Wall clock time and date at job start Tue Mar 31 2020 05:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86792 * 120.00325 * 2 1 4 4 H 1.48494 * 109.47372 * 274.98885 * 3 2 1 5 5 H 1.48509 * 109.46844 * 34.98557 * 3 2 1 6 6 H 1.48495 * 109.47416 * 154.98500 * 3 2 1 7 7 C 1.40052 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99677 * 187.14179 * 7 2 1 9 9 C 1.46369 * 120.00430 * 7.14550 * 7 2 1 10 10 O 1.21693 * 119.99873 * 7.06066 * 9 7 2 11 11 N 1.34776 * 120.00241 * 187.06980 * 9 7 2 12 12 C 1.46503 * 120.00087 * 175.00373 * 11 9 7 13 13 H 1.08996 * 109.47328 * 34.10594 * 12 11 9 14 14 C 1.53007 * 109.46569 * 274.10678 * 12 11 9 15 15 C 1.50700 * 109.46798 * 173.41157 * 14 12 11 16 16 O 1.20827 * 120.00130 * 353.28621 * 15 14 12 17 17 O 1.34230 * 119.99667 * 173.28643 * 15 14 12 18 18 C 1.50695 * 109.47470 * 154.11052 * 12 11 9 19 19 C 1.38247 * 119.97598 * 219.99846 * 18 12 11 20 20 C 1.38191 * 120.02551 * 179.97438 * 19 18 12 21 21 C 1.38457 * 119.97817 * 0.02562 * 20 19 18 22 22 F 1.35101 * 120.02811 * 179.97438 * 21 20 19 23 23 C 1.38461 * 119.94835 * 0.24607 * 21 20 19 24 24 C 1.38195 * 119.97234 * 359.47456 * 23 21 20 25 25 H 0.97000 * 119.99979 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00151 * 354.98860 * 11 9 7 27 27 H 1.09004 * 109.47216 * 293.40917 * 14 12 11 28 28 H 1.08992 * 109.47386 * 53.40664 * 14 12 11 29 29 H 0.96701 * 116.99697 * 179.97438 * 17 15 14 30 30 H 1.07998 * 119.98287 * 0.02562 * 19 18 12 31 31 H 1.08003 * 120.01101 * 180.02562 * 20 19 18 32 32 H 1.08000 * 120.01316 * 179.74798 * 23 21 20 33 33 H 1.08001 * 119.98933 * 180.29652 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.3829 2.1072 -1.3947 5 1 1.4948 2.6199 0.8028 6 1 3.5870 1.4119 0.5920 7 6 2.0069 -1.2129 -0.0005 8 1 3.0806 -1.2166 0.1157 9 6 1.2836 -2.4755 -0.1588 10 8 0.0946 -2.4673 -0.4179 11 7 1.9343 -3.6473 -0.0173 12 6 1.1908 -4.9087 -0.0668 13 1 0.3625 -4.8149 -0.7690 14 6 0.6452 -5.2340 1.3251 15 6 -0.2524 -6.4417 1.2432 16 8 -0.5341 -6.9132 0.1669 17 8 -0.7389 -6.9937 2.3658 18 6 2.1087 -6.0155 -0.5178 19 6 1.6480 -6.9816 -1.3928 20 6 2.4890 -7.9967 -1.8074 21 6 3.7934 -8.0464 -1.3457 22 9 4.6163 -9.0386 -1.7500 23 6 4.2521 -7.0815 -0.4650 24 6 3.4110 -6.0640 -0.0562 25 1 -0.4850 0.8400 0.0004 26 1 2.8949 -3.6555 0.1171 27 1 1.4746 -5.4429 2.0008 28 1 0.0764 -4.3833 1.7004 29 1 -1.3106 -7.7668 2.2628 30 1 0.6306 -6.9424 -1.7531 31 1 2.1289 -8.7511 -2.4913 32 1 5.2682 -7.1216 -0.1011 33 1 3.7700 -5.3085 0.6270 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601060769.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:15 Heat of formation + Delta-G solvation = -154.988763 kcal Electronic energy + Delta-G solvation = -21550.763353 eV Core-core repulsion = 17876.674743 eV Total energy + Delta-G solvation = -3674.088610 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.84455 -40.34392 -39.05980 -37.32982 -35.98189 -34.32554 -32.49952 -31.11834 -30.54357 -29.45228 -26.47507 -24.26166 -23.00491 -21.88504 -20.64112 -19.34382 -17.96194 -17.89990 -17.31717 -16.57532 -16.00514 -15.82689 -15.53285 -15.37164 -15.12827 -14.35260 -14.03076 -13.77939 -13.46925 -13.35114 -12.95074 -12.73392 -12.56860 -12.32719 -12.05212 -11.43347 -11.34200 -11.25693 -11.03739 -10.94421 -10.67139 -10.52741 -10.32350 -10.25473 -8.99464 -8.92267 -8.49181 -7.80247 -7.69597 -6.30867 -4.72437 1.20777 1.34579 2.43506 3.09920 3.17107 3.19637 3.22794 3.67071 4.05540 4.32189 4.48244 4.68785 4.82565 4.91239 4.94453 5.20355 5.40950 5.48217 5.53240 5.63339 5.82817 5.95112 6.02172 6.14453 6.21168 6.32153 6.38162 6.64473 6.76685 6.99470 7.36108 7.77219 7.91640 8.08180 8.22736 8.94396 9.37137 10.48567 10.65936 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.004977 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.830771 B = 5624.501362 C = 6746.663926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.090 3.910 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.069 0.931 9 C 0.556 3.444 10 O -0.578 6.578 11 N -0.757 5.757 12 C 0.206 3.794 13 H 0.101 0.899 14 C -0.122 4.122 15 C 0.484 3.516 16 O -0.514 6.514 17 O -0.521 6.521 18 C -0.095 4.095 19 C -0.057 4.057 20 C -0.160 4.160 21 C 0.089 3.911 22 F -0.146 7.146 23 C -0.158 4.158 24 C -0.084 4.084 25 H 0.270 0.730 26 H 0.383 0.617 27 H 0.099 0.901 28 H 0.120 0.880 29 H 0.404 0.596 30 H 0.143 0.857 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.069 -12.964 2.686 14.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.130 4.130 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.088 0.912 9 C 0.361 3.639 10 O -0.461 6.461 11 N -0.413 5.413 12 C 0.099 3.901 13 H 0.119 0.881 14 C -0.161 4.161 15 C 0.327 3.673 16 O -0.402 6.402 17 O -0.333 6.333 18 C -0.096 4.096 19 C -0.075 4.075 20 C -0.178 4.178 21 C 0.070 3.930 22 F -0.125 7.125 23 C -0.177 4.177 24 C -0.103 4.103 25 H 0.081 0.919 26 H 0.216 0.784 27 H 0.118 0.882 28 H 0.138 0.862 29 H 0.262 0.738 30 H 0.161 0.839 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.217 -12.634 2.239 13.506 hybrid contribution 0.696 0.041 -0.011 0.697 sum 4.913 -12.593 2.228 13.700 Atomic orbital electron populations 1.69972 1.07142 1.27582 1.34859 1.25680 0.94587 1.00327 0.92431 0.86351 0.80214 0.81384 0.78780 1.19749 1.20454 1.18859 1.20856 0.94378 0.89409 1.53537 0.91237 1.18280 0.86853 0.82205 0.76594 1.90614 1.16173 1.86582 1.52723 1.46322 1.09936 1.04108 1.80909 1.19106 0.94271 0.83050 0.93714 0.88092 1.21965 0.98609 0.94010 1.01510 1.23609 0.78355 0.84201 0.81166 1.90650 1.57298 1.62378 1.29844 1.84577 1.63230 1.47352 1.38094 1.20233 0.94728 0.96971 0.97662 1.21123 0.99849 0.92035 0.94527 1.21136 0.92420 1.01219 1.03060 1.17746 0.88856 0.87883 0.98561 1.91468 1.71936 1.59702 1.89387 1.21043 1.01188 0.95586 0.99857 1.20897 0.92898 0.97239 0.99219 0.91927 0.78419 0.88230 0.86241 0.73814 0.83949 0.85064 0.84955 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.08 11.92 55.55 0.66 -21.42 16 2 C 0.09 2.40 5.48 -17.37 -0.10 2.31 16 3 Si 0.91 19.41 29.56 -169.99 -5.03 14.38 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 7 C -0.55 -14.55 9.54 -35.63 -0.34 -14.89 16 8 H 0.07 1.69 7.86 -52.49 -0.41 1.28 16 9 C 0.56 14.74 7.69 -12.99 -0.10 14.64 16 10 O -0.58 -17.63 14.74 5.20 0.08 -17.55 16 11 N -0.76 -15.41 5.01 -56.34 -0.28 -15.70 16 12 C 0.21 3.70 2.02 -69.08 -0.14 3.56 16 13 H 0.10 2.15 7.00 -51.93 -0.36 1.79 16 14 C -0.12 -1.94 5.56 -27.88 -0.15 -2.09 16 15 C 0.48 7.25 8.01 36.01 0.29 7.54 16 16 O -0.51 -8.54 13.62 -18.75 -0.26 -8.80 16 17 O -0.52 -6.25 13.42 -39.26 -0.53 -6.78 16 18 C -0.10 -1.46 4.51 -104.62 -0.47 -1.93 16 19 C -0.06 -0.85 8.15 -39.60 -0.32 -1.17 16 20 C -0.16 -2.14 10.03 -39.52 -0.40 -2.54 16 21 C 0.09 1.19 7.30 -39.42 -0.29 0.90 16 22 F -0.15 -1.97 17.27 2.25 0.04 -1.93 16 23 C -0.16 -1.98 10.03 -39.52 -0.40 -2.37 16 24 C -0.08 -1.12 9.04 -39.59 -0.36 -1.48 16 25 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 26 H 0.38 6.77 6.85 -40.82 -0.28 6.49 16 27 H 0.10 1.34 8.12 -51.93 -0.42 0.92 16 28 H 0.12 2.16 8.14 -51.93 -0.42 1.74 16 29 H 0.40 2.99 9.10 45.56 0.41 3.40 16 30 H 0.14 2.18 6.86 -52.49 -0.36 1.82 16 31 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 32 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.13 1.56 6.90 -52.49 -0.36 1.20 16 LS Contribution 299.45 15.07 4.51 4.51 Total: -1.00 -33.50 299.45 -5.76 -39.26 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -2.19 Total: 11.53 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -2.77 Total: 2.48 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.38 Total: -37.11 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.71 Total: -33.13 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.50 -5.76 -39.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601060769.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.724 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds