Wall clock time and date at job start Tue Mar 31 2020 05:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86795 * 119.99774 * 2 1 4 4 H 1.48497 * 109.47414 * 270.00066 * 3 2 1 5 5 H 1.48502 * 109.47307 * 30.00232 * 3 2 1 6 6 H 1.48501 * 109.47397 * 149.99844 * 3 2 1 7 7 C 1.39932 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00251 * 162.60169 * 7 2 1 9 9 C 1.41434 * 120.00064 * 342.60956 * 7 2 1 10 10 C 1.40787 * 120.17891 * 154.90965 * 9 7 2 11 11 C 1.37710 * 120.04215 * 180.02562 * 10 9 7 12 12 C 1.38378 * 120.41174 * 359.67873 * 11 10 9 13 13 C 1.39883 * 120.35510 * 0.60346 * 12 11 10 14 14 C 1.47882 * 120.02368 * 179.69862 * 13 12 11 15 15 O 1.21552 * 119.99796 * 179.72716 * 14 13 12 16 16 N 1.34769 * 120.00235 * 359.71593 * 14 13 12 17 17 C 1.46497 * 120.00319 * 180.02562 * 16 14 13 18 18 H 1.09007 * 109.47103 * 325.00337 * 17 16 14 19 19 C 1.52997 * 109.47323 * 85.00493 * 17 16 14 20 20 F 1.39905 * 109.46759 * 300.00067 * 19 17 16 21 21 C 1.50698 * 109.47560 * 205.00530 * 17 16 14 22 22 O 1.20825 * 119.99713 * 0.02562 * 21 17 16 23 23 O 1.34225 * 120.00337 * 179.72252 * 21 17 16 24 24 C 1.39038 * 119.94746 * 359.41927 * 13 12 11 25 25 H 0.96996 * 119.99841 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.98082 * 0.02562 * 10 9 7 27 27 H 1.07999 * 119.79821 * 180.02562 * 11 10 9 28 28 H 1.08000 * 119.82377 * 180.29616 * 12 11 10 29 29 H 0.96999 * 120.00237 * 0.02562 * 16 14 13 30 30 H 1.08994 * 109.47249 * 60.00161 * 19 17 16 31 31 H 1.08999 * 109.47350 * 180.02562 * 19 17 16 32 32 H 0.96700 * 117.00612 * 180.27336 * 23 21 17 33 33 H 1.08004 * 120.19971 * 180.25830 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4403 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0510 -1.2334 -0.2791 9 6 1.3494 -2.4085 0.3672 10 6 1.8189 -3.6485 -0.1063 11 6 1.1752 -4.8119 0.2520 12 6 0.0692 -4.7732 1.0828 13 6 -0.4153 -3.5501 1.5583 14 6 -1.6017 -3.5168 2.4404 15 8 -2.0194 -2.4541 2.8573 16 7 -2.2201 -4.6645 2.7819 17 6 -3.3957 -4.6315 3.6553 18 1 -3.2820 -3.8322 4.3876 19 6 -4.6487 -4.3784 2.8146 20 9 -4.5256 -3.1525 2.1516 21 6 -3.5284 -5.9519 4.3694 22 8 -2.7231 -6.8302 4.1697 23 8 -4.5376 -6.1500 5.2320 24 6 0.2230 -2.3663 1.2056 25 1 -0.4850 0.8400 -0.0004 26 1 2.6846 -3.6873 -0.7509 27 1 1.5390 -5.7610 -0.1131 28 1 -0.4255 -5.6918 1.3617 29 1 -1.8867 -5.5126 2.4494 30 1 -4.7625 -5.1776 2.0823 31 1 -5.5234 -4.3533 3.4644 32 1 -4.5789 -7.0116 5.6690 33 1 -0.1451 -1.4201 1.5738 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601077665.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:27 Heat of formation + Delta-G solvation = -158.434162 kcal Electronic energy + Delta-G solvation = -21519.421728 eV Core-core repulsion = 17845.183714 eV Total energy + Delta-G solvation = -3674.238014 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.47819 -40.78113 -39.12292 -37.08864 -36.52304 -34.70974 -33.72266 -31.07607 -29.52314 -29.28301 -25.34660 -24.89839 -23.01584 -21.22962 -20.81987 -19.89818 -18.40876 -18.02877 -17.08825 -16.66558 -16.22007 -15.81420 -15.27704 -15.16502 -15.06226 -14.69041 -14.39792 -13.80768 -13.60200 -13.20243 -12.94043 -12.65611 -12.49973 -12.01357 -11.69222 -11.61797 -11.14912 -11.09663 -11.06903 -10.93926 -10.74257 -10.49251 -10.05569 -9.69324 -9.20825 -9.13173 -8.96762 -7.64830 -7.51604 -6.78895 -4.40747 1.75357 2.15532 2.40959 2.81835 3.08918 3.11657 3.17169 3.42646 3.78110 3.93040 4.34071 4.62960 4.65023 4.73379 4.95814 5.17714 5.56955 5.60439 5.71921 6.06720 6.09371 6.28250 6.53407 6.70848 6.97585 7.00586 7.21113 7.37453 7.45902 7.66559 7.72793 7.89703 8.00504 8.17440 8.49951 8.78450 8.82300 8.85044 10.15964 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.024072 B = 0.004621 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.874249 B = 6057.605362 C = 6830.595250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.210 4.210 11 C -0.097 4.097 12 C -0.217 4.217 13 C -0.126 4.126 14 C 0.571 3.429 15 O -0.528 6.528 16 N -0.726 5.726 17 C 0.124 3.876 18 H 0.136 0.864 19 C 0.062 3.938 20 F -0.189 7.189 21 C 0.483 3.517 22 O -0.498 6.498 23 O -0.510 6.510 24 C -0.090 4.090 25 H 0.285 0.715 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.410 0.590 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.415 0.585 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.578 -9.001 6.863 14.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.230 4.230 11 C -0.115 4.115 12 C -0.237 4.237 13 C -0.129 4.129 14 C 0.363 3.637 15 O -0.404 6.404 16 N -0.385 5.385 17 C 0.016 3.984 18 H 0.154 0.846 19 C 0.005 3.995 20 F -0.169 7.169 21 C 0.323 3.677 22 O -0.385 6.385 23 O -0.322 6.322 24 C -0.110 4.110 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.249 0.751 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.275 0.725 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.839 -7.891 6.890 13.707 hybrid contribution 0.422 -0.362 0.079 0.562 sum -8.417 -8.254 6.970 13.695 Atomic orbital electron populations 1.69788 1.07553 1.29834 1.33515 1.25962 0.94772 1.01532 0.92322 0.86287 0.80606 0.80524 0.79218 1.19443 1.19943 1.18392 1.19576 0.98056 0.91001 1.40288 0.90066 1.17587 0.91162 0.92485 0.89134 1.21117 1.03428 0.92807 1.05620 1.20438 0.96037 0.96789 0.98275 1.20377 1.01486 0.94649 1.07193 1.19342 0.96202 0.95472 1.01893 1.18881 0.82902 0.82232 0.79714 1.90730 1.65675 1.29599 1.54362 1.45844 1.29724 1.11551 1.51363 1.20879 0.89332 0.93679 0.94543 0.84643 1.22220 0.96687 0.84508 0.96088 1.92923 1.96962 1.44911 1.82150 1.23126 0.78017 0.89374 0.77139 1.90760 1.41276 1.44404 1.62038 1.84502 1.49252 1.43427 1.54982 1.21633 0.96378 0.96302 0.96669 0.90382 0.88549 0.88817 0.89124 0.75092 0.90340 0.88890 0.72498 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.82 10.97 55.55 0.61 -20.21 16 2 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 3 Si 0.91 18.80 29.59 -169.99 -5.03 13.77 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.46 -12.12 9.05 -37.73 -0.34 -12.46 16 8 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 9 C 0.10 2.62 5.57 -106.87 -0.59 2.03 16 10 C -0.21 -5.01 9.78 -38.81 -0.38 -5.39 16 11 C -0.10 -2.10 10.01 -39.72 -0.40 -2.50 16 12 C -0.22 -4.66 9.55 -38.91 -0.37 -5.04 16 13 C -0.13 -3.00 5.87 -105.04 -0.62 -3.62 16 14 C 0.57 12.45 7.31 -12.32 -0.09 12.36 16 15 O -0.53 -12.89 14.91 5.32 0.08 -12.81 16 16 N -0.73 -12.25 4.89 -55.87 -0.27 -12.52 16 17 C 0.12 1.65 2.96 -69.09 -0.20 1.44 16 18 H 0.14 1.87 7.58 -51.92 -0.39 1.48 16 19 C 0.06 0.74 7.12 37.16 0.26 1.00 16 20 F -0.19 -3.28 15.72 2.25 0.04 -3.24 16 21 C 0.48 5.31 7.69 36.00 0.28 5.58 16 22 O -0.50 -6.84 16.60 -18.75 -0.31 -7.15 16 23 O -0.51 -3.66 13.33 -39.25 -0.52 -4.19 16 24 C -0.09 -2.40 8.23 -38.44 -0.32 -2.72 16 25 H 0.29 6.97 8.30 -40.82 -0.34 6.63 16 26 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 27 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.09 1.66 6.38 -52.49 -0.33 1.33 16 29 H 0.41 6.51 5.81 -40.82 -0.24 6.27 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.79 8.12 -51.93 -0.42 0.37 16 32 H 0.42 1.14 9.10 45.56 0.41 1.55 16 33 H 0.13 3.87 5.77 -52.48 -0.30 3.57 16 LS Contribution 298.81 15.07 4.50 4.50 Total: -1.00 -32.46 298.81 -5.86 -38.32 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -2.09 Total: 11.06 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -2.86 Total: -7.53 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.34 Total: -32.73 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.76 Total: -24.15 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.04 Total: -3.24 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.46 -5.86 -38.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077665.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.109 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds