Wall clock time and date at job start Tue Mar 31 2020 05:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48503 * 109.47000 * 239.99790 * 3 2 1 5 5 H 1.48506 * 109.47330 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47185 * 119.99599 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00081 * 274.99878 * 10 9 7 12 12 C 1.54265 * 110.02979 * 57.91006 * 11 10 9 13 13 C 1.54968 * 104.16064 * 217.13319 * 12 11 10 14 14 C 1.54890 * 102.77512 * 37.88792 * 13 12 11 15 15 C 1.53870 * 110.03352 * 300.69086 * 11 10 9 16 16 S 1.65599 * 119.99913 * 95.00113 * 10 9 7 17 17 O 1.42093 * 104.27994 * 206.07199 * 16 10 9 18 18 O 1.42107 * 104.27677 * 333.92946 * 16 10 9 19 19 C 1.81408 * 104.44927 * 89.99600 * 16 10 9 20 20 Cl 1.80298 * 109.46978 * 171.62301 * 19 16 10 21 21 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 23 23 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 24 24 H 1.09001 * 110.01704 * 179.29959 * 11 10 9 25 25 H 1.08994 * 110.49157 * 335.78453 * 12 11 10 26 26 H 1.09003 * 110.48561 * 98.42565 * 12 11 10 27 27 H 1.08998 * 110.72049 * 279.58277 * 13 12 11 28 28 H 1.08998 * 110.92581 * 156.29501 * 13 12 11 29 29 H 1.08997 * 110.49215 * 203.40518 * 14 13 12 30 30 H 1.09007 * 110.60109 * 80.81904 * 14 13 12 31 31 H 1.08999 * 110.03154 * 238.56971 * 15 11 10 32 32 H 1.09000 * 110.03535 * 0.02562 * 15 11 10 33 33 H 1.09000 * 109.47001 * 291.62471 * 19 16 10 34 34 H 1.08997 * 109.46792 * 51.62951 * 19 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7466 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 2.7634 -4.0974 -1.2633 12 6 3.4873 -2.9487 -1.9957 13 6 3.1758 -3.1981 -3.4932 14 6 1.7081 -3.6920 -3.4601 15 6 1.6329 -4.5702 -2.1939 16 16 2.6464 -4.3231 1.4292 17 8 3.9356 -4.8607 1.1683 18 8 2.4612 -3.3024 2.4005 19 6 1.4375 -5.6546 1.6667 20 17 1.9380 -6.6787 3.0635 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5570 -0.8897 23 1 0.6243 -2.5567 0.8903 24 1 3.4580 -4.9158 -1.0740 25 1 3.0903 -1.9843 -1.6791 26 1 4.5611 -2.9981 -1.8153 27 1 3.8327 -3.9663 -3.9010 28 1 3.2599 -2.2753 -4.0672 29 1 1.4843 -4.2831 -4.3481 30 1 1.0214 -2.8491 -3.3810 31 1 1.7793 -5.6178 -2.4569 32 1 0.6675 -4.4385 -1.7054 33 1 0.4563 -5.2233 1.8654 34 1 1.3897 -6.2667 0.7661 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260931037.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:21 Heat of formation + Delta-G solvation = -103.263861 kcal Electronic energy + Delta-G solvation = -19308.828490 eV Core-core repulsion = 16200.763166 eV Total energy + Delta-G solvation = -3108.065323 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.064 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.60783 -38.24700 -37.56356 -37.02460 -35.69984 -34.16994 -29.96366 -29.60791 -29.32974 -27.59236 -24.50326 -21.41704 -21.12569 -19.68730 -18.88267 -18.55920 -17.57495 -17.31437 -16.51320 -16.22590 -16.01597 -15.26577 -15.14108 -14.63325 -14.41269 -13.93408 -13.81936 -13.40560 -13.28466 -13.22782 -13.13594 -12.93348 -12.66979 -12.50016 -12.21406 -12.07422 -11.93722 -11.82409 -11.72243 -11.59758 -11.46936 -11.25001 -11.03718 -10.50343 -9.71953 -8.14815 -6.20209 -0.98020 0.45959 1.40773 1.43619 1.49795 1.82624 2.44196 2.82707 3.03498 3.17352 3.71614 3.74696 3.88806 4.05400 4.16248 4.33597 4.66493 4.76528 4.82008 4.84249 4.98897 5.09333 5.18856 5.27259 5.34936 5.42374 5.56902 5.60693 5.75994 5.85543 6.05211 6.19624 6.83847 7.44340 8.92453 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.016229 B = 0.007825 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.922912 B = 3577.618999 C = 4603.388327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.016 3.984 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.268 3.732 10 N -0.976 5.976 11 C 0.139 3.861 12 C -0.160 4.160 13 C -0.114 4.114 14 C -0.117 4.117 15 C -0.135 4.135 16 S 2.602 3.398 17 O -0.969 6.969 18 O -0.970 6.970 19 C -0.555 4.555 20 Cl -0.120 7.120 21 H 0.265 0.735 22 H 0.041 0.959 23 H 0.020 0.980 24 H 0.104 0.896 25 H 0.086 0.914 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.173 0.827 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.338 -12.814 -4.575 13.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.183 4.183 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.566 4.566 8 H 0.072 0.928 9 C 0.145 3.855 10 N -0.815 5.815 11 C 0.034 3.966 12 C -0.199 4.199 13 C -0.152 4.152 14 C -0.155 4.155 15 C -0.174 4.174 16 S 2.693 3.307 17 O -0.959 6.959 18 O -0.960 6.960 19 C -0.708 4.708 20 Cl -0.094 7.094 21 H 0.074 0.926 22 H 0.059 0.941 23 H 0.038 0.962 24 H 0.122 0.878 25 H 0.104 0.896 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.191 0.809 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 1.915 -12.553 -3.889 13.281 hybrid contribution -0.287 0.884 0.243 0.961 sum 1.628 -11.669 -3.646 12.333 Atomic orbital electron populations 1.69965 1.06855 1.27774 1.51613 1.25561 0.95623 1.01914 0.95217 0.85863 0.78725 0.79934 0.78735 1.19066 1.20578 1.20747 1.21703 0.93368 0.91996 1.49529 0.92757 1.18695 0.87096 0.82337 0.97348 1.57518 1.59166 1.44065 1.20759 1.21747 0.95213 0.96661 0.83021 1.23107 0.99404 1.01343 0.96070 1.22408 0.96852 1.01069 0.94839 1.22262 0.96468 0.98969 0.97822 1.22603 0.98439 1.00628 0.95708 1.05222 0.75988 0.75429 0.74022 1.93522 1.36258 1.81582 1.84574 1.93608 1.86646 1.54253 1.61536 1.34000 1.21728 1.14621 1.00418 1.98737 1.92015 1.71599 1.47003 0.92645 0.94088 0.96176 0.87788 0.89584 0.92567 0.89867 0.92166 0.89648 0.93626 0.88428 0.91218 0.80942 0.79356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.91 13.29 21.45 0.28 -51.63 16 2 C 0.02 0.89 5.46 84.65 0.46 1.35 16 3 Si 0.94 43.81 29.54 68.60 2.03 45.83 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 7 C -0.53 -28.01 7.24 25.60 0.19 -27.82 16 8 H 0.05 2.94 6.94 -2.91 -0.02 2.92 16 9 C 0.27 12.36 4.49 85.63 0.38 12.74 16 10 N -0.98 -36.35 2.64 -493.65 -1.31 -37.65 16 11 C 0.14 4.35 3.24 45.71 0.15 4.50 16 12 C -0.16 -5.48 6.29 31.70 0.20 -5.28 16 13 C -0.11 -3.03 6.91 31.91 0.22 -2.81 16 14 C -0.12 -3.00 6.83 31.67 0.22 -2.79 16 15 C -0.13 -3.36 6.03 31.32 0.19 -3.17 16 16 S 2.60 93.65 5.48 -56.49 -0.31 93.34 16 17 O -0.97 -37.01 16.58 -127.65 -2.12 -39.13 16 18 O -0.97 -44.62 16.99 -127.65 -2.17 -46.79 16 19 C -0.55 -13.39 7.63 113.37 0.87 -12.52 16 20 Cl -0.12 -3.12 29.16 -2.72 -0.08 -3.20 16 21 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 22 H 0.04 1.90 6.80 -2.38 -0.02 1.88 16 23 H 0.02 1.00 7.61 -2.39 -0.02 0.98 16 24 H 0.10 2.89 6.90 -2.39 -0.02 2.88 16 25 H 0.09 3.65 4.41 -2.39 -0.01 3.64 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 1.83 6.88 -2.39 -0.02 1.81 16 33 H 0.17 3.63 8.14 -2.39 -0.02 3.61 16 34 H 0.19 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -66.82 302.11 0.30 -66.52 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.10 Total: 8.52 kcal Atomic # 6 Polarization: -38.68 SS G_CDS: 2.87 Total: -35.81 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -1.02 Total: -89.28 kcal Atomic # 8 Polarization: -81.64 SS G_CDS: -4.28 Total: -85.92 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 93.65 SS G_CDS: -0.31 Total: 93.34 kcal Atomic # 17 Polarization: -3.12 SS G_CDS: -0.08 Total: -3.20 kcal Total: -66.82 0.30 -66.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260931037.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.743 kcal (2) G-P(sol) polarization free energy of solvation -66.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds