Wall clock time and date at job start Tue Mar 31 2020 05:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86809 * 119.99952 * 2 1 4 4 H 1.48501 * 109.46897 * 270.00091 * 3 2 1 5 5 H 1.48496 * 109.46881 * 29.99864 * 3 2 1 6 6 H 1.48497 * 109.46829 * 150.00385 * 3 2 1 7 7 C 1.39051 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00353 * 198.62162 * 7 2 1 9 9 N 1.36870 * 119.99493 * 18.61308 * 7 2 1 10 10 C 1.46498 * 120.00085 * 39.34773 * 9 7 2 11 11 C 1.52998 * 109.47420 * 95.72049 * 10 9 7 12 12 C 1.50694 * 109.47330 * 179.97438 * 11 10 9 13 13 O 1.20828 * 120.00104 * 0.02562 * 12 11 10 14 14 O 1.34238 * 120.00190 * 179.97438 * 12 11 10 15 15 C 1.34776 * 120.00037 * 219.34284 * 9 7 2 16 16 O 1.21591 * 119.99921 * 184.61289 * 15 9 7 17 17 C 1.47728 * 119.99885 * 4.60569 * 15 9 7 18 18 C 1.39663 * 120.14062 * 22.69645 * 17 15 9 19 19 C 1.37922 * 119.90256 * 179.72193 * 18 17 15 20 20 C 1.38369 * 120.17815 * 0.57735 * 19 18 17 21 21 C 1.38569 * 120.27535 * 359.70104 * 20 19 18 22 22 F 1.35104 * 119.94369 * 180.02562 * 21 20 19 23 23 C 1.38187 * 120.10127 * 359.97438 * 21 20 19 24 24 H 0.96994 * 119.99662 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47075 * 335.72227 * 10 9 7 26 26 H 1.08999 * 109.47042 * 215.71909 * 10 9 7 27 27 H 1.08999 * 109.46898 * 299.99948 * 11 10 9 28 28 H 1.08996 * 109.47561 * 59.99826 * 11 10 9 29 29 H 0.96698 * 116.99907 * 179.97438 * 14 12 11 30 30 H 1.07999 * 120.05287 * 0.02562 * 18 17 15 31 31 H 1.07999 * 119.91520 * 180.28055 * 19 18 17 32 32 H 1.07990 * 119.86063 * 179.71827 * 20 19 18 33 33 H 1.08007 * 120.09124 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 2.4951 2.0465 -1.4001 5 1 1.4451 2.6527 0.7000 6 1 3.5452 1.4402 0.7000 7 6 2.0090 -1.2042 -0.0005 8 1 3.0465 -1.2288 0.2981 9 7 1.3783 -2.3583 -0.3794 10 6 0.4357 -2.3438 -1.5007 11 6 1.1586 -2.7689 -2.7804 12 6 0.1888 -2.7546 -3.9337 13 8 -0.9624 -2.4365 -3.7511 14 8 0.6042 -3.0942 -5.1642 15 6 1.6245 -3.5082 0.2791 16 8 1.1298 -4.5489 -0.1090 17 6 2.4956 -3.5041 1.4722 18 6 2.6819 -2.3271 2.2005 19 6 3.4917 -2.3302 3.3170 20 6 4.1294 -3.4934 3.7104 21 6 3.9544 -4.6641 2.9899 22 9 4.5800 -5.7961 3.3804 23 6 3.1404 -4.6756 1.8734 24 1 -0.4849 0.8400 0.0004 25 1 0.0361 -1.3375 -1.6265 26 1 -0.3811 -3.0364 -1.2977 27 1 1.9754 -2.0763 -2.9834 28 1 1.5583 -3.7752 -2.6548 29 1 -0.0543 -3.0703 -5.8719 30 1 2.1887 -1.4169 1.8928 31 1 3.6323 -1.4212 3.8829 32 1 4.7659 -3.4890 4.5828 33 1 3.0038 -5.5882 1.3122 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071844.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:26 Heat of formation + Delta-G solvation = -137.478779 kcal Electronic energy + Delta-G solvation = -21747.355261 eV Core-core repulsion = 18074.025941 eV Total energy + Delta-G solvation = -3673.329320 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.51433 -39.93014 -39.33895 -37.42082 -35.84521 -35.18711 -32.21674 -31.34380 -30.40904 -29.48590 -25.51803 -24.72535 -22.56936 -22.01149 -20.61324 -19.48772 -18.15458 -17.70268 -16.59586 -16.15922 -15.86121 -15.70014 -15.55697 -15.26067 -15.10916 -14.40935 -14.31064 -13.84552 -13.40013 -13.01680 -12.85804 -12.62697 -12.45835 -12.07318 -11.68553 -11.58031 -11.25565 -11.19176 -11.15007 -10.83293 -10.71732 -10.51573 -10.23859 -10.15348 -9.26394 -8.76565 -8.57398 -8.17075 -7.76811 -6.62203 -4.32573 1.38474 1.71367 2.61888 2.98260 3.09028 3.10678 3.35097 3.61442 3.91013 4.35453 4.43148 4.77853 4.81599 5.24752 5.32857 5.52864 5.70317 5.77647 5.81307 5.89955 5.98351 6.25473 6.29204 6.49063 6.55689 6.74931 6.79088 6.92126 7.03769 7.14424 7.23863 7.42588 7.63626 8.11243 8.25675 8.78520 9.20996 9.64384 10.38247 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014372 B = 0.006536 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.739763 B = 4283.132082 C = 5819.424527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.045 3.955 3 Si 0.913 3.087 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.353 4.353 8 H 0.101 0.899 9 N -0.425 5.425 10 C 0.131 3.869 11 C -0.127 4.127 12 C 0.484 3.516 13 O -0.514 6.514 14 O -0.524 6.524 15 C 0.507 3.493 16 O -0.596 6.596 17 C -0.073 4.073 18 C -0.088 4.088 19 C -0.117 4.117 20 C -0.148 4.148 21 C 0.069 3.931 22 F -0.149 7.149 23 C -0.114 4.114 24 H 0.277 0.723 25 H 0.114 0.886 26 H 0.066 0.934 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.402 0.598 30 H 0.184 0.816 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.634 -0.397 -0.239 5.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.164 4.164 3 Si 0.738 3.262 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.480 4.480 8 H 0.118 0.882 9 N -0.142 5.142 10 C 0.008 3.992 11 C -0.166 4.166 12 C 0.326 3.674 13 O -0.402 6.402 14 O -0.336 6.336 15 C 0.297 3.703 16 O -0.482 6.482 17 C -0.076 4.076 18 C -0.106 4.106 19 C -0.135 4.135 20 C -0.167 4.167 21 C 0.050 3.950 22 F -0.128 7.128 23 C -0.134 4.134 24 H 0.087 0.913 25 H 0.132 0.868 26 H 0.085 0.915 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.259 0.741 30 H 0.200 0.800 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.180 -0.696 -0.067 5.227 hybrid contribution 0.138 0.654 -0.410 0.784 sum 5.319 -0.042 -0.477 5.340 Atomic orbital electron populations 1.69889 1.06268 1.28636 1.42863 1.25499 0.95233 0.99992 0.95674 0.86144 0.79827 0.81178 0.79047 1.19903 1.20580 1.18778 1.19570 0.95859 0.84438 1.48112 0.88156 1.43231 1.38504 1.07093 1.25366 1.21172 0.90882 1.04870 0.82320 1.21866 0.98218 1.05293 0.91240 1.23747 0.88564 0.71944 0.83155 1.90707 1.20599 1.44330 1.84576 1.84590 1.47531 1.81837 1.19612 1.18261 0.83959 0.84616 0.83445 1.90641 1.55918 1.32253 1.69437 1.19874 0.97726 0.92962 0.96997 1.23009 0.94977 1.00706 0.91860 1.21091 0.98037 0.97186 0.97212 1.21179 1.02585 0.92261 1.00708 1.17477 0.97957 0.82617 0.96918 1.91447 1.80993 1.49625 1.90731 1.21184 0.96529 0.99673 0.95978 0.91287 0.86823 0.91537 0.87740 0.88056 0.74075 0.79982 0.85336 0.85613 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.35 11.50 55.50 0.64 -19.71 16 2 C 0.05 1.01 4.79 -17.45 -0.08 0.92 16 3 Si 0.91 17.32 29.59 -169.99 -5.03 12.28 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 7 C -0.35 -7.85 5.92 -15.00 -0.09 -7.94 16 8 H 0.10 2.14 6.34 -52.49 -0.33 1.81 16 9 N -0.43 -9.85 2.52 -115.93 -0.29 -10.14 16 10 C 0.13 2.97 4.12 -4.04 -0.02 2.96 16 11 C -0.13 -2.40 6.09 -27.89 -0.17 -2.57 16 12 C 0.48 8.58 8.33 36.00 0.30 8.88 16 13 O -0.51 -10.64 16.74 -18.75 -0.31 -10.96 16 14 O -0.52 -7.25 13.42 -39.28 -0.53 -7.78 16 15 C 0.51 11.92 7.44 -12.38 -0.09 11.83 16 16 O -0.60 -15.22 16.19 5.29 0.09 -15.14 16 17 C -0.07 -1.50 5.64 -104.98 -0.59 -2.09 16 18 C -0.09 -1.65 7.86 -39.17 -0.31 -1.95 16 19 C -0.12 -1.82 10.03 -39.65 -0.40 -2.22 16 20 C -0.15 -2.24 10.02 -39.41 -0.39 -2.63 16 21 C 0.07 1.18 7.29 -39.48 -0.29 0.89 16 22 F -0.15 -2.47 17.26 2.25 0.04 -2.43 16 23 C -0.11 -2.16 9.57 -39.09 -0.37 -2.53 16 24 H 0.28 6.34 8.31 -40.82 -0.34 6.01 16 25 H 0.11 2.76 5.59 -51.93 -0.29 2.47 16 26 H 0.07 1.63 7.63 -51.93 -0.40 1.23 16 27 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 28 H 0.10 1.91 8.04 -51.93 -0.42 1.50 16 29 H 0.40 3.62 9.10 45.56 0.41 4.03 16 30 H 0.18 3.68 4.79 -52.49 -0.25 3.43 16 31 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 32 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.14 2.56 7.82 -52.48 -0.41 2.15 16 LS Contribution 297.52 15.07 4.48 4.48 Total: -1.00 -28.27 297.52 -5.51 -33.77 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -2.09 Total: 12.08 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -2.51 Total: 3.54 kcal Atomic # 7 Polarization: -30.20 SS G_CDS: 0.35 Total: -29.86 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.76 Total: -33.88 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.27 -5.51 -33.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071844.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.705 kcal (2) G-P(sol) polarization free energy of solvation -28.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds