Wall clock time and date at job start Tue Mar 31 2020 05:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86797 * 120.00512 * 2 1 4 4 H 1.48497 * 109.47349 * 274.66409 * 3 2 1 5 5 H 1.48507 * 109.46966 * 34.66316 * 3 2 1 6 6 H 1.48498 * 109.47165 * 154.66079 * 3 2 1 7 7 C 1.40235 * 119.99634 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00203 * 162.20840 * 7 2 1 9 9 C 1.41104 * 119.99801 * 342.20467 * 7 2 1 10 10 C 1.40892 * 120.09963 * 155.06852 * 9 7 2 11 11 C 1.36321 * 119.89148 * 180.02562 * 10 9 7 12 12 C 1.40015 * 120.10411 * 0.02562 * 11 10 9 13 13 C 1.47642 * 119.89229 * 179.97438 * 12 11 10 14 14 O 1.21582 * 120.00221 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99842 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99881 * 180.02562 * 15 13 12 17 17 H 1.08998 * 109.46725 * 324.71466 * 16 15 13 18 18 C 1.52995 * 109.47273 * 84.71963 * 16 15 13 19 19 F 1.39898 * 109.47039 * 299.99580 * 18 16 15 20 20 C 1.50703 * 109.46725 * 204.72098 * 16 15 13 21 21 O 1.20824 * 119.99880 * 359.97438 * 20 16 15 22 22 O 1.34230 * 119.99675 * 179.97438 * 20 16 15 23 23 C 1.40012 * 120.21220 * 0.23506 * 12 11 10 24 24 C 1.36319 * 120.10390 * 359.47783 * 23 12 11 25 25 H 0.97004 * 119.99724 * 359.97438 * 1 2 3 26 26 H 1.07990 * 120.05624 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.94957 * 179.97438 * 11 10 9 28 28 H 0.96998 * 120.00269 * 359.71202 * 15 13 12 29 29 H 1.08990 * 109.47329 * 60.00160 * 18 16 15 30 30 H 1.09001 * 109.46701 * 179.97438 * 18 16 15 31 31 H 0.96698 * 116.99815 * 179.97438 * 22 20 16 32 32 H 1.07999 * 119.94745 * 179.72417 * 23 12 11 33 33 H 1.08001 * 120.05504 * 180.25293 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 2.3895 2.1033 -1.3954 5 1 1.4908 2.6222 0.7963 6 1 3.5838 1.4135 0.5992 7 6 2.0075 -1.2145 -0.0005 8 1 3.0487 -1.2369 -0.2863 9 6 1.3525 -2.4074 0.3724 10 6 1.8228 -3.6489 -0.0993 11 6 1.1864 -4.7987 0.2633 12 6 0.0669 -4.7470 1.1025 13 6 -0.6191 -5.9951 1.4918 14 8 -0.2120 -7.0655 1.0833 15 7 -1.6973 -5.9479 2.2991 16 6 -2.3777 -7.1864 2.6858 17 1 -2.3498 -7.8909 1.8546 18 6 -1.6723 -7.7989 3.8975 19 9 -0.3418 -8.0807 3.5693 20 6 -3.8109 -6.8829 3.0393 21 8 -4.2216 -5.7484 2.9752 22 8 -4.6310 -7.8729 3.4252 23 6 -0.4075 -3.5152 1.5694 24 6 0.2258 -2.3606 1.2170 25 1 -0.4850 0.8401 0.0004 26 1 2.6860 -3.6897 -0.7469 27 1 1.5459 -5.7508 -0.0981 28 1 -2.0201 -5.0943 2.6278 29 1 -1.7001 -7.0944 4.7286 30 1 -2.1788 -8.7201 4.1854 31 1 -5.5414 -7.6294 3.6421 32 1 -1.2741 -3.4800 2.2129 33 1 -0.1384 -1.4112 1.5808 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076459.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:29 Heat of formation + Delta-G solvation = -162.834292 kcal Electronic energy + Delta-G solvation = -21267.221040 eV Core-core repulsion = 17592.792222 eV Total energy + Delta-G solvation = -3674.428818 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.49579 -40.72846 -39.01405 -37.17679 -36.48436 -34.62999 -33.88296 -31.04499 -29.54483 -29.37600 -25.94142 -24.80000 -22.49031 -21.24422 -20.79071 -19.90532 -18.31403 -17.79407 -17.51173 -16.70347 -16.19738 -16.01786 -15.45961 -15.22119 -15.12903 -14.51158 -14.02809 -13.89012 -13.53447 -13.22197 -12.92298 -12.69455 -12.09375 -12.04293 -11.92499 -11.60803 -11.40187 -11.26694 -11.08444 -10.97411 -10.88750 -10.64761 -10.07126 -9.56474 -9.35528 -9.07442 -8.89370 -7.72406 -7.55718 -7.04342 -4.61119 1.79942 2.19336 2.46059 2.89960 2.94678 3.00901 3.04155 3.52461 3.73196 3.80050 4.34100 4.58635 4.65351 4.75433 4.98238 5.20956 5.56560 5.58971 5.96310 6.06421 6.12026 6.31506 6.63376 6.77355 6.82131 7.02120 7.12276 7.42805 7.50324 7.61733 7.76550 7.85620 8.05799 8.10560 8.39330 8.62311 8.74580 8.95933 9.87659 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027533 B = 0.003958 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.706899 B = 7073.307488 C = 7758.376384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.441 4.441 8 H 0.085 0.915 9 C 0.130 3.870 10 C -0.239 4.239 11 C -0.019 4.019 12 C -0.284 4.284 13 C 0.578 3.422 14 O -0.558 6.558 15 N -0.731 5.731 16 C 0.126 3.874 17 H 0.134 0.866 18 C 0.062 3.938 19 F -0.191 7.191 20 C 0.481 3.519 21 O -0.497 6.497 22 O -0.511 6.511 23 C -0.061 4.061 24 C -0.178 4.178 25 H 0.287 0.713 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.409 0.591 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.415 0.585 32 H 0.090 0.910 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.375 -7.660 7.393 12.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.469 4.469 8 H 0.104 0.896 9 C 0.126 3.874 10 C -0.258 4.258 11 C -0.038 4.038 12 C -0.288 4.288 13 C 0.374 3.626 14 O -0.438 6.438 15 N -0.389 5.389 16 C 0.018 3.982 17 H 0.152 0.848 18 C 0.006 3.994 19 F -0.171 7.171 20 C 0.321 3.679 21 O -0.383 6.383 22 O -0.323 6.323 23 C -0.080 4.080 24 C -0.197 4.197 25 H 0.098 0.902 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.247 0.753 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.275 0.725 32 H 0.108 0.892 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.988 -8.045 6.956 12.726 hybrid contribution -0.646 1.400 0.231 1.559 sum -7.635 -6.645 7.187 12.413 Atomic orbital electron populations 1.69746 1.07948 1.30108 1.31508 1.26113 0.94805 1.01928 0.91875 0.86208 0.80855 0.79904 0.79395 1.19220 1.19725 1.18049 1.19866 0.98422 0.91186 1.37409 0.89644 1.17796 0.90317 0.92203 0.87055 1.20713 1.04668 0.92621 1.07836 1.20353 0.92741 0.97225 0.93483 1.18765 1.04612 0.90553 1.14887 1.18614 0.78065 0.90030 0.75864 1.90664 1.65712 1.31421 1.56034 1.45828 1.31994 1.07522 1.53513 1.20828 0.85127 0.91515 1.00751 0.84827 1.22215 0.79648 1.01603 0.95982 1.92895 1.35355 1.94945 1.93941 1.23180 0.88668 0.82855 0.73168 1.90771 1.76588 1.22836 1.48092 1.84501 1.27249 1.41530 1.79020 1.20496 0.97222 0.92597 0.97713 1.20970 0.99847 0.96914 1.01994 0.90185 0.88296 0.87970 0.75303 0.90406 0.89006 0.72546 0.89244 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.57 10.97 55.56 0.61 -17.96 16 2 C 0.07 1.74 5.13 -17.31 -0.09 1.65 16 3 Si 0.91 17.26 29.60 -169.99 -5.03 12.23 16 4 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 7 C -0.44 -10.99 9.04 -37.75 -0.34 -11.33 16 8 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16 9 C 0.13 3.31 5.57 -106.80 -0.60 2.72 16 10 C -0.24 -5.80 9.73 -39.27 -0.38 -6.18 16 11 C -0.02 -0.45 9.52 -39.61 -0.38 -0.82 16 12 C -0.28 -6.55 5.89 -104.73 -0.62 -7.16 16 13 C 0.58 12.26 7.29 -12.42 -0.09 12.17 16 14 O -0.56 -12.92 14.88 5.29 0.08 -12.84 16 15 N -0.73 -12.47 4.90 -55.94 -0.27 -12.74 16 16 C 0.13 1.69 2.96 -69.08 -0.20 1.48 16 17 H 0.13 1.85 7.58 -51.93 -0.39 1.46 16 18 C 0.06 0.73 7.12 37.16 0.26 0.99 16 19 F -0.19 -3.15 15.69 2.25 0.04 -3.11 16 20 C 0.48 5.49 7.69 36.01 0.28 5.77 16 21 O -0.50 -7.19 16.60 -18.75 -0.31 -7.50 16 22 O -0.51 -3.84 13.33 -39.26 -0.52 -4.36 16 23 C -0.06 -1.38 9.47 -39.61 -0.38 -1.76 16 24 C -0.18 -4.41 8.63 -39.27 -0.34 -4.75 16 25 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 26 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 27 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 28 H 0.41 6.75 5.79 -40.82 -0.24 6.52 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.77 8.11 -51.93 -0.42 0.35 16 31 H 0.41 1.30 9.10 45.56 0.41 1.72 16 32 H 0.09 1.77 6.37 -52.49 -0.33 1.44 16 33 H 0.12 3.01 6.17 -52.49 -0.32 2.68 16 LS Contribution 298.50 15.07 4.50 4.50 Total: -1.00 -31.03 298.50 -5.88 -36.91 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -2.09 Total: 12.09 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -2.87 Total: -7.22 kcal Atomic # 7 Polarization: -31.04 SS G_CDS: 0.34 Total: -30.70 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.76 Total: -24.70 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.04 Total: -3.11 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.03 -5.88 -36.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076459.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.923 kcal (2) G-P(sol) polarization free energy of solvation -31.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds