Wall clock time and date at job start Tue Mar 31 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86808 * 120.00004 * 2 1 4 4 H 1.48497 * 109.46940 * 239.99750 * 3 2 1 5 5 H 1.48502 * 109.47008 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46976 * 119.99957 * 3 2 1 7 7 C 1.40226 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00320 * 197.86200 * 7 2 1 9 9 C 1.41101 * 119.99916 * 17.86972 * 7 2 1 10 10 C 1.40898 * 120.10531 * 204.62710 * 9 7 2 11 11 C 1.36311 * 119.89152 * 180.02562 * 10 9 7 12 12 C 1.40013 * 120.11124 * 359.97438 * 11 10 9 13 13 C 1.47635 * 119.89776 * 179.97438 * 12 11 10 14 14 O 1.21594 * 120.00142 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00173 * 179.97438 * 13 12 11 16 16 C 1.46505 * 120.00306 * 179.97438 * 15 13 12 17 17 C 1.52995 * 109.47012 * 180.02562 * 16 15 13 18 18 H 1.09000 * 109.47338 * 60.00343 * 17 16 15 19 19 F 1.39897 * 109.46987 * 299.99840 * 17 16 15 20 20 C 1.50706 * 109.46862 * 180.02562 * 17 16 15 21 21 O 1.20829 * 119.99908 * 44.99576 * 20 17 16 22 22 O 1.34222 * 120.00158 * 224.99771 * 20 17 16 23 23 C 1.40020 * 120.20559 * 0.25855 * 12 11 10 24 24 C 1.36311 * 120.10732 * 359.47849 * 23 12 11 25 25 H 0.97008 * 120.00081 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.05080 * 359.97438 * 10 9 7 27 27 H 1.08002 * 119.94090 * 179.97438 * 11 10 9 28 28 H 0.97002 * 119.99906 * 0.02562 * 15 13 12 29 29 H 1.09004 * 109.46622 * 59.99732 * 16 15 13 30 30 H 1.09002 * 109.47138 * 300.00481 * 16 15 13 31 31 H 0.96698 * 117.00203 * 179.97438 * 22 20 17 32 32 H 1.07995 * 119.94169 * 179.74222 * 23 12 11 33 33 H 1.08000 * 120.05290 * 180.23273 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2754 2.7465 -0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0075 -1.2144 0.0005 8 1 3.0485 -1.2368 0.2874 9 6 1.3531 -2.4070 -0.3739 10 6 1.8267 -3.6494 0.0923 11 6 1.1915 -4.7989 -0.2726 12 6 0.0697 -4.7465 -1.1088 13 6 -0.6144 -5.9945 -1.5015 14 8 -0.2037 -7.0657 -1.0984 15 7 -1.6947 -5.9464 -2.3059 16 6 -2.3733 -7.1849 -2.6960 17 6 -3.5585 -6.8525 -3.6047 18 1 -3.1998 -6.3384 -4.4963 19 9 -4.4547 -6.0260 -2.9185 20 6 -4.2568 -8.1264 -4.0055 21 8 -4.4893 -8.9745 -3.1767 22 8 -4.6205 -8.3191 -5.2830 23 6 -0.4018 -3.5146 -1.5785 24 6 0.2236 -2.3594 -1.2148 25 1 -0.4851 0.8401 -0.0004 26 1 2.6922 -3.6909 0.7370 27 1 1.5541 -5.7517 0.0839 28 1 -2.0226 -5.0919 -2.6271 29 1 -2.7316 -7.6992 -1.8043 30 1 -1.6751 -7.8287 -3.2309 31 1 -5.0653 -9.1518 -5.4921 32 1 -1.2650 -3.4795 -2.2266 33 1 -0.1431 -1.4094 -1.5746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601076799.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:27 Heat of formation + Delta-G solvation = -163.712489 kcal Electronic energy + Delta-G solvation = -20716.665259 eV Core-core repulsion = 17042.198360 eV Total energy + Delta-G solvation = -3674.466899 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.33347 -40.57486 -39.14570 -37.19327 -36.66095 -34.72024 -33.91121 -31.17471 -29.81605 -29.46507 -26.32241 -24.73664 -22.00302 -21.56950 -20.90767 -19.86119 -18.82942 -17.58365 -17.57241 -17.35339 -16.86737 -15.88466 -15.59541 -15.17050 -14.84609 -14.53789 -14.36823 -14.03424 -13.73285 -13.25538 -13.00486 -12.76378 -12.44022 -12.14484 -12.04535 -11.95045 -11.58915 -11.38907 -11.28850 -11.01678 -10.92781 -10.67804 -10.10472 -9.59167 -9.38162 -9.09645 -8.82576 -7.75858 -7.58587 -7.06809 -4.63906 1.53616 2.17982 2.19400 2.90332 2.92734 2.96402 3.00919 3.64297 3.71158 3.79893 3.90051 4.26800 4.48101 4.56696 4.66892 5.42519 5.52938 5.58242 5.93463 5.97072 6.02038 6.28538 6.67920 6.74517 6.79342 6.99450 7.09492 7.30656 7.39659 7.59033 7.73522 7.82396 8.03152 8.09398 8.36213 8.59499 8.71695 8.94659 9.84960 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.031432 B = 0.003313 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.588371 B = 8449.120443 C = 9124.466705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.441 4.441 8 H 0.085 0.915 9 C 0.129 3.871 10 C -0.239 4.239 11 C -0.020 4.020 12 C -0.286 4.286 13 C 0.576 3.424 14 O -0.571 6.571 15 N -0.741 5.741 16 C 0.107 3.893 17 C 0.101 3.899 18 H 0.125 0.875 19 F -0.175 7.175 20 C 0.466 3.534 21 O -0.485 6.485 22 O -0.506 6.506 23 C -0.062 4.062 24 C -0.178 4.178 25 H 0.288 0.712 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.402 0.598 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.417 0.583 32 H 0.089 0.911 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.959 -5.731 -9.684 13.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.468 4.468 8 H 0.103 0.897 9 C 0.126 3.874 10 C -0.259 4.259 11 C -0.039 4.039 12 C -0.291 4.291 13 C 0.371 3.629 14 O -0.453 6.453 15 N -0.396 5.396 16 C -0.019 4.019 17 C 0.063 3.937 18 H 0.143 0.857 19 F -0.156 7.156 20 C 0.304 3.696 21 O -0.370 6.370 22 O -0.319 6.319 23 C -0.081 4.081 24 C -0.197 4.197 25 H 0.099 0.901 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.238 0.762 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.277 0.723 32 H 0.107 0.893 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.786 -6.192 -9.030 12.882 hybrid contribution -0.418 0.666 -0.249 0.825 sum -7.204 -5.526 -9.279 12.983 Atomic orbital electron populations 1.69732 1.07926 1.30257 1.31320 1.26111 0.94824 1.01926 0.91885 0.86248 0.80205 0.79383 0.80371 1.18451 1.20022 1.18637 1.19843 0.98448 0.91206 1.37349 0.89677 1.17793 0.90354 0.92169 0.87091 1.20716 1.04656 0.92611 1.07884 1.20354 0.92794 0.97201 0.93539 1.18805 1.04677 0.90723 1.14892 1.18596 0.78210 0.89874 0.76179 1.90657 1.66437 1.31695 1.56468 1.45746 1.32042 1.08049 1.53783 1.21565 0.91532 0.89550 0.99212 1.21335 0.87976 0.86806 0.97548 0.85713 1.92972 1.69507 1.71757 1.81343 1.23521 0.76728 0.88953 0.80424 1.90798 1.50034 1.44414 1.51769 1.84523 1.71897 1.46250 1.29187 1.20469 0.97300 0.92560 0.97761 1.20977 0.99905 0.96914 1.01943 0.90088 0.88320 0.88052 0.76233 0.89206 0.89431 0.72300 0.89275 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.13 10.95 55.56 0.61 -17.53 16 2 C 0.07 1.70 5.14 -17.31 -0.09 1.61 16 3 Si 0.91 16.95 29.60 -169.99 -5.03 11.92 16 4 H -0.26 -4.80 7.11 56.52 0.40 -4.39 16 5 H -0.28 -4.97 7.11 56.52 0.40 -4.57 16 6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.44 -10.78 9.04 -37.75 -0.34 -11.12 16 8 H 0.09 1.98 7.91 -52.49 -0.42 1.56 16 9 C 0.13 3.23 5.58 -106.80 -0.60 2.64 16 10 C -0.24 -5.70 9.73 -39.27 -0.38 -6.08 16 11 C -0.02 -0.46 9.52 -39.61 -0.38 -0.83 16 12 C -0.29 -6.42 5.89 -104.73 -0.62 -7.03 16 13 C 0.58 11.98 7.76 -12.42 -0.10 11.88 16 14 O -0.57 -13.38 16.32 5.28 0.09 -13.29 16 15 N -0.74 -11.88 5.43 -61.31 -0.33 -12.22 16 16 C 0.11 1.43 5.21 -4.04 -0.02 1.41 16 17 C 0.10 1.04 3.91 -27.88 -0.11 0.93 16 18 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 19 F -0.18 -2.17 16.93 2.25 0.04 -2.14 16 20 C 0.47 4.70 7.67 36.01 0.28 4.98 16 21 O -0.48 -6.49 17.27 -18.75 -0.32 -6.81 16 22 O -0.51 -3.44 13.42 -39.24 -0.53 -3.97 16 23 C -0.06 -1.33 9.47 -39.61 -0.38 -1.71 16 24 C -0.18 -4.27 8.63 -39.27 -0.34 -4.61 16 25 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 26 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 27 H 0.10 2.28 7.63 -52.49 -0.40 1.88 16 28 H 0.40 5.69 6.42 -40.82 -0.26 5.43 16 29 H 0.09 1.38 7.91 -51.93 -0.41 0.96 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.42 1.00 9.10 45.56 0.41 1.42 16 32 H 0.09 1.61 6.37 -52.49 -0.33 1.27 16 33 H 0.12 2.92 6.15 -52.49 -0.32 2.60 16 LS Contribution 302.93 15.07 4.57 4.57 Total: -1.00 -30.86 302.93 -6.12 -36.98 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -2.13 Total: 10.44 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -3.07 Total: -7.95 kcal Atomic # 7 Polarization: -30.02 SS G_CDS: 0.28 Total: -29.74 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.76 Total: -24.08 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.92 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.86 -6.12 -36.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601076799.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.732 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds