763 7.55699 7.85615 8.14343 8.86496 9.49804 10.96870 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.016229 B = 0.007825 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.922912 B = 3577.618999 C = 4603.388327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.066 0.934 9 C 0.252 3.748 10 N -0.971 5.971 11 C 0.149 3.851 12 C -0.150 4.150 13 C -0.121 4.121 14 C -0.118 4.118 15 C -0.139 4.139 16 S 2.602 3.398 17 O -0.951 6.951 18 O -0.915 6.915 19 C -0.577 4.577 20 Cl -0.123 7.123 21 H 0.264 0.736 22 H 0.043 0.957 23 H 0.037 0.963 24 H 0.087 0.913 25 H 0.125 0.875 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.151 0.849 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.430 -10.781 -3.444 11.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.084 0.916 9 C 0.131 3.869 10 N -0.811 5.811 11 C 0.042 3.958 12 C -0.188 4.188 13 C -0.159 4.159 14 C -0.156 4.156 15 C -0.178 4.178 16 S 2.687 3.313 17 O -0.941 6.941 18 O -0.905 6.905 19 C -0.724 4.724 20 Cl -0.096 7.096 21 H 0.074 0.926 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.105 0.895 25 H 0.142 0.858 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.170 0.830 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.952 -10.559 -2.733 11.080 hybrid contribution -0.363 0.370 -0.143 0.538 sum 1.589 -10.189 -2.875 10.705 Atomic orbital electron populations 1.69891 1.05972 1.27275 1.50143 1.24913 0.94865 0.99178 0.94910 0.86623 0.79651 0.82736 0.78890 1.20097 1.21247 1.19962 1.21386 0.93647 0.90235 1.50825 0.91589 1.19149 0.87118 0.82229 0.98450 1.57741 1.59636 1.44116 1.19654 1.21441 0.93940 0.96750 0.83653 1.23137 0.99551 1.02775 0.93384 1.22424 0.96012 1.00254 0.97185 1.22267 0.97497 0.99423 0.96404 1.22590 0.99902 0.98647 0.96669 1.05652 0.75604 0.74990 0.75005 1.93550 1.34485 1.81416 1.84657 1.93667 1.85706 1.51041 1.60098 1.34393 1.23576 1.16067 0.98407 1.98720 1.91982 1.72042 1.46885 0.92604 0.93901 0.94508 0.89470 0.85758 0.92368 0.92561 0.91832 0.92637 0.90909 0.92177 0.90710 0.83044 0.83548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.70 13.29 55.43 0.74 -23.96 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -13.49 7.24 -34.44 -0.25 -13.74 16 8 H 0.07 1.72 6.94 -52.48 -0.36 1.36 16 9 C 0.25 5.71 4.49 -5.19 -0.02 5.69 16 10 N -0.97 -18.33 2.64 -107.38 -0.28 -18.61 16 11 C 0.15 2.45 3.24 -66.82 -0.22 2.23 16 12 C -0.15 -2.59 6.29 -25.03 -0.16 -2.74 16 13 C -0.12 -1.72 6.91 -24.70 -0.17 -1.89 16 14 C -0.12 -1.65 6.83 -25.07 -0.17 -1.82 16 15 C -0.14 -1.94 6.03 -25.61 -0.15 -2.10 16 16 S 2.60 47.80 5.48 -107.50 -0.59 47.21 16 17 O -0.95 -18.61 16.58 -57.54 -0.95 -19.56 16 18 O -0.92 -20.64 16.99 -57.54 -0.98 -21.62 16 19 C -0.58 -7.85 7.63 101.05 0.77 -7.08 16 20 Cl -0.12 -1.75 29.16 -51.86 -1.51 -3.26 16 21 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 22 H 0.04 0.98 6.80 -51.93 -0.35 0.62 16 23 H 0.04 0.89 7.61 -51.93 -0.40 0.49 16 24 H 0.09 1.33 6.90 -51.93 -0.36 0.97 16 25 H 0.12 2.56 4.41 -51.93 -0.23 2.33 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.07 6.88 -51.93 -0.36 0.72 16 33 H 0.15 1.83 8.14 -51.92 -0.42 1.41 16 34 H 0.15 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 302.11 15.07 4.55 4.55 Total: -1.00 -30.14 302.11 -9.09 -39.23 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -4.57 Total: -0.11 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -0.47 Total: -19.83 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.45 Total: -42.57 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -1.93 Total: -41.18 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 47.80 SS G_CDS: -0.59 Total: 47.21 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -1.51 Total: -3.26 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.14 -9.09 -39.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260931037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.875 kcal (2) G-P(sol) polarization free energy of solvation -30.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds