Wall clock time and date at job start Tue Mar 31 2020 05:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52993 * 109.46949 * 220.15941 * 3 2 1 5 5 N 1.46506 * 109.47340 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00242 * 274.93590 * 5 4 3 7 7 C 1.50695 * 109.46923 * 263.11077 * 6 5 4 8 8 H 1.08008 * 120.00261 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00210 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99552 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00030 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47143 * 90.00175 * 11 9 7 13 13 H 1.48502 * 109.46794 * 209.99413 * 11 9 7 14 14 H 1.48493 * 109.47456 * 329.99718 * 11 9 7 15 15 C 1.34783 * 119.99576 * 94.92861 * 5 4 3 16 16 O 1.21641 * 119.99975 * 3.73516 * 15 5 4 17 17 C 1.47180 * 119.99837 * 183.73232 * 15 5 4 18 18 C 1.35086 * 122.48695 * 173.63027 * 17 15 5 19 19 S 1.76188 * 108.21891 * 180.02562 * 18 17 15 20 20 C 1.76049 * 90.15887 * 359.97438 * 19 18 17 21 21 O 1.35499 * 125.18177 * 179.97438 * 20 19 18 22 22 N 1.29252 * 109.64346 * 0.02562 * 20 19 18 23 23 H 1.09000 * 109.46904 * 100.16508 * 3 2 1 24 24 H 1.08992 * 109.47299 * 340.16430 * 3 2 1 25 25 H 1.09004 * 109.47313 * 60.00428 * 4 3 2 26 26 H 1.08997 * 109.47983 * 300.00472 * 4 3 2 27 27 H 1.08997 * 109.46860 * 23.10977 * 6 5 4 28 28 H 1.09000 * 109.46720 * 143.11133 * 6 5 4 29 29 H 0.96999 * 119.99608 * 180.02562 * 10 9 7 30 30 H 1.07998 * 125.89406 * 0.02562 * 18 17 15 31 31 H 0.96705 * 113.99572 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.1033 0.9303 5 7 4.5825 1.1036 0.9308 6 6 5.3149 0.2053 1.8268 7 6 5.7130 0.9536 3.0728 8 1 5.4474 1.9944 3.1858 9 6 6.4173 0.3099 4.0682 10 7 6.7411 -0.9573 3.9304 11 14 6.9114 1.2377 5.6123 12 1 5.8387 1.1096 6.6313 13 1 8.1740 0.6691 6.1487 14 1 7.1142 2.6718 5.2846 15 6 5.2564 1.9303 0.1068 16 8 4.6502 2.7237 -0.5879 17 6 6.7259 1.8731 0.0476 18 6 7.4444 2.5861 -0.8470 19 16 9.1515 2.2367 -0.5864 20 6 8.7320 1.1430 0.7279 21 8 9.6197 0.4399 1.4719 22 7 7.4482 1.1120 0.8744 23 1 2.9712 0.1822 -1.0115 24 1 2.9718 -0.9658 0.3487 25 1 2.7542 0.9218 1.9419 26 1 2.7537 2.0698 0.5816 27 1 4.6781 -0.6371 2.0967 28 1 6.2086 -0.1617 1.3222 29 1 7.2363 -1.4102 4.6308 30 1 7.0418 3.2551 -1.5932 31 1 10.5430 0.5844 1.2231 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320618909.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:49 Heat of formation + Delta-G solvation = 25.051221 kcal Electronic energy + Delta-G solvation = -19592.930331 eV Core-core repulsion = 16389.321674 eV Total energy + Delta-G solvation = -3203.608658 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.07359 -38.52831 -37.05040 -36.55238 -35.24463 -32.67759 -31.11864 -29.59192 -27.05887 -25.68472 -23.45214 -23.00483 -20.99604 -19.75701 -18.12920 -17.50231 -17.03867 -16.42099 -15.78250 -15.44182 -15.12853 -14.97313 -14.60987 -14.35178 -14.19748 -13.49913 -13.00570 -12.54704 -12.42386 -12.29314 -12.09412 -11.99615 -11.79543 -11.63026 -11.30592 -10.91293 -10.77113 -10.63433 -10.11430 -9.73562 -9.52496 -9.18453 -8.72680 -8.31018 -8.22687 -7.76071 -5.98305 -3.97825 0.89373 1.19397 1.67057 2.57257 2.88309 2.95384 3.28200 3.31056 3.37760 3.41342 3.74299 3.90001 4.39110 4.48198 5.11459 5.29066 5.34226 5.39196 5.44925 5.60938 5.67786 6.00182 6.18913 6.26124 6.67918 6.95861 7.46377 7.67055 7.71674 7.91360 8.08424 8.21847 8.28737 8.74877 9.02196 9.63296 11.10280 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.012206 B = 0.007896 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.457389 B = 3545.197962 C = 5267.917141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.222 3.778 3 C -0.045 4.045 4 C 0.122 3.878 5 N -0.576 5.576 6 C 0.225 3.775 7 C -0.509 4.509 8 H 0.051 0.949 9 C 0.074 3.926 10 N -0.884 5.884 11 Si 0.885 3.115 12 H -0.283 1.283 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.590 3.410 16 O -0.563 6.563 17 C 0.064 3.936 18 C -0.190 4.190 19 S -0.021 6.021 20 C 0.290 3.710 21 O -0.407 6.407 22 N -0.394 5.394 23 H 0.108 0.892 24 H 0.114 0.886 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.030 0.970 28 H 0.085 0.915 29 H 0.259 0.741 30 H 0.187 0.813 31 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.479 2.315 -8.648 11.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.096 4.096 3 C -0.086 4.086 4 C -0.004 4.004 5 N -0.304 5.304 6 C 0.106 3.894 7 C -0.548 4.548 8 H 0.069 0.931 9 C -0.129 4.129 10 N -0.523 5.523 11 Si 0.713 3.287 12 H -0.209 1.209 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.376 3.624 16 O -0.444 6.444 17 C -0.067 4.067 18 C -0.331 4.331 19 S 0.224 5.776 20 C -0.031 4.031 21 O -0.204 6.204 22 N -0.121 5.121 23 H 0.126 0.874 24 H 0.132 0.868 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.069 0.931 30 H 0.204 0.796 31 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 4.864 2.252 -8.571 10.109 hybrid contribution 0.730 0.633 0.973 1.371 sum 5.594 2.885 -7.598 9.867 Atomic orbital electron populations 1.81180 1.13062 1.09230 1.09288 1.29088 0.95093 0.92723 0.92705 1.19770 0.81332 1.03611 1.03931 1.21208 0.81344 0.98067 0.99745 1.48192 1.05210 1.39143 1.37869 1.20154 0.92788 0.87950 0.88481 1.21179 1.35242 0.96988 1.01390 0.93089 1.24706 0.95590 0.94730 0.97842 1.69897 1.39351 1.09473 1.33578 0.86723 0.77995 0.80098 0.83853 1.20925 1.21298 1.20296 1.17094 0.84531 0.80811 0.80004 1.90740 1.68646 1.39377 1.45680 1.20135 0.95789 0.96982 0.93830 1.26572 0.92322 1.07612 1.06600 1.85103 1.09420 1.46521 1.36512 1.26044 0.90296 0.94282 0.92435 1.84924 1.18755 1.62541 1.54168 1.67128 1.00479 1.21541 1.22970 0.87368 0.86758 0.89207 0.89544 0.95251 0.89828 0.93084 0.79634 0.74076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.45 18.54 42.16 0.78 -6.67 16 2 C 0.22 3.15 15.43 -20.76 -0.32 2.83 16 3 C -0.05 -0.58 6.02 -29.52 -0.18 -0.75 16 4 C 0.12 1.94 5.41 -4.04 -0.02 1.92 16 5 N -0.58 -11.12 2.48 -176.42 -0.44 -11.56 16 6 C 0.23 5.08 4.79 -5.20 -0.02 5.05 16 7 C -0.51 -13.01 8.16 -34.44 -0.28 -13.29 16 8 H 0.05 1.36 7.81 -52.48 -0.41 0.95 16 9 C 0.07 1.94 5.46 -17.82 -0.10 1.85 16 10 N -0.88 -24.07 13.29 55.43 0.74 -23.34 16 11 Si 0.88 20.96 29.54 -169.99 -5.02 15.94 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 15 C 0.59 11.59 7.57 -12.63 -0.10 11.49 16 16 O -0.56 -11.41 16.17 5.24 0.08 -11.32 16 17 C 0.06 1.18 6.47 -84.60 -0.55 0.64 16 18 C -0.19 -2.88 10.84 29.61 0.32 -2.56 16 19 S -0.02 -0.27 23.38 -107.50 -2.51 -2.78 16 20 C 0.29 4.79 8.91 51.68 0.46 5.25 16 21 O -0.41 -6.08 13.64 -18.19 -0.25 -6.33 16 22 N -0.39 -7.89 5.71 -11.34 -0.06 -7.96 16 23 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 24 H 0.11 1.36 8.14 -51.93 -0.42 0.93 16 25 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 26 H 0.09 1.39 7.24 -51.93 -0.38 1.01 16 27 H 0.03 0.68 8.02 -51.93 -0.42 0.27 16 28 H 0.08 2.01 5.24 -51.93 -0.27 1.74 16 29 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.19 2.46 8.02 -52.49 -0.42 2.04 16 31 H 0.41 3.10 9.03 45.56 0.41 3.51 16 LS Contribution 301.18 15.07 4.54 4.54 Total: -1.00 -32.30 301.18 -4.81 -37.12 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -1.88 Total: -0.08 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: -0.79 Total: 12.44 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 1.02 Total: -49.52 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.16 Total: -17.65 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -2.51 Total: -2.78 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.30 -4.81 -37.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320618909.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.167 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds