Wall clock time and date at job start Tue Mar 31 2020 05:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47046 * 214.04646 * 3 2 1 5 5 N 1.46500 * 109.47490 * 180.02562 * 4 3 2 6 6 C 1.46502 * 119.99833 * 95.15454 * 5 4 3 7 7 C 1.50695 * 109.46863 * 95.10777 * 6 5 4 8 8 H 1.07995 * 120.00591 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99938 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99731 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00055 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47231 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47644 * 119.99812 * 11 9 7 14 14 H 1.48503 * 109.46825 * 239.99383 * 11 9 7 15 15 C 1.34777 * 119.99756 * 275.15747 * 5 4 3 16 16 O 1.21707 * 120.00003 * 4.97339 * 15 5 4 17 17 C 1.46551 * 119.99946 * 184.97001 * 15 5 4 18 18 C 1.37924 * 126.23526 * 187.03617 * 17 15 5 19 19 C 1.39753 * 107.12580 * 179.97438 * 18 17 15 20 20 C 1.35662 * 107.88323 * 359.97438 * 19 18 17 21 21 Cl 1.73601 * 125.57565 * 180.02562 * 20 19 18 22 22 N 1.35577 * 108.84622 * 359.77212 * 20 19 18 23 23 H 0.97006 * 125.69443 * 180.23361 * 22 20 19 24 24 H 1.09000 * 109.47293 * 94.05086 * 3 2 1 25 25 H 1.08998 * 109.47723 * 334.04371 * 3 2 1 26 26 H 1.09003 * 109.47321 * 59.99650 * 4 3 2 27 27 H 1.08998 * 109.47351 * 300.00178 * 4 3 2 28 28 H 1.09004 * 109.46943 * 215.10245 * 6 5 4 29 29 H 1.08998 * 109.47350 * 335.10014 * 6 5 4 30 30 H 0.97003 * 119.99798 * 180.02562 * 10 9 7 31 31 H 1.08007 * 126.43761 * 359.96773 * 18 17 15 32 32 H 1.07997 * 126.05914 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1174 1.1962 0.8076 5 7 4.5824 1.1972 0.8072 6 6 5.3140 1.9999 -0.1761 7 6 5.6738 3.3316 0.4303 8 1 5.3860 3.5578 1.4464 9 6 6.3696 4.2619 -0.3124 10 7 6.7197 3.9867 -1.5499 11 14 6.8163 5.9125 0.4396 12 1 6.3117 5.9736 1.8348 13 1 8.2926 6.0734 0.4393 14 1 6.1994 7.0028 -0.3578 15 6 5.2571 0.4598 1.7114 16 8 4.6527 -0.2765 2.4689 17 6 6.7184 0.5446 1.7823 18 6 7.5442 -0.2441 2.5558 19 6 8.8557 0.1756 2.3174 20 6 8.8112 1.1923 1.4204 21 17 10.1854 2.0530 0.8003 22 7 7.5183 1.4226 1.0833 23 1 7.2080 2.0949 0.4565 24 1 2.9713 0.0734 -1.0251 25 1 2.9718 -0.9231 0.4498 26 1 2.7540 1.1235 1.8327 27 1 2.7536 2.1200 0.3579 28 1 6.2241 1.4758 -0.4681 29 1 4.6880 2.1577 -1.0544 30 1 7.2095 4.6410 -2.0723 31 1 7.2353 -1.0371 3.2209 32 1 9.7468 -0.2370 2.7669 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518997014.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:11 Heat of formation + Delta-G solvation = 37.458371 kcal Electronic energy + Delta-G solvation = -19604.458334 eV Core-core repulsion = 16399.343984 eV Total energy + Delta-G solvation = -3205.114350 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.94263 -38.77915 -36.69141 -36.21980 -35.58156 -33.41921 -31.61524 -30.34176 -28.48210 -27.60704 -24.39369 -23.52844 -21.13265 -20.16368 -19.47490 -17.63481 -17.23292 -16.81359 -16.05862 -15.47318 -14.80859 -14.72962 -14.51581 -13.90249 -13.62897 -13.33649 -13.09943 -12.71093 -12.56411 -12.55522 -12.29702 -12.12975 -11.77384 -11.51602 -11.29768 -11.24151 -11.02997 -10.80849 -10.74010 -10.47550 -10.14094 -9.54592 -9.03096 -8.55606 -8.21106 -7.62896 -6.63925 -4.78518 1.94873 2.16928 2.80232 2.90077 2.99192 3.01456 3.11082 3.14723 3.49280 3.86871 4.00405 4.16438 4.31801 4.69306 5.08599 5.24459 5.37521 5.59903 5.67818 5.84395 5.95329 6.12236 6.22645 6.35416 6.42509 6.67140 6.98800 7.11512 7.31589 7.35256 7.49451 7.65672 7.90167 8.08785 8.37256 8.67544 8.93895 10.38328 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.014197 B = 0.007054 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.726908 B = 3968.404853 C = 5464.169400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.221 3.779 3 C -0.047 4.047 4 C 0.130 3.870 5 N -0.597 5.597 6 C 0.216 3.784 7 C -0.568 4.568 8 H 0.074 0.926 9 C 0.069 3.931 10 N -0.874 5.874 11 Si 0.894 3.106 12 H -0.266 1.266 13 H -0.275 1.275 14 H -0.276 1.276 15 C 0.592 3.408 16 O -0.553 6.553 17 C -0.025 4.025 18 C -0.124 4.124 19 C -0.196 4.196 20 C 0.077 3.923 21 Cl -0.032 7.032 22 N -0.500 5.500 23 H 0.453 0.547 24 H 0.111 0.889 25 H 0.114 0.886 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.038 0.962 29 H 0.053 0.947 30 H 0.275 0.725 31 H 0.148 0.852 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.885 -4.307 1.778 6.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.097 4.097 3 C -0.089 4.089 4 C 0.005 3.995 5 N -0.328 5.328 6 C 0.096 3.904 7 C -0.607 4.607 8 H 0.092 0.908 9 C -0.138 4.138 10 N -0.509 5.509 11 Si 0.720 3.280 12 H -0.190 1.190 13 H -0.200 1.200 14 H -0.201 1.201 15 C 0.382 3.618 16 O -0.432 6.432 17 C -0.142 4.142 18 C -0.151 4.151 19 C -0.222 4.222 20 C -0.070 4.070 21 Cl -0.004 7.004 22 N -0.114 5.114 23 H 0.315 0.685 24 H 0.129 0.871 25 H 0.132 0.868 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.166 0.834 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.954 -4.336 1.734 5.063 hybrid contribution 0.893 1.517 -0.222 1.774 sum 2.848 -2.820 1.512 4.283 Atomic orbital electron populations 1.81181 1.13053 1.09044 1.09359 1.29079 0.95085 0.92853 0.92684 1.19795 0.81386 1.03213 1.04465 1.21152 0.80671 0.96729 1.00935 1.48038 1.05620 1.45671 1.33426 1.19850 0.92742 0.89787 0.88043 1.21686 1.38106 0.99870 1.01012 0.90824 1.25086 0.94979 0.99082 0.94647 1.69915 1.36656 1.36278 1.08053 0.86433 0.78894 0.82690 0.79965 1.19050 1.20002 1.20126 1.17028 0.85013 0.79658 0.80069 1.90761 1.68706 1.40469 1.43308 1.20292 0.90930 0.99131 1.03802 1.21082 0.90998 1.01339 1.01647 1.20493 0.98108 1.00103 1.03519 1.21138 0.82352 1.00172 1.03347 1.98360 1.38074 1.76815 1.87118 1.44549 1.03663 1.29076 1.34076 0.68514 0.87105 0.86847 0.89905 0.89055 0.94423 0.92871 0.91506 0.83440 0.83921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.24 18.54 42.15 0.78 -6.46 16 2 C 0.22 3.04 15.43 -20.76 -0.32 2.72 16 3 C -0.05 -0.58 5.99 -29.52 -0.18 -0.76 16 4 C 0.13 1.94 5.25 -4.04 -0.02 1.92 16 5 N -0.60 -10.76 2.48 -176.65 -0.44 -11.20 16 6 C 0.22 4.36 4.68 -5.20 -0.02 4.34 16 7 C -0.57 -12.75 7.11 -34.44 -0.24 -13.00 16 8 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.07 1.59 5.01 -17.82 -0.09 1.51 16 10 N -0.87 -20.70 13.29 55.43 0.74 -19.96 16 11 Si 0.89 18.65 29.54 -169.99 -5.02 13.63 16 12 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 13 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 14 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 15 C 0.59 11.42 7.55 -12.91 -0.10 11.33 16 16 O -0.55 -11.17 16.55 5.18 0.09 -11.08 16 17 C -0.02 -0.48 6.61 -81.94 -0.54 -1.02 16 18 C -0.12 -2.12 10.65 -39.13 -0.42 -2.53 16 19 C -0.20 -3.16 10.78 -39.94 -0.43 -3.59 16 20 C 0.08 1.38 7.74 -16.82 -0.13 1.25 16 21 Cl -0.03 -0.52 29.30 -51.86 -1.52 -2.04 16 22 N -0.50 -9.88 4.77 -6.54 -0.03 -9.92 16 23 H 0.45 9.60 3.14 -40.82 -0.13 9.47 16 24 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.11 1.38 8.08 -51.93 -0.42 0.96 16 26 H 0.08 1.26 7.66 -51.93 -0.40 0.86 16 27 H 0.09 1.32 8.03 -51.93 -0.42 0.90 16 28 H 0.04 0.81 5.42 -51.93 -0.28 0.53 16 29 H 0.05 1.08 8.03 -51.93 -0.42 0.66 16 30 H 0.28 6.26 8.31 -40.82 -0.34 5.92 16 31 H 0.15 2.23 8.06 -52.48 -0.42 1.81 16 32 H 0.14 1.87 8.06 -52.49 -0.42 1.44 16 LS Contribution 303.33 15.07 4.57 4.57 Total: -1.00 -25.34 303.33 -6.20 -31.54 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -2.87 Total: 8.75 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -2.49 Total: 2.17 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 1.05 Total: -47.53 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.63 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.52 Total: -2.04 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -25.34 -6.20 -31.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518997014.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.997 kcal (2) G-P(sol) polarization free energy of solvation -25.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds