Wall clock time and date at job start Tue Mar 31 2020 05:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99738 * 2 1 4 4 H 1.48501 * 109.47321 * 270.00341 * 3 2 1 5 5 H 1.48507 * 109.47347 * 30.00062 * 3 2 1 6 6 H 1.48498 * 109.47405 * 150.00258 * 3 2 1 7 7 C 1.37880 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99545 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46740 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46740 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00303 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99902 * 180.02562 * 11 10 9 14 14 C 1.39352 * 120.00087 * 184.45225 * 13 11 10 15 15 C 1.39061 * 120.18077 * 285.37784 * 14 13 11 16 16 F 1.35105 * 119.98117 * 0.02679 * 15 14 13 17 17 C 1.38180 * 120.03477 * 179.97438 * 15 14 13 18 18 C 1.38589 * 120.39380 * 0.04575 * 17 15 14 19 19 C 1.37754 * 120.35744 * 359.67397 * 18 17 15 20 20 C 1.39789 * 119.95307 * 0.58038 * 19 18 17 21 21 C 1.47399 * 120.19193 * 179.71759 * 20 19 18 22 22 O 1.21514 * 120.00087 * 184.39808 * 21 20 19 23 23 O 1.34752 * 119.99234 * 4.12358 * 21 20 19 24 24 H 0.96997 * 120.00303 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47253 * 59.99898 * 9 7 2 26 26 H 1.08997 * 109.47017 * 299.99661 * 9 7 2 27 27 H 1.08994 * 109.46576 * 60.00072 * 10 9 7 28 28 H 1.08997 * 109.46711 * 299.99968 * 10 9 7 29 29 H 0.97004 * 119.99967 * 4.45405 * 13 11 10 30 30 H 1.07996 * 119.80852 * 180.02562 * 17 15 14 31 31 H 1.08002 * 119.82246 * 179.97438 * 18 17 15 32 32 H 1.07994 * 120.02422 * 180.29903 * 19 18 17 33 33 H 0.96710 * 116.99298 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4919 -4.9672 -0.0025 12 8 0.2791 -4.9672 -0.0015 13 7 2.1658 -6.1344 -0.0031 14 6 1.4722 -7.3393 -0.0974 15 6 0.7707 -7.8298 0.9986 16 9 0.7602 -7.1371 2.1585 17 6 0.0836 -9.0247 0.9016 18 6 0.0885 -9.7421 -0.2841 19 6 0.7733 -9.2685 -1.3816 20 6 1.4778 -8.0640 -1.2982 21 6 2.2174 -7.5555 -2.4674 22 8 2.8935 -6.5507 -2.3686 23 8 2.1481 -8.2081 -3.6443 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8727 -3.6046 0.8877 28 1 2.8713 -3.6038 -0.8923 29 1 3.1336 -6.1356 0.0621 30 1 -0.4603 -9.4020 1.7549 31 1 -0.4514 -10.6753 -0.3495 32 1 0.7695 -9.8296 -2.3043 33 1 2.6507 -7.8367 -4.3824 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574785664.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:33 Heat of formation + Delta-G solvation = -145.509162 kcal Electronic energy + Delta-G solvation = -21478.403984 eV Core-core repulsion = 17804.726441 eV Total energy + Delta-G solvation = -3673.677544 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.93984 -40.84777 -39.40636 -38.30368 -36.27840 -34.54626 -33.42606 -31.48498 -31.08305 -29.58455 -25.91730 -24.92894 -23.12700 -21.90822 -21.23878 -19.82033 -18.57969 -17.90283 -17.34626 -16.93917 -16.55558 -15.97685 -15.91505 -15.57482 -15.36892 -15.04359 -14.62558 -14.38965 -13.91239 -13.30934 -13.27645 -12.60736 -12.49052 -12.23690 -12.12139 -11.99776 -11.69932 -11.13812 -10.90280 -10.81932 -10.57159 -9.91765 -9.67882 -9.62117 -9.26018 -9.20931 -9.05450 -8.73281 -8.28559 -5.92564 -3.96722 0.25466 0.81195 2.28037 2.69098 3.12724 3.20940 3.36334 3.40056 3.42434 3.45641 4.04878 4.46133 4.50535 4.55515 4.76809 4.91336 5.14316 5.42389 5.53971 5.63089 5.70350 5.77288 5.89601 6.23340 6.26064 6.29563 6.32728 6.81224 6.91102 7.68732 7.69741 7.78233 7.89421 8.10290 8.41362 8.68639 9.11268 9.66483 11.18538 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023620 B = 0.004259 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.159571 B = 6573.058710 C = 7337.800867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.037 3.963 10 C -0.125 4.125 11 C 0.522 3.478 12 O -0.522 6.522 13 N -0.690 5.690 14 C 0.181 3.819 15 C 0.099 3.901 16 F -0.122 7.122 17 C -0.112 4.112 18 C -0.109 4.109 19 C -0.067 4.067 20 C -0.110 4.110 21 C 0.525 3.475 22 O -0.490 6.490 23 O -0.513 6.513 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.024 0.976 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.415 0.585 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.204 -23.845 -2.804 24.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.164 4.164 11 C 0.312 3.688 12 O -0.396 6.396 13 N -0.343 5.343 14 C 0.086 3.914 15 C 0.078 3.922 16 F -0.100 7.100 17 C -0.132 4.132 18 C -0.127 4.127 19 C -0.086 4.086 20 C -0.113 4.113 21 C 0.368 3.632 22 O -0.378 6.378 23 O -0.326 6.326 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.253 0.747 30 H 0.164 0.836 31 H 0.162 0.838 32 H 0.165 0.835 33 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 3.140 -23.487 -2.407 23.818 hybrid contribution 1.183 1.261 -0.294 1.754 sum 4.323 -22.227 -2.701 22.804 Atomic orbital electron populations 1.70002 1.06068 1.26553 1.50290 1.25022 0.94821 0.99219 0.95310 0.86577 0.79777 0.83461 0.78050 1.20687 1.21231 1.19856 1.21212 0.92977 0.90914 1.51284 0.92518 1.18918 0.93157 0.89340 0.98616 1.21868 1.00783 0.90823 1.02973 1.21812 0.88620 0.85098 0.73230 1.90688 1.14394 1.87217 1.47250 1.43607 1.10703 1.02801 1.77189 1.17489 0.95487 0.87794 0.90637 1.17795 1.00560 0.91684 0.82164 1.91565 1.94763 1.78519 1.45141 1.21390 0.98449 0.93238 1.00102 1.21004 0.99469 1.00497 0.91696 1.21417 0.93788 0.93836 0.99560 1.19151 1.03270 0.98091 0.90834 1.20490 0.79027 0.81028 0.82620 1.90953 1.38444 1.23886 1.84475 1.84517 1.70017 1.56838 1.21221 0.92977 0.95860 0.95757 0.89950 0.89536 0.74674 0.83638 0.83848 0.83487 0.72452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.05 13.29 55.43 0.74 -27.31 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -15.38 9.11 -34.44 -0.31 -15.70 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 10 C -0.12 -2.73 5.64 -27.88 -0.16 -2.89 16 11 C 0.52 11.03 7.69 -10.99 -0.08 10.95 16 12 O -0.52 -13.10 15.80 5.56 0.09 -13.02 16 13 N -0.69 -11.39 3.19 -9.62 -0.03 -11.42 16 14 C 0.18 2.70 5.40 -83.38 -0.45 2.25 16 15 C 0.10 1.39 7.05 -39.30 -0.28 1.11 16 16 F -0.12 -1.97 17.02 2.25 0.04 -1.93 16 17 C -0.11 -1.11 10.01 -39.47 -0.39 -1.50 16 18 C -0.11 -0.84 10.02 -39.63 -0.40 -1.24 16 19 C -0.07 -0.61 9.61 -39.18 -0.38 -0.98 16 20 C -0.11 -1.38 5.89 -104.83 -0.62 -2.00 16 21 C 0.53 6.67 8.25 34.46 0.28 6.96 16 22 O -0.49 -7.68 15.65 -19.28 -0.30 -7.99 16 23 O -0.51 -4.50 12.69 -40.63 -0.52 -5.01 16 24 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 25 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 26 H 0.02 0.74 8.10 -51.93 -0.42 0.32 16 27 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 28 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 29 H 0.41 5.76 8.54 -40.82 -0.35 5.41 16 30 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 31 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 32 H 0.15 0.96 7.62 -52.49 -0.40 0.56 16 33 H 0.42 1.93 9.11 45.56 0.42 2.35 16 LS Contribution 306.79 15.07 4.62 4.62 Total: -1.00 -38.05 306.79 -5.79 -43.84 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -2.41 Total: 1.58 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -3.00 Total: -0.50 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.71 Total: -38.74 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.73 Total: -26.02 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -38.05 -5.79 -43.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574785664.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.668 kcal (2) G-P(sol) polarization free energy of solvation -38.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds