Wall clock time and date at job start Tue Mar 31 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47303 * 254.82047 * 3 2 1 5 5 C 1.36935 * 119.99661 * 263.92757 * 4 3 2 6 6 H 1.08003 * 119.99991 * 199.50270 * 5 4 3 7 7 C 1.38816 * 120.00132 * 19.50370 * 5 4 3 8 8 N 1.31616 * 119.99946 * 12.46573 * 7 5 4 9 9 Si 1.86797 * 119.99967 * 192.47128 * 7 5 4 10 10 H 1.48503 * 109.47317 * 84.97893 * 9 7 5 11 11 H 1.48498 * 109.47169 * 204.97753 * 9 7 5 12 12 H 1.48505 * 109.47261 * 324.97781 * 9 7 5 13 13 C 1.46500 * 120.00090 * 84.20151 * 4 3 2 14 14 C 1.52998 * 109.46978 * 269.72265 * 13 4 3 15 15 C 1.50700 * 109.47070 * 179.97438 * 14 13 4 16 16 C 1.38237 * 119.98439 * 264.73100 * 15 14 13 17 17 C 1.38185 * 120.03924 * 179.72765 * 16 15 14 18 18 C 1.38482 * 120.00025 * 0.54195 * 17 16 15 19 19 F 1.35106 * 120.02366 * 179.75011 * 18 17 16 20 20 C 1.38420 * 119.96119 * 359.73261 * 18 17 16 21 21 C 1.38325 * 119.95993 * 359.97438 * 20 18 17 22 22 Cl 1.73604 * 119.99966 * 179.97438 * 21 20 18 23 23 H 4.40643 * 5.51391 * 179.97438 * 4 1 2 24 24 H 1.08995 * 109.47436 * 134.81359 * 3 2 1 25 25 H 1.09004 * 109.47074 * 14.81824 * 3 2 1 26 26 H 0.97002 * 120.00231 * 180.02562 * 8 7 5 27 27 H 1.08990 * 109.47073 * 29.72850 * 13 4 3 28 28 H 1.09001 * 109.46754 * 149.72706 * 13 4 3 29 29 H 1.08996 * 109.47676 * 300.00644 * 14 13 4 30 30 H 1.09001 * 109.47018 * 60.00603 * 14 13 4 31 31 H 1.08003 * 119.98051 * 359.97438 * 16 15 14 32 32 H 1.08002 * 120.00204 * 180.27412 * 17 16 15 33 33 H 1.08006 * 120.01439 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.3625 1.3330 5 6 3.4802 1.6589 1.6068 6 1 4.1200 1.8809 2.4480 7 6 3.0084 2.6877 0.8031 8 7 2.0439 2.4573 -0.0623 9 14 3.7426 4.3991 0.9497 10 1 4.9610 4.4891 0.1055 11 1 2.7493 5.4045 0.4940 12 1 4.1011 4.6642 2.3662 13 6 3.2580 -0.6636 2.3713 14 6 1.9504 -0.7506 3.1607 15 6 2.0775 -1.8066 4.2284 16 6 1.6266 -3.0909 3.9870 17 6 1.7477 -4.0614 4.9631 18 6 2.3108 -3.7450 6.1881 19 9 2.4249 -4.6923 7.1446 20 6 2.7572 -2.4576 6.4318 21 6 2.6407 -1.4888 5.4514 22 17 3.1996 0.1263 5.7562 23 1 -1.0500 0.0002 -0.0001 24 1 3.0091 0.7251 -0.7290 25 1 3.0098 -0.9927 -0.2628 26 1 1.7145 3.1761 -0.6242 27 1 3.4669 -1.6271 1.9067 28 1 4.0730 -0.4012 3.0460 29 1 1.7415 0.2130 3.6253 30 1 1.1354 -1.0130 2.4860 31 1 1.1829 -3.3368 3.0335 32 1 1.3992 -5.0657 4.7723 33 1 3.1969 -2.2100 7.3867 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335117751.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:58 Heat of formation + Delta-G solvation = 49.266352 kcal Electronic energy + Delta-G solvation = -19071.146024 eV Core-core repulsion = 15846.623745 eV Total energy + Delta-G solvation = -3224.522279 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.068 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.95662 -39.29947 -36.30656 -36.25764 -33.03252 -31.53852 -30.97527 -30.65639 -27.67359 -26.00281 -23.96435 -23.09431 -21.63271 -20.37737 -17.80498 -17.46930 -16.67433 -16.43076 -15.68785 -15.48123 -14.99788 -14.53156 -14.03071 -13.80363 -13.68803 -13.40006 -13.24637 -12.89611 -12.19981 -11.81034 -11.64550 -11.37337 -11.22757 -11.15887 -11.06511 -10.79901 -10.58226 -10.28844 -10.21760 -9.85203 -9.00539 -8.96164 -8.81170 -8.52221 -8.32286 -6.97914 -5.78197 -3.23925 1.02155 1.09621 2.22743 3.36076 3.42947 3.43794 3.46201 4.16316 4.23028 4.38815 4.52338 4.69580 4.84172 4.95274 5.20928 5.37796 5.50428 5.67987 5.81686 5.84292 5.89393 6.02180 6.16493 6.22745 6.28216 6.42726 6.69518 6.74802 6.86104 7.01654 7.31406 7.47109 7.73605 8.29923 9.11530 9.19491 9.75401 10.21204 11.24548 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.022048 B = 0.005167 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.625277 B = 5418.080211 C = 6377.483902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.086 4.086 3 C 0.264 3.736 4 N -0.584 5.584 5 C -0.255 4.255 6 H 0.075 0.925 7 C 0.001 3.999 8 N -0.897 5.897 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.281 1.281 13 C 0.158 3.842 14 C -0.111 4.111 15 C -0.061 4.061 16 C -0.083 4.083 17 C -0.147 4.147 18 C 0.089 3.911 19 F -0.141 7.141 20 C -0.145 4.145 21 C -0.014 4.014 22 Cl -0.047 7.047 23 H 0.188 0.812 24 H 0.106 0.894 25 H 0.032 0.968 26 H 0.255 0.745 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.142 -11.020 8.537 13.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.331 4.331 2 C -0.089 4.089 3 C 0.139 3.861 4 N -0.302 5.302 5 C -0.384 4.384 6 H 0.093 0.907 7 C -0.197 4.197 8 N -0.541 5.541 9 Si 0.735 3.265 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.206 1.206 13 C 0.031 3.969 14 C -0.151 4.151 15 C -0.063 4.063 16 C -0.101 4.101 17 C -0.166 4.166 18 C 0.069 3.931 19 F -0.119 7.119 20 C -0.165 4.165 21 C -0.041 4.041 22 Cl -0.017 7.017 23 H 0.205 0.795 24 H 0.123 0.877 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.191 -10.737 8.468 13.676 hybrid contribution -0.165 1.063 0.436 1.161 sum 0.026 -9.675 8.904 13.149 Atomic orbital electron populations 1.24160 0.95322 1.08886 1.04744 1.24335 0.95256 0.93171 0.96114 1.17948 0.82765 0.96751 0.88604 1.44162 1.74240 1.05497 1.06328 1.19262 1.23760 0.82217 1.13169 0.90699 1.24989 0.96924 0.97925 0.99848 1.70010 1.26558 1.31585 1.25961 0.86261 0.78275 0.84151 0.77778 1.21358 1.21798 1.20632 1.20890 0.93709 0.91854 0.90439 1.21589 1.02591 0.96100 0.94838 1.20278 0.95771 0.96257 0.94024 1.20946 0.98628 0.91305 0.99232 1.21191 1.01771 1.01150 0.92444 1.17381 1.02763 0.85890 0.87027 1.91490 1.94302 1.63316 1.62813 1.20907 1.03687 0.91336 1.00561 1.20585 1.01441 0.87332 0.94758 1.98407 1.87446 1.20202 1.95690 0.79458 0.87653 0.94986 0.93472 0.94186 0.92968 0.89852 0.90780 0.84157 0.84543 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -6.87 19.25 29.55 0.57 -6.30 16 2 C -0.09 -2.01 10.56 -37.12 -0.39 -2.40 16 3 C 0.26 6.06 5.44 -6.83 -0.04 6.02 16 4 N -0.58 -13.64 2.50 -176.58 -0.44 -14.08 16 5 C -0.25 -6.58 9.70 -15.06 -0.15 -6.73 16 6 H 0.08 1.92 7.84 -52.48 -0.41 1.51 16 7 C 0.00 0.04 5.08 -17.43 -0.09 -0.05 16 8 N -0.90 -24.74 9.06 55.49 0.50 -24.24 16 9 Si 0.91 21.28 29.57 -169.99 -5.03 16.26 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 13 C 0.16 3.07 5.68 -4.04 -0.02 3.05 16 14 C -0.11 -2.01 5.04 -27.88 -0.14 -2.15 16 15 C -0.06 -0.92 5.14 -104.58 -0.54 -1.46 16 16 C -0.08 -1.05 9.67 -39.60 -0.38 -1.44 16 17 C -0.15 -1.69 10.03 -39.51 -0.40 -2.09 16 18 C 0.09 1.11 7.30 -39.42 -0.29 0.82 16 19 F -0.14 -1.75 17.27 2.25 0.04 -1.71 16 20 C -0.15 -1.87 9.81 -39.48 -0.39 -2.26 16 21 C -0.01 -0.20 6.31 -39.51 -0.25 -0.45 16 22 Cl -0.05 -0.72 27.16 -51.86 -1.41 -2.13 16 23 H 0.19 3.50 7.80 -54.09 -0.42 3.08 16 24 H 0.11 2.66 6.28 -51.93 -0.33 2.34 16 25 H 0.03 0.64 7.97 -51.93 -0.41 0.23 16 26 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.04 0.71 7.95 -51.93 -0.41 0.30 16 28 H 0.05 1.01 7.78 -51.93 -0.40 0.61 16 29 H 0.08 1.70 7.12 -51.93 -0.37 1.33 16 30 H 0.07 1.41 7.12 -51.93 -0.37 1.04 16 31 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 32 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 308.25 15.07 4.65 4.65 Total: -1.00 -27.84 308.25 -7.72 -35.56 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -3.53 Total: 1.13 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -2.50 Total: -15.43 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.06 Total: -38.32 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.26 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.41 Total: -2.13 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.84 -7.72 -35.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335117751.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.827 kcal (2) G-P(sol) polarization free energy of solvation -27.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds