Wall clock time and date at job start Tue Mar 31 2020 05:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86799 * 120.00747 * 2 1 4 4 H 1.48502 * 109.47156 * 274.98640 * 3 2 1 5 5 H 1.48505 * 109.46689 * 34.98328 * 3 2 1 6 6 H 1.48495 * 109.47358 * 154.97886 * 3 2 1 7 7 C 1.40049 * 119.99414 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99684 * 186.14954 * 7 2 1 9 9 C 1.46377 * 120.00337 * 6.15078 * 7 2 1 10 10 O 1.21680 * 119.99582 * 353.93978 * 9 7 2 11 11 N 1.34771 * 120.00163 * 173.94242 * 9 7 2 12 12 C 1.46499 * 120.00110 * 180.02562 * 11 9 7 13 13 H 1.09002 * 109.46897 * 324.99111 * 12 11 9 14 14 C 1.53006 * 109.46952 * 204.99928 * 12 11 9 15 15 C 1.50692 * 109.47213 * 64.99482 * 14 12 11 16 16 C 1.38245 * 119.97558 * 269.72147 * 15 14 12 17 17 C 1.38201 * 120.02580 * 179.72770 * 16 15 14 18 18 C 1.38454 * 119.97456 * 0.57073 * 17 16 15 19 19 F 1.35102 * 120.02857 * 179.67942 * 18 17 16 20 20 C 1.38463 * 119.94788 * 359.70758 * 18 17 16 21 21 C 1.38194 * 119.97334 * 359.97438 * 20 18 17 22 22 C 1.50692 * 109.47645 * 84.99529 * 12 11 9 23 23 O 1.20831 * 120.00026 * 359.97438 * 22 12 11 24 24 O 1.34229 * 120.00272 * 179.72654 * 22 12 11 25 25 H 0.97009 * 119.99531 * 0.02562 * 1 2 3 26 26 H 0.97008 * 120.00197 * 359.97438 * 11 9 7 27 27 H 1.09001 * 109.46652 * 184.99627 * 14 12 11 28 28 H 1.09001 * 109.46747 * 304.99333 * 14 12 11 29 29 H 1.07997 * 119.98342 * 359.97438 * 16 15 14 30 30 H 1.08001 * 120.01339 * 180.25761 * 17 16 15 31 31 H 1.07999 * 120.01402 * 179.97438 * 20 18 17 32 32 H 1.08005 * 119.98878 * 179.97438 * 21 20 18 33 33 H 0.96697 * 117.00191 * 180.27303 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 2.3831 2.1071 -1.3948 5 1 1.4950 2.6199 0.8028 6 1 3.5870 1.4118 0.5921 7 6 2.0068 -1.2129 0.0005 8 1 3.0822 -1.2156 0.1007 9 6 1.2812 -2.4770 -0.1347 10 8 0.0644 -2.4827 -0.1367 11 7 1.9608 -3.6344 -0.2570 12 6 1.2345 -4.8994 -0.3929 13 1 0.3225 -4.8605 0.2027 14 6 2.1162 -6.0490 0.0990 15 6 2.3694 -5.8913 1.5761 16 6 3.4669 -5.1750 2.0162 17 6 3.6970 -5.0250 3.3706 18 6 2.8345 -5.6023 4.2869 19 9 3.0620 -5.4617 5.6112 20 6 1.7388 -6.3243 3.8450 21 6 1.5071 -6.4675 2.4902 22 6 0.8800 -5.1222 -1.8405 23 8 1.2006 -4.3075 -2.6733 24 8 0.2124 -6.2280 -2.2055 25 1 -0.4850 0.8402 -0.0004 26 1 2.9308 -3.6297 -0.2558 27 1 1.6117 -6.9977 -0.0839 28 1 3.0657 -6.0333 -0.4361 29 1 4.1425 -4.7292 1.3012 30 1 4.5522 -4.4618 3.7141 31 1 1.0655 -6.7755 4.5588 32 1 0.6527 -7.0310 2.1452 33 1 0.0110 -6.3289 -3.1459 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061262.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:42 Heat of formation + Delta-G solvation = -155.390718 kcal Electronic energy + Delta-G solvation = -21642.230611 eV Core-core repulsion = 17968.124571 eV Total energy + Delta-G solvation = -3674.106040 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.79213 -40.05000 -38.99896 -37.27128 -35.56078 -34.49266 -32.49990 -31.37439 -31.02015 -28.70561 -26.10688 -24.58111 -22.99548 -21.56289 -20.98037 -19.55475 -17.65911 -17.58444 -17.35992 -16.38828 -16.25299 -15.58052 -15.46617 -15.31064 -14.93922 -14.56255 -14.07180 -13.96144 -13.49787 -13.28848 -13.03994 -12.59554 -12.34147 -12.13994 -11.79069 -11.54832 -11.33516 -11.13693 -11.03990 -10.95796 -10.88514 -10.48732 -10.24473 -10.03030 -9.00937 -8.86836 -8.44816 -7.84142 -7.67778 -6.22687 -4.66223 1.20856 1.33687 2.74388 3.13880 3.20656 3.24038 3.37785 3.70177 4.08444 4.35526 4.51271 4.62124 4.75618 4.87275 4.96878 5.15460 5.25664 5.35008 5.54090 5.71023 5.75433 5.89339 5.97695 6.10857 6.15110 6.20113 6.31891 6.59990 6.90598 6.97612 7.41550 7.72927 7.90704 8.25586 8.41068 9.00098 9.38957 10.54099 10.72288 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.012051 B = 0.006630 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.826852 B = 4222.026204 C = 5976.983829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.560 3.440 10 O -0.577 6.577 11 N -0.738 5.738 12 C 0.174 3.826 13 H 0.117 0.883 14 C -0.080 4.080 15 C -0.082 4.082 16 C -0.072 4.072 17 C -0.149 4.149 18 C 0.091 3.909 19 F -0.145 7.145 20 C -0.154 4.154 21 C -0.085 4.085 22 C 0.457 3.543 23 O -0.496 6.496 24 O -0.527 6.527 25 H 0.269 0.731 26 H 0.385 0.615 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.002 -13.802 3.434 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.366 3.634 10 O -0.459 6.459 11 N -0.393 5.393 12 C 0.065 3.935 13 H 0.134 0.866 14 C -0.118 4.118 15 C -0.083 4.083 16 C -0.090 4.090 17 C -0.168 4.168 18 C 0.071 3.929 19 F -0.124 7.124 20 C -0.172 4.172 21 C -0.103 4.103 22 C 0.296 3.704 23 O -0.381 6.381 24 O -0.339 6.339 25 H 0.079 0.921 26 H 0.218 0.782 27 H 0.113 0.887 28 H 0.099 0.901 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 5.110 -13.380 3.683 14.789 hybrid contribution 0.706 0.928 -0.516 1.275 sum 5.816 -12.452 3.167 14.104 Atomic orbital electron populations 1.70020 1.07102 1.27344 1.34920 1.25697 0.94622 1.00338 0.92567 0.86346 0.80221 0.81422 0.78714 1.19772 1.20439 1.18821 1.20796 0.94066 0.89229 1.53477 0.91288 1.18239 0.87147 0.82142 0.75906 1.90601 1.14095 1.85858 1.55391 1.46112 1.08586 1.04357 1.80278 1.20016 0.98771 0.87167 0.87595 0.86595 1.20810 1.00793 0.98257 0.91938 1.19703 0.95314 0.98169 0.95075 1.20908 0.97070 0.96318 0.94720 1.21108 1.00638 1.01815 0.93199 1.17724 0.97037 1.00716 0.77373 1.91476 1.94496 1.94378 1.32007 1.21064 0.97624 1.01609 0.96935 1.20898 0.98710 0.98936 0.91719 1.24847 0.73973 0.77791 0.93778 1.90711 1.50281 1.43922 1.53161 1.84561 1.71002 1.44448 1.33854 0.92069 0.78223 0.88695 0.90067 0.84965 0.84826 0.84987 0.84910 0.74338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.08 11.85 55.55 0.66 -22.42 16 2 C 0.09 2.46 5.49 -17.37 -0.10 2.37 16 3 Si 0.91 20.33 29.56 -169.99 -5.03 15.30 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.54 -15.14 9.53 -35.63 -0.34 -15.48 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.56 15.66 7.57 -12.99 -0.10 15.56 16 10 O -0.58 -18.43 14.71 5.21 0.08 -18.35 16 11 N -0.74 -15.72 4.06 -56.35 -0.23 -15.95 16 12 C 0.17 3.11 2.47 -69.08 -0.17 2.94 16 13 H 0.12 2.29 7.58 -51.93 -0.39 1.90 16 14 C -0.08 -1.00 4.85 -27.88 -0.14 -1.13 16 15 C -0.08 -1.07 4.95 -104.62 -0.52 -1.58 16 16 C -0.07 -0.93 9.10 -39.59 -0.36 -1.29 16 17 C -0.15 -1.95 10.03 -39.52 -0.40 -2.35 16 18 C 0.09 1.24 7.30 -39.42 -0.29 0.95 16 19 F -0.14 -2.04 17.27 2.25 0.04 -2.01 16 20 C -0.15 -1.92 10.03 -39.51 -0.40 -2.32 16 21 C -0.08 -1.03 9.70 -39.59 -0.38 -1.42 16 22 C 0.46 8.47 7.66 36.00 0.28 8.74 16 23 O -0.50 -11.31 17.08 -18.75 -0.32 -11.63 16 24 O -0.53 -7.32 13.22 -39.25 -0.52 -7.83 16 25 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 26 H 0.39 7.17 7.83 -40.82 -0.32 6.85 16 27 H 0.09 0.98 7.93 -51.93 -0.41 0.56 16 28 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 29 H 0.13 1.51 7.59 -52.49 -0.40 1.11 16 30 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 33 H 0.40 3.89 9.10 45.56 0.41 4.31 16 LS Contribution 306.20 15.07 4.61 4.61 Total: -1.00 -37.39 306.20 -5.95 -43.35 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -2.34 Total: 9.94 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -2.91 Total: 4.99 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.43 Total: -38.37 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -0.76 Total: -37.82 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -37.39 -5.95 -43.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061262.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.042 kcal (2) G-P(sol) polarization free energy of solvation -37.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds