Wall clock time and date at job start Tue Mar 31 2020 05:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00387 * 2 1 4 4 C 1.50695 * 109.47425 * 179.97438 * 3 2 1 5 5 N 1.30944 * 123.03985 * 270.00070 * 4 3 2 6 6 C 1.29370 * 117.46845 * 180.02562 * 5 4 3 7 7 S 1.70919 * 110.59603 * 359.74130 * 6 5 4 8 8 C 1.36773 * 123.04183 * 89.99687 * 4 3 2 9 9 C 1.46569 * 126.18025 * 359.97438 * 8 4 3 10 10 O 1.21723 * 119.99514 * 7.27984 * 9 8 4 11 11 N 1.34777 * 120.00209 * 187.28498 * 9 8 4 12 12 C 1.36886 * 119.99749 * 177.05042 * 11 9 8 13 13 H 1.08000 * 120.00080 * 337.12714 * 12 11 9 14 14 C 1.39011 * 119.99484 * 156.85133 * 12 11 9 15 15 N 1.31394 * 120.00552 * 356.76903 * 14 12 11 16 16 Si 1.86803 * 119.99741 * 176.76762 * 14 12 11 17 17 H 1.48497 * 109.47214 * 60.00107 * 16 14 12 18 18 H 1.48500 * 109.47055 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47027 * 299.99758 * 16 14 12 20 20 C 1.46501 * 119.99876 * 357.05178 * 11 9 8 21 21 C 1.47201 * 109.46668 * 278.09774 * 20 11 9 22 22 N 7.18040 * 143.18666 * 315.18581 * 2 1 3 23 23 H 1.09004 * 109.46950 * 59.99962 * 1 2 3 24 24 H 1.08993 * 109.47521 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46664 * 300.00581 * 1 2 3 26 26 H 1.09005 * 109.47248 * 59.99433 * 3 2 1 27 27 H 1.09006 * 109.46903 * 299.99984 * 3 2 1 28 28 H 1.08011 * 124.70264 * 179.97438 * 6 5 4 29 29 H 0.97001 * 120.00364 * 180.02562 * 15 14 12 30 30 H 1.08999 * 109.47289 * 38.09825 * 20 11 9 31 31 H 1.08998 * 109.46706 * 158.10137 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2238 1.1302 1.0986 6 6 5.5075 1.0290 0.9736 7 16 5.9493 0.9871 -0.6770 8 6 4.2565 1.1272 -1.1456 9 6 3.7386 1.1675 -2.5162 10 8 2.5593 1.3943 -2.7147 11 7 4.5682 0.9531 -3.5566 12 6 4.0737 0.9307 -4.8328 13 1 3.0295 0.7141 -5.0036 14 6 4.9144 1.1925 -5.9085 15 7 6.1682 1.5237 -5.6971 16 14 4.2615 1.0735 -7.6546 17 1 3.1429 2.0341 -7.8314 18 1 5.3488 1.3974 -8.6128 19 1 3.7739 -0.3061 -7.9078 20 6 5.9990 0.7441 -3.3215 21 6 6.6647 2.0467 -3.1575 22 7 7.1776 3.0522 -3.0325 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8464 -0.8900 28 1 6.2032 0.9745 1.7979 29 1 6.7547 1.7067 -6.4477 30 1 6.1358 0.1498 -2.4181 31 1 6.4338 0.2183 -4.1716 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322973253.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:47 Heat of formation + Delta-G solvation = 22.083548 kcal Electronic energy + Delta-G solvation = -19845.146548 eV Core-core repulsion = 16641.409202 eV Total energy + Delta-G solvation = -3203.737346 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.77134 -38.64539 -37.11421 -35.94865 -34.57135 -32.18688 -30.77669 -28.12583 -27.65228 -26.00913 -24.71815 -24.10024 -21.24169 -18.53210 -18.29139 -18.04068 -16.76603 -16.17683 -16.03503 -15.52295 -15.06049 -14.79972 -14.46999 -14.10781 -13.99680 -13.57384 -13.32792 -12.84235 -12.43758 -12.10654 -11.92790 -11.82589 -11.51606 -11.36025 -11.20064 -10.99790 -10.76417 -10.69650 -10.55795 -9.54666 -9.42621 -9.22069 -8.95387 -8.72535 -8.56458 -8.23102 -6.71011 -4.26369 0.65767 1.60998 2.00347 2.79424 3.06082 3.10194 3.12079 3.43814 3.69844 3.92571 3.94719 4.27433 4.54693 4.70248 4.73170 4.97223 5.33381 5.37663 5.49913 5.56148 5.69059 5.83505 5.86670 5.89937 6.10380 6.43141 6.49108 7.20811 7.47489 7.63349 8.00977 8.05197 8.52519 8.73278 8.88260 9.45701 10.30695 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.018043 B = 0.007380 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.462883 B = 3793.197286 C = 5114.780968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.381 6.381 3 C 0.136 3.864 4 C 0.100 3.900 5 N -0.461 5.461 6 C -0.031 4.031 7 S 0.177 5.823 8 C -0.229 4.229 9 C 0.519 3.481 10 O -0.553 6.553 11 N -0.425 5.425 12 C -0.293 4.293 13 H 0.114 0.886 14 C 0.031 3.969 15 N -0.880 5.880 16 Si 0.943 3.057 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.268 1.268 20 C 0.206 3.794 21 C 0.242 3.758 22 N -0.457 5.457 23 H 0.045 0.955 24 H 0.082 0.918 25 H 0.035 0.965 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.193 0.807 29 H 0.280 0.720 30 H 0.080 0.920 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.739 -4.436 6.959 8.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.300 6.300 3 C 0.057 3.943 4 C -0.038 4.038 5 N -0.175 5.175 6 C -0.326 4.326 7 S 0.434 5.566 8 C -0.355 4.355 9 C 0.308 3.692 10 O -0.437 6.437 11 N -0.143 5.143 12 C -0.421 4.421 13 H 0.132 0.868 14 C -0.173 4.173 15 N -0.519 5.519 16 Si 0.768 3.232 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.193 1.193 20 C 0.077 3.923 21 C -0.077 4.077 22 N -0.137 5.137 23 H 0.064 0.936 24 H 0.100 0.900 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.114 0.886 28 H 0.210 0.790 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.496 -3.035 6.984 7.631 hybrid contribution -1.124 -0.051 -0.739 1.346 sum -0.628 -3.086 6.246 6.995 Atomic orbital electron populations 1.22665 0.81202 1.02291 0.99860 1.87881 1.19378 1.27260 1.95459 1.20962 0.85568 0.85574 1.02151 1.20245 0.96594 1.01610 0.85391 1.65940 1.05272 1.14581 1.31711 1.28790 0.95403 1.05080 1.03320 1.84551 1.06956 1.64816 1.00297 1.26264 0.95157 1.13789 1.00259 1.16571 0.86971 0.83970 0.81726 1.90631 1.15596 1.53846 1.83578 1.43507 1.04276 1.59996 1.06517 1.19859 0.97645 1.44980 0.79589 0.86822 1.25513 0.95425 0.95035 1.01341 1.69677 1.05249 1.43578 1.33422 0.85706 0.78502 0.79331 0.79642 1.19483 1.20604 1.19321 1.19248 0.82712 0.87815 1.02535 1.28942 0.93464 0.95187 0.90122 1.80904 1.09467 1.10800 1.12483 0.93628 0.89997 0.94613 0.92740 0.88588 0.79006 0.90866 0.90367 0.82326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 11.01 101.05 1.11 1.62 16 2 O -0.38 -7.13 10.69 -35.23 -0.38 -7.50 16 3 C 0.14 2.54 5.86 36.00 0.21 2.75 16 4 C 0.10 1.98 6.46 -83.50 -0.54 1.44 16 5 N -0.46 -8.39 10.49 -11.30 -0.12 -8.50 16 6 C -0.03 -0.47 12.21 51.73 0.63 0.16 16 7 S 0.18 2.88 16.53 -107.50 -1.78 1.10 16 8 C -0.23 -4.71 6.27 -36.75 -0.23 -4.94 16 9 C 0.52 12.24 7.48 -12.90 -0.10 12.14 16 10 O -0.55 -14.20 14.03 5.17 0.07 -14.13 16 11 N -0.42 -9.90 2.61 -119.46 -0.31 -10.21 16 12 C -0.29 -7.19 9.29 -15.01 -0.14 -7.33 16 13 H 0.11 2.87 7.41 -52.49 -0.39 2.48 16 14 C 0.03 0.72 5.24 -17.45 -0.09 0.63 16 15 N -0.88 -20.67 8.93 55.50 0.50 -20.18 16 16 Si 0.94 18.69 29.55 -169.99 -5.02 13.66 16 17 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 18 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 20 C 0.21 4.13 4.73 -6.83 -0.03 4.10 16 21 C 0.24 5.21 11.37 -20.77 -0.24 4.98 16 22 N -0.46 -10.42 18.54 42.14 0.78 -9.64 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.10 1.93 5.92 -51.93 -0.31 1.62 16 28 H 0.19 2.08 8.06 -52.48 -0.42 1.66 16 29 H 0.28 6.36 8.31 -40.82 -0.34 6.02 16 30 H 0.08 1.36 4.43 -22.31 -0.10 1.26 16 31 H 0.16 3.19 6.10 -51.93 -0.32 2.88 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -29.67 285.41 -3.73 -33.40 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -2.36 Total: 2.15 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: 0.59 Total: 15.55 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.85 Total: -48.53 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.30 Total: -21.63 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.66 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -1.78 Total: 1.10 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.67 -3.73 -33.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322973253.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.479 kcal (2) G-P(sol) polarization free energy of solvation -29.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds