Wall clock time and date at job start Tue Mar 31 2020 05:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.35184 * 123.13662 * 325.64352 * 3 2 1 5 5 S 1.70935 * 108.84024 * 179.97438 * 4 3 2 6 6 C 1.70775 * 91.12839 * 0.28399 * 5 4 3 7 7 C 1.50694 * 124.72887 * 179.86950 * 6 5 4 8 8 N 1.46500 * 109.47011 * 269.95938 * 7 6 5 9 9 C 1.36940 * 119.99894 * 269.99476 * 8 7 6 10 10 H 1.08001 * 119.99678 * 142.08559 * 9 8 7 11 11 C 1.38807 * 120.00494 * 322.09380 * 9 8 7 12 12 N 1.31620 * 120.00427 * 156.99740 * 11 9 8 13 13 Si 1.86803 * 119.99443 * 336.99351 * 11 9 8 14 14 H 1.48503 * 109.47171 * 95.70465 * 13 11 9 15 15 H 1.48506 * 109.46930 * 215.70132 * 13 11 9 16 16 H 1.48500 * 109.47313 * 335.70308 * 13 11 9 17 17 C 1.46504 * 119.99976 * 90.00166 * 8 7 6 18 18 C 1.53000 * 109.47061 * 89.77619 * 17 8 7 19 19 C 1.50700 * 109.46558 * 179.97438 * 18 17 8 20 20 O 1.20826 * 120.00537 * 0.02562 * 19 18 17 21 21 O 1.34228 * 119.99918 * 179.97438 * 19 18 17 22 22 N 1.28716 * 110.54339 * 359.82901 * 6 5 4 23 23 H 1.08005 * 125.57563 * 0.03395 * 4 3 2 24 24 H 1.09000 * 109.46980 * 29.95662 * 7 6 5 25 25 H 1.08998 * 109.47174 * 149.95544 * 7 6 5 26 26 H 0.97002 * 119.99634 * 179.97438 * 12 11 9 27 27 H 1.09003 * 109.46817 * 209.77382 * 17 8 7 28 28 H 1.08992 * 109.47083 * 329.76903 * 17 8 7 29 29 H 1.08993 * 109.47081 * 299.99557 * 18 17 8 30 30 H 1.08995 * 109.47490 * 60.00154 * 18 17 8 31 31 H 0.96698 * 117.00611 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3073 -0.9335 0.6388 5 16 4.9636 -0.5847 0.4000 6 6 4.5739 0.7924 -0.5316 7 6 5.5839 1.7194 -1.1574 8 7 5.9092 2.7940 -0.2163 9 6 5.1812 3.9538 -0.2231 10 1 4.9463 4.4494 0.7073 11 6 4.7448 4.4925 -1.4257 12 7 3.7078 5.3027 -1.4462 13 14 5.6296 4.0673 -3.0150 14 1 4.9272 2.9450 -3.6876 15 1 5.6379 5.2529 -3.9093 16 1 7.0268 3.6661 -2.7117 17 6 7.0136 2.6279 0.7320 18 6 8.3111 3.1321 0.0970 19 6 9.4469 2.9617 1.0728 20 8 9.2399 2.4855 2.1638 21 8 10.6888 3.3381 0.7295 22 7 3.2974 0.9278 -0.6255 23 1 2.9156 -1.7648 1.2063 24 1 6.4887 1.1615 -1.3986 25 1 5.1676 2.1483 -2.0689 26 1 3.4032 5.6794 -2.2866 27 1 6.8052 3.2000 1.6361 28 1 7.1190 1.5732 0.9857 29 1 8.5194 2.5600 -0.8070 30 1 8.2057 4.1869 -0.1566 31 1 11.3846 3.2090 1.3883 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072980.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:47 Heat of formation + Delta-G solvation = 10.813127 kcal Electronic energy + Delta-G solvation = -19113.415997 eV Core-core repulsion = 15909.189929 eV Total energy + Delta-G solvation = -3204.226068 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.02038 -39.63966 -36.75697 -36.09147 -35.79745 -32.24831 -31.68271 -29.92079 -27.23418 -25.17453 -25.01037 -22.05760 -20.95921 -19.79386 -18.86511 -17.92585 -17.08549 -16.77408 -16.31476 -15.87233 -15.51280 -14.79918 -14.46265 -14.00692 -13.66845 -13.33062 -13.17383 -12.97221 -12.78845 -12.62430 -12.35598 -12.22431 -11.81720 -11.49327 -11.38396 -11.32687 -10.82701 -10.44655 -10.33174 -10.30145 -9.82550 -9.39055 -9.29412 -8.71213 -8.58582 -7.26751 -6.17244 -3.62730 0.72536 1.52288 1.89450 2.32837 2.42933 2.77527 3.18941 3.27502 3.31340 3.36687 3.74899 3.99293 4.34624 4.72715 4.86443 5.16505 5.27096 5.37329 5.41168 5.47195 5.66548 5.83389 5.98256 6.14620 6.20947 6.31642 6.54933 6.70044 7.57638 7.76199 7.98054 8.06778 8.19500 8.68977 9.47068 9.77239 10.96483 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.014406 B = 0.006751 C = 0.005069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.229696 B = 4146.682143 C = 5522.788380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C 0.299 3.701 3 C 0.126 3.874 4 C -0.259 4.259 5 S 0.184 5.816 6 C 0.058 3.942 7 C 0.193 3.807 8 N -0.577 5.577 9 C -0.283 4.283 10 H 0.083 0.917 11 C 0.054 3.946 12 N -0.874 5.874 13 Si 0.864 3.136 14 H -0.279 1.279 15 H -0.295 1.295 16 H -0.262 1.262 17 C 0.159 3.841 18 C -0.137 4.137 19 C 0.481 3.519 20 O -0.522 6.522 21 O -0.523 6.523 22 N -0.424 5.424 23 H 0.180 0.820 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.268 0.732 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.849 -10.735 1.986 15.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.087 5.087 2 C -0.019 4.019 3 C -0.011 4.011 4 C -0.404 4.404 5 S 0.442 5.558 6 C -0.226 4.226 7 C 0.063 3.937 8 N -0.297 5.297 9 C -0.412 4.412 10 H 0.101 0.899 11 C -0.150 4.150 12 N -0.512 5.512 13 Si 0.692 3.308 14 H -0.206 1.206 15 H -0.223 1.223 16 H -0.186 1.186 17 C 0.032 3.968 18 C -0.178 4.178 19 C 0.324 3.676 20 O -0.411 6.411 21 O -0.335 6.335 22 N -0.138 5.138 23 H 0.198 0.802 24 H 0.090 0.910 25 H 0.108 0.892 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.131 0.869 31 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 9.341 -10.638 1.897 14.284 hybrid contribution 0.117 -0.096 -0.436 0.462 sum 9.458 -10.735 1.460 14.381 Atomic orbital electron populations 1.81189 1.11338 1.07837 1.08375 1.24330 0.90921 0.93270 0.93367 1.15820 0.87616 0.94999 1.02629 1.26287 0.98947 1.06305 1.08905 1.82817 1.03442 1.22597 1.46900 1.29212 0.94934 0.97374 1.01034 1.20385 0.92039 0.87258 0.93977 1.44195 1.31724 1.12621 1.41139 1.18719 1.29439 0.99124 0.93910 0.89920 1.25427 0.95910 0.95792 0.97880 1.69877 1.21436 1.32684 1.27203 0.87126 0.81611 0.77352 0.84666 1.20611 1.22254 1.18604 1.20853 0.83996 0.99070 0.92840 1.22308 0.91200 1.06519 0.97744 1.24038 0.83054 0.72862 0.87660 1.90687 1.84326 1.41946 1.24139 1.84619 1.19568 1.78876 1.50401 1.66943 1.04495 1.22495 1.19868 0.80220 0.90953 0.89201 0.92232 0.91162 0.92928 0.88487 0.86920 0.74062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.73 18.54 41.84 0.78 -6.95 16 2 C 0.30 5.36 15.74 -22.48 -0.35 5.00 16 3 C 0.13 2.17 6.55 -86.29 -0.57 1.61 16 4 C -0.26 -3.42 10.89 29.65 0.32 -3.10 16 5 S 0.18 2.38 22.92 -107.50 -2.46 -0.08 16 6 C 0.06 1.03 6.93 -13.59 -0.09 0.94 16 7 C 0.19 3.59 5.08 -5.20 -0.03 3.57 16 8 N -0.58 -11.72 2.05 -174.61 -0.36 -12.08 16 9 C -0.28 -7.10 9.90 -15.06 -0.15 -7.25 16 10 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 11 C 0.05 1.43 5.29 -17.43 -0.09 1.34 16 12 N -0.87 -25.26 13.97 55.49 0.78 -24.49 16 13 Si 0.86 19.56 25.10 -169.99 -4.27 15.30 16 14 H -0.28 -6.26 6.68 56.52 0.38 -5.88 16 15 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 17 C 0.16 2.69 4.96 -4.04 -0.02 2.67 16 18 C -0.14 -2.03 6.14 -27.88 -0.17 -2.20 16 19 C 0.48 6.64 8.33 36.01 0.30 6.94 16 20 O -0.52 -8.47 16.74 -18.75 -0.31 -8.79 16 21 O -0.52 -5.78 13.42 -39.25 -0.53 -6.31 16 22 N -0.42 -8.61 10.67 -9.65 -0.10 -8.71 16 23 H 0.18 1.74 8.06 -52.48 -0.42 1.32 16 24 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 25 H 0.09 1.90 3.37 -51.93 -0.18 1.73 16 26 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.07 1.28 8.00 -51.93 -0.42 0.87 16 28 H 0.05 0.80 8.03 -51.93 -0.42 0.38 16 29 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.11 1.78 8.14 -51.93 -0.42 1.35 16 31 H 0.40 2.59 9.10 45.56 0.41 3.01 16 LS Contribution 301.39 15.07 4.54 4.54 Total: -1.00 -31.68 301.39 -4.65 -36.33 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -1.86 Total: 1.71 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -0.85 Total: 9.51 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 1.09 Total: -52.23 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.84 Total: -15.10 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.27 Total: 15.30 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.46 Total: -0.08 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.68 -4.65 -36.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072980.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.148 kcal (2) G-P(sol) polarization free energy of solvation -31.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds