Wall clock time and date at job start Tue Mar 31 2020 05:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86799 * 120.00747 * 2 1 4 4 H 1.48502 * 109.47156 * 274.98640 * 3 2 1 5 5 H 1.48505 * 109.46689 * 34.98328 * 3 2 1 6 6 H 1.48495 * 109.47358 * 154.97886 * 3 2 1 7 7 C 1.40049 * 119.99414 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99684 * 186.14954 * 7 2 1 9 9 C 1.46377 * 120.00337 * 6.15078 * 7 2 1 10 10 O 1.21680 * 119.99582 * 353.93978 * 9 7 2 11 11 N 1.34771 * 120.00163 * 173.94242 * 9 7 2 12 12 C 1.46499 * 120.00110 * 180.02562 * 11 9 7 13 13 H 1.09002 * 109.46897 * 324.99111 * 12 11 9 14 14 C 1.53006 * 109.46952 * 204.99928 * 12 11 9 15 15 C 1.50692 * 109.47213 * 64.99482 * 14 12 11 16 16 C 1.38245 * 119.97558 * 269.72147 * 15 14 12 17 17 C 1.38201 * 120.02580 * 179.72770 * 16 15 14 18 18 C 1.38454 * 119.97456 * 0.57073 * 17 16 15 19 19 F 1.35102 * 120.02857 * 179.67942 * 18 17 16 20 20 C 1.38463 * 119.94788 * 359.70758 * 18 17 16 21 21 C 1.38194 * 119.97334 * 359.97438 * 20 18 17 22 22 C 1.50692 * 109.47645 * 84.99529 * 12 11 9 23 23 O 1.20831 * 120.00026 * 359.97438 * 22 12 11 24 24 O 1.34229 * 120.00272 * 179.72654 * 22 12 11 25 25 H 0.97009 * 119.99531 * 0.02562 * 1 2 3 26 26 H 0.97008 * 120.00197 * 359.97438 * 11 9 7 27 27 H 1.09001 * 109.46652 * 184.99627 * 14 12 11 28 28 H 1.09001 * 109.46747 * 304.99333 * 14 12 11 29 29 H 1.07997 * 119.98342 * 359.97438 * 16 15 14 30 30 H 1.08001 * 120.01339 * 180.25761 * 17 16 15 31 31 H 1.07999 * 120.01402 * 179.97438 * 20 18 17 32 32 H 1.08005 * 119.98878 * 179.97438 * 21 20 18 33 33 H 0.96697 * 117.00191 * 180.27303 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 2.3831 2.1071 -1.3948 5 1 1.4950 2.6199 0.8028 6 1 3.5870 1.4118 0.5921 7 6 2.0068 -1.2129 0.0005 8 1 3.0822 -1.2156 0.1007 9 6 1.2812 -2.4770 -0.1347 10 8 0.0644 -2.4827 -0.1367 11 7 1.9608 -3.6344 -0.2570 12 6 1.2345 -4.8994 -0.3929 13 1 0.3225 -4.8605 0.2027 14 6 2.1162 -6.0490 0.0990 15 6 2.3694 -5.8913 1.5761 16 6 3.4669 -5.1750 2.0162 17 6 3.6970 -5.0250 3.3706 18 6 2.8345 -5.6023 4.2869 19 9 3.0620 -5.4617 5.6112 20 6 1.7388 -6.3243 3.8450 21 6 1.5071 -6.4675 2.4902 22 6 0.8800 -5.1222 -1.8405 23 8 1.2006 -4.3075 -2.6733 24 8 0.2124 -6.2280 -2.2055 25 1 -0.4850 0.8402 -0.0004 26 1 2.9308 -3.6297 -0.2558 27 1 1.6117 -6.9977 -0.0839 28 1 3.0657 -6.0333 -0.4361 29 1 4.1425 -4.7292 1.3012 30 1 4.5522 -4.4618 3.7141 31 1 1.0655 -6.7755 4.5588 32 1 0.6527 -7.0310 2.1452 33 1 0.0110 -6.3289 -3.1459 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601061262.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:41 Heat of formation + Delta-G solvation = -182.673057 kcal Electronic energy + Delta-G solvation = -21643.413662 eV Core-core repulsion = 17968.124571 eV Total energy + Delta-G solvation = -3675.289091 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.85503 -41.48491 -40.08303 -39.13555 -37.00168 -36.05505 -34.58398 -32.86212 -32.00528 -30.14727 -28.04974 -25.83622 -23.98199 -23.02393 -22.24139 -21.29459 -19.35662 -18.98208 -18.59536 -17.82829 -17.54695 -17.24514 -16.69632 -16.54825 -16.38929 -15.97470 -15.87254 -14.98030 -14.55960 -14.49401 -14.44531 -14.29414 -14.00473 -13.59374 -13.18934 -12.82269 -12.78453 -12.62570 -12.58699 -12.54029 -12.36383 -12.01189 -11.84422 -11.57696 -10.93480 -9.98625 -9.91840 -9.67447 -9.46165 -8.30961 -6.84277 0.18302 0.36855 1.27854 1.39004 1.40111 1.55562 2.01287 2.24867 2.52840 2.68537 3.00485 3.35811 3.66982 3.78660 3.83732 3.94251 4.03758 4.19543 4.40416 4.43498 4.56452 4.75773 4.89201 5.05824 5.13622 5.22776 5.32744 5.33374 5.60510 5.64562 5.86266 6.00116 6.08098 6.23129 6.87400 7.07325 7.47061 8.46995 8.66205 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.012051 B = 0.006630 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.826852 B = 4222.026204 C = 5976.983829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.029 3.971 3 Si 0.993 3.007 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.245 1.245 7 C -0.569 4.569 8 H 0.089 0.911 9 C 0.549 3.451 10 O -0.628 6.628 11 N -0.726 5.726 12 C 0.170 3.830 13 H 0.096 0.904 14 C -0.064 4.064 15 C -0.094 4.094 16 C -0.082 4.082 17 C -0.160 4.160 18 C 0.071 3.929 19 F -0.152 7.152 20 C -0.159 4.159 21 C -0.088 4.088 22 C 0.465 3.535 23 O -0.546 6.546 24 O -0.506 6.506 25 H 0.273 0.727 26 H 0.399 0.601 27 H 0.125 0.875 28 H 0.101 0.899 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.157 0.843 33 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.334 -14.574 3.274 16.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.186 4.186 3 Si 0.813 3.187 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.168 1.168 7 C -0.605 4.605 8 H 0.107 0.893 9 C 0.354 3.646 10 O -0.515 6.515 11 N -0.381 5.381 12 C 0.061 3.939 13 H 0.113 0.887 14 C -0.102 4.102 15 C -0.094 4.094 16 C -0.100 4.100 17 C -0.179 4.179 18 C 0.052 3.948 19 F -0.130 7.130 20 C -0.178 4.178 21 C -0.105 4.105 22 C 0.306 3.694 23 O -0.436 6.436 24 O -0.318 6.318 25 H 0.083 0.917 26 H 0.234 0.766 27 H 0.143 0.857 28 H 0.119 0.881 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.168 0.832 32 H 0.174 0.826 33 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 6.478 -14.240 3.519 16.035 hybrid contribution 0.242 1.006 -0.476 1.139 sum 6.719 -13.234 3.043 15.150 Atomic orbital electron populations 1.70184 1.09483 1.28819 1.36534 1.26934 0.95495 1.04903 0.91284 0.85070 0.79196 0.75459 0.78988 1.19207 1.19757 1.16791 1.21390 0.95249 0.90161 1.53746 0.89322 1.18491 0.86695 0.84042 0.75407 1.90553 1.16209 1.87154 1.57584 1.45615 1.09189 1.04320 1.78935 1.20232 0.98859 0.87348 0.87426 0.88654 1.20791 1.00906 0.96907 0.91563 1.19862 0.95585 0.98509 0.95442 1.21158 0.97550 0.96347 0.94941 1.21327 1.01107 1.02010 0.93418 1.18020 0.97926 1.01615 0.77269 1.91454 1.94614 1.94519 1.32459 1.21347 0.97500 1.01260 0.97661 1.21233 0.99107 0.98692 0.91507 1.24777 0.73286 0.77869 0.93481 1.90703 1.52590 1.45804 1.54468 1.84481 1.69463 1.41950 1.35924 0.91689 0.76597 0.85651 0.88069 0.83680 0.83718 0.83197 0.82584 0.71728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.79 11.85 21.84 0.26 -50.54 16 2 C 0.03 1.63 5.49 85.31 0.47 2.10 16 3 Si 0.99 41.58 29.56 68.60 2.03 43.61 16 4 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.24 -9.38 7.11 99.48 0.71 -8.68 16 7 C -0.57 -32.16 9.53 24.83 0.24 -31.92 16 8 H 0.09 4.46 7.85 -2.91 -0.02 4.44 16 9 C 0.55 31.21 7.57 86.36 0.65 31.87 16 10 O -0.63 -41.47 14.71 -4.29 -0.06 -41.53 16 11 N -0.73 -30.74 4.06 -450.41 -1.83 -32.57 16 12 C 0.17 5.91 2.47 44.24 0.11 6.02 16 13 H 0.10 3.77 7.58 -2.39 -0.02 3.75 16 14 C -0.06 -1.42 4.85 29.85 0.14 -1.28 16 15 C -0.09 -2.24 4.95 -19.86 -0.10 -2.33 16 16 C -0.08 -2.00 9.10 22.26 0.20 -1.80 16 17 C -0.16 -4.06 10.03 22.31 0.22 -3.83 16 18 C 0.07 1.89 7.30 22.38 0.16 2.05 16 19 F -0.15 -4.23 17.27 44.97 0.78 -3.45 16 20 C -0.16 -3.76 10.03 22.31 0.22 -3.54 16 21 C -0.09 -1.97 9.70 22.26 0.22 -1.75 16 22 C 0.46 16.67 7.66 71.23 0.55 17.22 16 23 O -0.55 -24.87 17.08 21.95 0.37 -24.49 16 24 O -0.51 -12.74 13.22 -51.41 -0.68 -13.42 16 25 H 0.27 15.37 8.29 -92.70 -0.77 14.60 16 26 H 0.40 14.47 7.83 -92.70 -0.73 13.74 16 27 H 0.13 2.07 7.93 -2.39 -0.02 2.05 16 28 H 0.10 1.88 8.08 -2.39 -0.02 1.87 16 29 H 0.15 3.04 7.59 -2.91 -0.02 3.01 16 30 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 31 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 32 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.42 7.07 9.10 -74.06 -0.67 6.39 16 Total: -1.00 -83.95 306.20 3.74 -80.21 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -0.22 Total: 29.38 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 3.09 Total: 12.80 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -1.57 Total: -83.11 kcal Atomic # 8 Polarization: -79.08 SS G_CDS: -0.37 Total: -79.45 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.78 Total: -3.45 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -83.95 3.74 -80.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061262.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.461 kcal (2) G-P(sol) polarization free energy of solvation -83.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds