Wall clock time and date at job start Tue Mar 31 2020 05:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99835 * 2 1 4 4 H 1.48491 * 109.47115 * 269.99586 * 3 2 1 5 5 H 1.48509 * 109.46780 * 29.99770 * 3 2 1 6 6 H 1.48497 * 109.46888 * 149.99527 * 3 2 1 7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21543 * 120.00296 * 359.72071 * 12 11 10 14 14 C 1.47900 * 119.99883 * 179.72369 * 12 11 10 15 15 C 1.39639 * 120.01556 * 359.72669 * 14 12 11 16 16 C 1.37709 * 120.03924 * 179.71941 * 15 14 12 17 17 C 1.39683 * 120.06500 * 0.55081 * 16 15 14 18 18 C 1.47938 * 119.98225 * 179.74269 * 17 16 15 19 19 O 1.21434 * 120.00169 * 179.97438 * 18 17 16 20 20 O 1.34688 * 119.99940 * 359.97438 * 18 17 16 21 21 C 1.39459 * 120.03328 * 359.72481 * 17 16 15 22 22 C 1.38194 * 119.96627 * 359.97438 * 21 17 16 23 23 F 1.35096 * 120.03908 * 179.97438 * 22 21 17 24 24 H 0.96999 * 120.00239 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 26 26 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 27 27 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 28 28 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 29 29 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 30 30 H 1.08008 * 119.98107 * 359.97438 * 15 14 12 31 31 H 1.07993 * 119.96792 * 180.27435 * 16 15 14 32 32 H 0.96700 * 117.00137 * 180.02562 * 20 18 17 33 33 H 1.08000 * 120.01747 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0055 13 8 3.4024 -6.0979 0.0059 14 6 1.4476 -7.3788 0.0110 15 6 0.0512 -7.3793 0.0163 16 6 -0.6378 -8.5716 0.0156 17 6 0.0588 -9.7823 0.0213 18 6 -0.6832 -11.0622 0.0263 19 8 -0.0780 -12.1149 0.0308 20 8 -2.0301 -11.0597 0.0259 21 6 1.4534 -9.7853 0.0219 22 6 2.1462 -8.5895 0.0163 23 9 3.4971 -8.5906 0.0174 24 1 -0.4850 0.8400 -0.0004 25 1 0.6249 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8904 27 1 2.8722 -3.6042 0.8906 28 1 2.8722 -3.6042 -0.8894 29 1 0.5430 -4.9308 0.0000 30 1 -0.4888 -6.4439 0.0167 31 1 -1.7177 -8.5706 0.0152 32 1 -2.4707 -11.9205 0.0297 33 1 1.9917 -10.7215 0.0259 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065288.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:43 Heat of formation + Delta-G solvation = -153.439935 kcal Electronic energy + Delta-G solvation = -20510.882867 eV Core-core repulsion = 16836.861419 eV Total energy + Delta-G solvation = -3674.021448 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.01634 -40.88091 -39.80010 -38.21135 -36.56606 -35.04369 -33.06485 -32.09047 -31.05187 -29.59127 -26.20077 -24.67647 -23.03889 -22.29229 -21.15991 -20.48867 -18.85366 -18.21256 -17.55180 -16.66075 -16.36383 -16.21379 -16.16289 -15.77757 -15.22157 -14.87185 -14.73131 -14.50760 -14.27411 -13.52493 -13.33783 -13.25023 -12.75545 -12.58746 -12.35086 -11.99901 -11.87895 -11.27940 -11.15631 -11.08423 -10.69020 -10.42202 -9.98756 -9.66477 -9.59613 -9.30666 -9.19661 -8.65639 -8.43633 -6.14357 -4.17350 -0.14863 0.72099 1.83555 2.40908 2.82219 3.26834 3.29163 3.33742 3.39312 3.48466 3.87191 4.19873 4.36064 4.42855 4.52454 4.69382 4.78964 5.14601 5.23090 5.49167 5.57509 5.65090 5.65835 5.97254 6.19797 6.25371 6.27969 6.62953 6.72577 7.38240 7.43172 7.53386 7.78057 7.83818 8.20045 8.40743 8.88319 9.47950 10.97204 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.032156 B = 0.003051 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.556588 B = 9175.523034 C =10025.619369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.710 5.710 12 C 0.542 3.458 13 O -0.526 6.526 14 C -0.127 4.127 15 C -0.072 4.072 16 C -0.079 4.079 17 C -0.084 4.084 18 C 0.531 3.469 19 O -0.507 6.507 20 O -0.507 6.507 21 C -0.102 4.102 22 C 0.148 3.852 23 F -0.107 7.107 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.024 0.976 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.398 0.602 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.418 0.582 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.047 -20.533 0.050 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.361 5.361 12 C 0.327 3.673 13 O -0.404 6.404 14 C -0.131 4.131 15 C -0.091 4.091 16 C -0.097 4.097 17 C -0.086 4.086 18 C 0.374 3.626 19 O -0.396 6.396 20 O -0.319 6.319 21 C -0.121 4.121 22 C 0.127 3.873 23 F -0.085 7.085 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.233 0.767 30 H 0.168 0.832 31 H 0.170 0.830 32 H 0.277 0.723 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.894 -20.267 0.052 20.850 hybrid contribution -0.183 0.354 -0.007 0.399 sum -5.077 -19.912 0.045 20.550 Atomic orbital electron populations 1.69945 1.06090 1.26961 1.50274 1.24989 0.94903 0.99438 0.94893 0.86504 0.79853 0.82927 0.78237 1.20529 1.21141 1.19705 1.21034 0.93291 0.90298 1.51525 0.92179 1.19339 0.94183 0.91046 0.97944 1.21837 0.96167 0.80889 1.01236 1.46268 1.10592 1.06333 1.72888 1.18013 0.87389 0.83495 0.78445 1.90835 1.12901 1.87305 1.49350 1.20638 0.94702 0.93803 1.03964 1.21343 0.91881 0.99482 0.96356 1.21453 1.01437 0.90374 0.96415 1.18865 0.92247 0.91243 1.06212 1.20718 0.80629 0.89019 0.72221 1.90912 1.69633 1.33393 1.45632 1.84537 1.20578 1.41235 1.85591 1.21154 0.93047 0.98196 0.99692 1.17397 0.78066 0.92355 0.99496 1.91640 1.27007 1.97069 1.92759 0.92790 0.95832 0.95818 0.92120 0.92120 0.76745 0.83193 0.82958 0.72261 0.82601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C 0.12 2.45 5.61 -4.04 -0.02 2.43 16 11 N -0.71 -11.70 5.51 -61.23 -0.34 -12.04 16 12 C 0.54 9.12 7.77 -12.30 -0.10 9.03 16 13 O -0.53 -10.94 15.32 5.33 0.08 -10.85 16 14 C -0.13 -1.64 5.88 -104.84 -0.62 -2.26 16 15 C -0.07 -0.67 9.52 -39.25 -0.37 -1.05 16 16 C -0.08 -0.62 9.60 -39.24 -0.38 -1.00 16 17 C -0.08 -0.77 5.87 -104.93 -0.62 -1.39 16 18 C 0.53 4.62 8.28 34.70 0.29 4.90 16 19 O -0.51 -5.81 17.12 -19.21 -0.33 -6.14 16 20 O -0.51 -2.80 12.67 -40.46 -0.51 -3.31 16 21 C -0.10 -1.06 9.56 -39.14 -0.37 -1.44 16 22 C 0.15 1.90 7.27 -39.02 -0.28 1.62 16 23 F -0.11 -1.64 15.53 2.25 0.03 -1.61 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.40 5.35 6.49 -40.82 -0.27 5.09 16 30 H 0.15 1.10 6.39 -52.48 -0.34 0.76 16 31 H 0.15 0.84 7.59 -52.49 -0.40 0.44 16 32 H 0.42 0.47 9.11 45.56 0.42 0.89 16 33 H 0.16 1.49 7.63 -52.49 -0.40 1.09 16 LS Contribution 305.15 15.07 4.60 4.60 Total: -1.00 -33.94 305.15 -5.99 -39.93 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -2.22 Total: 0.07 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -3.03 Total: -1.89 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.40 Total: -36.76 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.76 Total: -20.30 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.03 Total: -1.61 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.94 -5.99 -39.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065288.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.513 kcal (2) G-P(sol) polarization free energy of solvation -33.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds