Wall clock time and date at job start Tue Mar 31 2020 05:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31124 * 126.55131 * 2 1 4 4 C 1.34495 * 105.61797 * 180.11615 * 3 2 1 5 5 C 1.50699 * 126.29006 * 179.90408 * 4 3 2 6 6 S 1.81000 * 109.46881 * 269.71691 * 5 4 3 7 7 C 1.76206 * 99.99929 * 180.02562 * 6 5 4 8 8 N 1.32384 * 126.25696 * 0.02562 * 7 6 5 9 9 N 1.28511 * 110.20415 * 179.97438 * 8 7 6 10 10 C 1.33098 * 109.74841 * 0.02562 * 9 8 7 11 11 C 1.39778 * 126.57000 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99928 * 180.02562 * 11 10 9 13 13 C 1.40083 * 119.99583 * 0.02642 * 11 10 9 14 14 N 1.30819 * 120.00168 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99562 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47281 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47269 * 119.99965 * 15 13 11 18 18 H 1.48509 * 109.46677 * 239.99320 * 15 13 11 19 19 N 1.36671 * 126.25909 * 179.71272 * 7 6 5 20 20 C 1.46501 * 127.15088 * 0.03288 * 19 7 6 21 21 N 1.29947 * 107.41983 * 359.64300 * 4 3 2 22 22 O 1.21296 * 110.25471 * 0.22692 * 21 4 3 23 23 H 1.09000 * 109.47017 * 180.24983 * 1 2 3 24 24 H 1.08995 * 109.47619 * 300.24979 * 1 2 3 25 25 H 1.09000 * 109.46640 * 60.25905 * 1 2 3 26 26 H 1.09000 * 109.47247 * 149.71647 * 5 4 3 27 27 H 1.09001 * 109.47358 * 29.71073 * 5 4 3 28 28 H 0.96997 * 120.00016 * 180.02562 * 14 13 11 29 29 H 1.09001 * 109.46904 * 90.02547 * 20 19 7 30 30 H 1.09003 * 109.47048 * 210.02525 * 20 19 7 31 31 H 1.08995 * 109.47319 * 330.02386 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0533 0.0000 4 6 3.5441 0.5728 -0.0026 5 6 4.8112 1.3887 -0.0057 6 16 5.3191 1.7075 -1.7135 7 6 6.7807 2.6491 -1.4272 8 7 7.2823 2.9767 -0.2466 9 7 8.3563 3.6664 -0.3966 10 6 8.6113 3.8254 -1.6932 11 6 9.6901 4.5173 -2.2511 12 1 9.7942 4.5805 -3.3241 13 6 10.6361 5.1285 -1.4182 14 7 10.5097 5.0523 -0.1184 15 14 12.0775 6.0538 -2.1638 16 1 11.9916 5.9934 -3.6450 17 1 12.0374 7.4712 -1.7225 18 1 13.3496 5.4319 -1.7162 19 7 7.6071 3.1697 -2.3832 20 6 7.4584 3.0598 -3.8365 21 7 3.4645 -0.7242 0.0037 22 8 2.3029 -1.0736 0.0052 23 1 -0.3633 -1.0277 0.0045 24 1 -0.3634 0.5177 0.8877 25 1 -0.3632 0.5098 -0.8923 26 1 5.5982 0.8394 0.5109 27 1 4.6346 2.3360 0.5036 28 1 11.1646 5.4758 0.4583 29 1 6.8669 3.8977 -4.2056 30 1 8.4426 3.0755 -4.3047 31 1 6.9550 2.1243 -4.0804 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325013152.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:44 Heat of formation + Delta-G solvation = 138.012599 kcal Electronic energy + Delta-G solvation = -18538.138614 eV Core-core repulsion = 15371.721080 eV Total energy + Delta-G solvation = -3166.417534 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.069 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.70781 -40.55372 -36.20952 -33.99747 -33.72537 -33.34722 -29.88725 -29.30293 -28.74040 -26.52734 -25.56265 -23.74509 -21.80109 -20.87851 -20.43940 -18.34433 -17.62370 -17.36175 -16.26575 -15.48531 -15.20929 -14.76763 -14.69922 -14.22779 -13.78265 -13.69843 -13.37095 -13.23769 -13.01088 -12.34106 -12.28234 -12.18445 -11.73452 -11.34484 -11.33913 -11.13794 -10.97747 -10.56219 -10.36998 -9.84229 -9.78030 -9.66704 -8.75520 -8.48713 -8.43677 -6.91658 -6.67920 -4.61342 0.96104 1.55028 2.46454 2.69720 2.70509 2.88382 3.05230 3.09946 3.31460 3.49183 3.85016 3.91990 4.19652 4.38312 4.76619 4.93127 4.97305 5.26966 5.29162 5.39554 5.52240 5.59747 5.80039 5.86448 5.93810 6.02215 6.70941 6.85765 7.20553 7.44230 7.83214 8.08025 8.14888 8.66858 8.81765 10.24552 10.58229 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.051190 B = 0.003404 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.850120 B = 8223.657418 C = 8506.209224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.171 3.829 3 N -0.470 5.470 4 C 0.191 3.809 5 C -0.009 4.009 6 S -0.020 6.020 7 C 0.041 3.959 8 N -0.283 5.283 9 N -0.331 5.331 10 C 0.348 3.652 11 C -0.446 4.446 12 H 0.085 0.915 13 C 0.078 3.922 14 N -0.735 5.735 15 Si 0.922 3.078 16 H -0.261 1.261 17 H -0.272 1.272 18 H -0.272 1.272 19 N -0.514 5.514 20 C 0.101 3.899 21 N -0.369 5.369 22 O 0.081 5.919 23 H 0.096 0.904 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.279 0.721 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.050 -7.449 -3.268 17.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.050 4.050 3 N -0.204 5.204 4 C -0.083 4.083 5 C -0.159 4.159 6 S 0.205 5.795 7 C -0.331 4.331 8 N -0.130 5.130 9 N -0.179 5.179 10 C 0.104 3.896 11 C -0.486 4.486 12 H 0.103 0.897 13 C -0.148 4.148 14 N -0.359 5.359 15 Si 0.745 3.255 16 H -0.185 1.185 17 H -0.197 1.197 18 H -0.197 1.197 19 N -0.216 5.216 20 C -0.044 4.044 21 N -0.075 5.075 22 O 0.019 5.981 23 H 0.114 0.886 24 H 0.121 0.879 25 H 0.122 0.878 26 H 0.137 0.863 27 H 0.141 0.859 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.539 -7.724 -2.511 16.654 hybrid contribution 1.096 0.762 -0.664 1.491 sum -13.443 -6.962 -3.175 15.468 Atomic orbital electron populations 1.20371 0.80151 1.05477 1.05719 1.28871 0.98966 0.80774 0.96369 1.71902 1.00024 1.28765 1.19731 1.24964 0.94267 0.87904 1.01123 1.21388 0.92077 1.02657 0.99814 1.84549 1.22798 1.65650 1.06492 1.25183 1.02602 1.15280 0.90042 1.74530 1.07234 1.12131 1.19075 1.75457 1.09208 1.21132 1.12118 1.21638 0.88573 0.92146 0.87227 1.18160 1.04959 1.30961 0.94490 0.89651 1.25817 0.98846 0.95585 0.94565 1.70018 1.31537 1.30673 1.03669 0.86051 0.80075 0.79261 0.80069 1.18513 1.19689 1.19708 1.46005 1.22782 1.47178 1.05672 1.21509 1.02714 1.01225 0.78948 1.74696 0.97128 1.15422 1.20303 1.85311 1.11440 1.35789 1.65546 0.88552 0.87870 0.87846 0.86318 0.85857 0.90953 0.92446 0.90226 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.01 0.38 0.11 16 2 C 0.17 1.82 8.51 -13.06 -0.11 1.71 16 3 N -0.47 -6.78 11.55 -9.87 -0.11 -6.89 16 4 C 0.19 3.06 7.47 -156.37 -1.17 1.89 16 5 C -0.01 -0.17 5.85 36.01 0.21 0.04 16 6 S -0.02 -0.38 21.77 -107.50 -2.34 -2.72 16 7 C 0.04 1.00 8.09 -87.28 -0.71 0.29 16 8 N -0.28 -7.85 11.62 30.89 0.36 -7.49 16 9 N -0.33 -10.04 10.48 31.26 0.33 -9.71 16 10 C 0.35 9.79 7.53 -154.81 -1.17 8.63 16 11 C -0.45 -11.81 9.04 -38.31 -0.35 -12.16 16 12 H 0.09 2.05 7.31 -52.49 -0.38 1.67 16 13 C 0.08 1.98 5.50 -17.29 -0.10 1.89 16 14 N -0.74 -20.21 11.94 55.56 0.66 -19.55 16 15 Si 0.92 18.49 29.56 -169.99 -5.03 13.46 16 16 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 17 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 N -0.51 -12.59 3.26 -123.17 -0.40 -12.99 16 20 C 0.10 1.87 10.87 59.85 0.65 2.52 16 21 N -0.37 -5.72 12.16 30.90 0.38 -5.34 16 22 O 0.08 1.00 11.31 18.10 0.20 1.21 16 23 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.12 2.16 8.14 -51.92 -0.42 1.74 16 27 H 0.12 2.23 8.14 -51.92 -0.42 1.81 16 28 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.37 7.54 -51.93 -0.39 0.98 16 31 H 0.07 1.08 7.84 -51.93 -0.41 0.68 16 LS Contribution 298.17 15.07 4.49 4.49 Total: -1.00 -34.90 298.17 -6.66 -41.56 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -2.85 Total: -0.95 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -2.35 Total: 4.92 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: 1.21 Total: -61.97 kcal Atomic # 8 Polarization: 1.00 SS G_CDS: 0.20 Total: 1.21 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -2.34 Total: -2.72 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.90 -6.66 -41.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325013152.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.571 kcal (2) G-P(sol) polarization free energy of solvation -34.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds