Wall clock time and date at job start Tue Mar 31 2020 05:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00147 * 2 1 4 4 H 1.48498 * 109.47132 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46806 * 299.99821 * 3 2 1 6 6 H 1.48499 * 109.47248 * 59.99710 * 3 2 1 7 7 C 1.37878 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99923 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99888 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46918 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.46967 * 179.97438 * 10 9 7 12 12 C 1.38980 * 120.00279 * 180.02562 * 11 10 9 13 13 N 1.32059 * 119.63183 * 354.42839 * 12 11 10 14 14 C 1.32880 * 121.53173 * 180.02562 * 13 12 11 15 15 C 1.48051 * 119.68205 * 180.02562 * 14 13 12 16 16 O 1.21437 * 119.99675 * 180.02562 * 15 14 13 17 17 O 1.34680 * 120.00405 * 0.02562 * 15 14 13 18 18 C 1.39176 * 120.63227 * 0.27847 * 14 13 12 19 19 C 1.38792 * 119.21945 * 359.45816 * 18 14 13 20 20 C 1.38287 * 118.58731 * 0.52370 * 19 18 14 21 21 N 1.48018 * 120.35437 * 179.71117 * 20 19 18 22 22 O 1.21802 * 119.99676 * 5.86691 * 21 20 19 23 23 O 1.21796 * 120.00386 * 185.86486 * 21 20 19 24 24 H 0.96996 * 120.00070 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47367 * 59.99657 * 9 7 2 26 26 H 1.08997 * 109.46547 * 299.99613 * 9 7 2 27 27 H 1.09002 * 109.47001 * 60.00036 * 10 9 7 28 28 H 1.08997 * 109.46958 * 299.99615 * 10 9 7 29 29 H 0.97006 * 120.00046 * 359.97438 * 11 10 9 30 30 H 0.96697 * 117.00401 * 179.97438 * 17 15 14 31 31 H 1.07994 * 120.38972 * 179.69827 * 18 14 13 32 32 H 1.08004 * 120.70544 * 180.26570 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.2077 -6.1344 0.0018 13 7 3.5236 -6.1287 -0.1096 14 6 4.2255 -7.2570 -0.1138 15 6 5.6996 -7.2029 -0.2403 16 8 6.3467 -8.2305 -0.2452 17 8 6.3230 -6.0141 -0.3499 18 6 3.5878 -8.4893 -0.0056 19 6 2.2060 -8.5285 0.1187 20 6 1.5076 -7.3350 0.1195 21 7 0.0326 -7.3315 0.2433 22 8 -0.5634 -8.3730 0.4523 23 8 -0.5851 -6.2873 0.1364 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5566 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8895 29 1 0.5428 -4.9308 0.0019 30 1 7.2865 -6.0293 -0.4298 31 1 4.1617 -9.4041 -0.0143 32 1 1.6869 -9.4713 0.2085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065588.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:17 Heat of formation + Delta-G solvation = -47.797785 kcal Electronic energy + Delta-G solvation = -21202.724019 eV Core-core repulsion = 17553.203520 eV Total energy + Delta-G solvation = -3649.520499 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.36892 -41.05853 -39.84382 -37.04378 -36.50631 -35.95965 -33.44588 -33.33010 -31.45915 -29.07386 -27.66214 -25.23571 -24.25579 -23.01733 -22.26079 -20.96999 -19.41715 -19.11247 -18.52779 -18.11450 -17.63272 -16.96975 -16.34296 -16.20169 -16.03969 -14.93993 -14.62404 -14.36786 -14.25598 -13.81901 -13.62709 -13.47104 -12.33813 -11.92409 -11.68612 -11.41378 -11.40434 -11.38130 -11.22123 -11.14453 -10.92451 -10.72779 -10.66615 -10.17437 -10.08139 -9.71960 -9.34477 -8.50200 -8.08789 -6.13311 -4.17635 -0.60561 0.74187 0.97715 1.28537 1.99377 2.35905 2.98105 3.24033 3.25257 3.33174 3.37090 3.79637 4.08687 4.35453 4.38320 4.52655 4.78291 5.17697 5.23552 5.31294 5.62629 5.98451 6.03083 6.13141 6.25981 6.56652 6.79658 6.94467 7.45973 7.48071 7.51711 7.57259 7.82314 7.89037 8.20842 8.87959 9.47494 10.98154 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014579 B = 0.004844 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.159301 B = 5779.319148 C = 7674.325678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.010 3.990 10 C 0.116 3.884 11 N -0.665 5.665 12 C 0.459 3.541 13 N -0.480 5.480 14 C 0.203 3.797 15 C 0.545 3.455 16 O -0.495 6.495 17 O -0.482 6.482 18 C -0.196 4.196 19 C 0.038 3.962 20 C -0.163 4.163 21 N 0.053 4.947 22 O -0.157 6.157 23 O -0.184 6.184 24 H 0.263 0.737 25 H 0.026 0.974 26 H 0.025 0.975 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.428 0.572 30 H 0.417 0.583 31 H 0.166 0.834 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.440 -16.955 -0.271 18.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.079 0.921 9 C -0.027 4.027 10 C -0.006 4.006 11 N -0.300 5.300 12 C 0.212 3.788 13 N -0.202 5.202 14 C 0.058 3.942 15 C 0.386 3.614 16 O -0.382 6.382 17 O -0.292 6.292 18 C -0.221 4.221 19 C 0.011 3.989 20 C -0.258 4.258 21 N 0.563 4.437 22 O -0.373 6.373 23 O -0.385 6.385 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.279 0.721 30 H 0.276 0.724 31 H 0.184 0.816 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 9.065 -15.917 -0.376 18.322 hybrid contribution -0.093 0.206 0.049 0.231 sum 8.973 -15.711 -0.327 18.096 Atomic orbital electron populations 1.69969 1.06100 1.26917 1.49845 1.25004 0.94887 0.99450 0.94888 0.86446 0.80063 0.83296 0.77678 1.19590 1.20897 1.20900 1.21003 0.93193 0.90064 1.51930 0.92079 1.19365 0.94177 0.90784 0.98408 1.22086 0.96391 0.80476 1.01645 1.46865 1.11942 1.03076 1.68141 1.18132 0.87698 0.85734 0.87190 1.67708 1.04310 1.29045 1.19129 1.20149 0.91122 0.89414 0.93494 1.20290 0.87265 0.81384 0.72503 1.90935 1.66216 1.35416 1.45661 1.84737 1.28316 1.32605 1.83516 1.21632 0.93240 0.98766 1.08478 1.21198 0.93418 0.97141 0.87107 1.21678 0.80559 0.96691 1.26850 1.43236 1.02732 1.00364 0.97326 1.94507 1.69663 1.21461 1.51657 1.94279 1.67127 1.20754 1.56318 0.92754 0.95590 0.95620 0.91661 0.91306 0.72124 0.72370 0.81640 0.81231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.11 9.11 -34.44 -0.31 -14.42 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 9 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 10 C 0.12 2.31 5.63 -4.04 -0.02 2.29 16 11 N -0.66 -11.82 5.59 -60.42 -0.34 -12.16 16 12 C 0.46 7.18 7.47 -155.20 -1.16 6.02 16 13 N -0.48 -7.14 9.33 -9.01 -0.08 -7.22 16 14 C 0.20 2.44 6.74 -83.04 -0.56 1.88 16 15 C 0.54 5.98 8.32 34.76 0.29 6.27 16 16 O -0.50 -5.83 17.10 -19.22 -0.33 -6.16 16 17 O -0.48 -4.65 13.24 -40.44 -0.54 -5.19 16 18 C -0.20 -1.86 9.63 -39.03 -0.38 -2.24 16 19 C 0.04 0.38 9.66 -39.36 -0.38 0.00 16 20 C -0.16 -2.23 6.89 -79.47 -0.55 -2.78 16 21 N 0.05 0.81 4.45 34.20 0.15 0.97 16 22 O -0.16 -2.30 18.52 -29.46 -0.55 -2.84 16 23 O -0.18 -3.16 15.73 -29.46 -0.46 -3.62 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.43 7.75 4.90 -41.19 -0.20 7.55 16 30 H 0.42 1.74 9.11 45.56 0.42 2.15 16 31 H 0.17 1.17 7.63 -52.49 -0.40 0.77 16 32 H 0.17 1.18 7.69 -52.48 -0.40 0.78 16 LS Contribution 300.06 15.07 4.52 4.52 Total: -1.00 -31.66 300.06 -7.04 -38.69 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -1.82 Total: 3.53 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -3.31 Total: -1.31 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.47 Total: -43.55 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -1.87 Total: -17.82 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.66 -7.04 -38.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065588.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.103 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds