Wall clock time and date at job start Tue Mar 31 2020 05:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86797 * 119.99853 * 2 1 4 4 H 1.48499 * 109.47385 * 275.41251 * 3 2 1 5 5 H 1.48502 * 109.47051 * 35.41419 * 3 2 1 6 6 H 1.48497 * 109.46903 * 155.41042 * 3 2 1 7 7 C 1.39935 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00367 * 341.73730 * 7 2 1 9 9 C 1.41440 * 119.99550 * 161.73448 * 7 2 1 10 10 C 1.40778 * 120.17889 * 330.17435 * 9 7 2 11 11 C 1.37712 * 120.03772 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.41585 * 359.67837 * 11 10 9 13 13 C 1.39887 * 120.35434 * 0.59984 * 12 11 10 14 14 C 1.47880 * 120.02346 * 179.69183 * 13 12 11 15 15 O 1.21549 * 119.99916 * 179.72799 * 14 13 12 16 16 N 1.34777 * 120.00299 * 359.73397 * 14 13 12 17 17 C 1.46498 * 120.00034 * 179.97438 * 16 14 13 18 18 H 1.09001 * 109.47131 * 34.99292 * 17 16 14 19 19 C 1.52998 * 109.46840 * 274.99851 * 17 16 14 20 20 F 1.39903 * 109.47721 * 60.00126 * 19 17 16 21 21 C 1.50698 * 109.47291 * 154.99541 * 17 16 14 22 22 O 1.20822 * 119.99819 * 359.72689 * 21 17 16 23 23 O 1.34229 * 120.00104 * 179.97438 * 21 17 16 24 24 C 1.39035 * 119.94622 * 359.42738 * 13 12 11 25 25 H 0.97003 * 120.00211 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.98170 * 0.02562 * 10 9 7 27 27 H 1.08006 * 119.79109 * 180.02562 * 11 10 9 28 28 H 1.08000 * 119.82528 * 180.29867 * 12 11 10 29 29 H 0.96993 * 119.99816 * 359.97438 * 16 14 13 30 30 H 1.09007 * 109.47454 * 180.02562 * 19 17 16 31 31 H 1.09007 * 109.47197 * 299.99738 * 19 17 16 32 32 H 0.96697 * 117.00102 * 180.02562 * 23 21 17 33 33 H 1.07997 * 120.19717 * 180.25226 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3754 2.1125 -1.3938 5 1 1.5015 2.6169 0.8113 6 1 3.5922 1.4099 0.5826 7 6 2.0079 -1.2119 -0.0005 8 1 1.5088 -2.1237 0.2921 9 6 3.3689 -1.2425 -0.3845 10 6 3.8625 -0.3099 -1.3164 11 6 5.1879 -0.3427 -1.6885 12 6 6.0445 -1.2847 -1.1469 13 6 5.5708 -2.2231 -0.2239 14 6 6.4912 -3.2310 0.3452 15 8 6.0802 -4.0430 1.1509 16 7 7.7858 -3.2491 -0.0293 17 6 8.6977 -4.2472 0.5350 18 1 8.1602 -5.1824 0.6926 19 6 9.2436 -3.7412 1.8717 20 9 8.1823 -3.5257 2.7574 21 6 9.8408 -4.4795 -0.4190 22 8 9.8864 -3.8771 -1.4654 23 8 10.8059 -5.3593 -0.1086 24 6 4.2352 -2.2039 0.1620 25 1 -0.4850 0.8401 -0.0004 26 1 3.2012 0.4318 -1.7397 27 1 5.5625 0.3750 -2.4035 28 1 7.0834 -1.2987 -1.4419 29 1 8.1137 -2.6013 -0.6724 30 1 9.9225 -4.4837 2.2914 31 1 9.7810 -2.8060 1.7141 32 1 11.5188 -5.4740 -0.7517 33 1 3.8661 -2.9239 0.8774 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601077668.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:29 Heat of formation + Delta-G solvation = -181.139996 kcal Electronic energy + Delta-G solvation = -21370.633157 eV Core-core repulsion = 17695.410544 eV Total energy + Delta-G solvation = -3675.222612 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.64536 -41.78779 -40.77683 -39.08778 -37.35690 -36.13598 -35.57296 -32.93822 -31.91493 -30.99550 -27.13808 -25.95608 -24.81163 -22.66438 -22.31818 -21.64988 -20.03147 -19.12068 -18.46738 -17.89402 -17.74814 -17.32072 -16.93666 -16.55530 -16.41610 -16.19854 -15.87924 -15.44576 -15.34088 -14.89986 -14.57484 -14.47207 -13.93943 -13.78532 -13.38599 -12.98331 -12.82848 -12.69374 -12.62587 -12.32953 -12.08114 -11.89568 -11.75885 -11.58225 -11.23576 -10.92302 -10.43748 -9.65165 -9.59965 -8.91995 -6.55970 0.13459 0.72833 0.89649 1.25797 1.40116 1.42260 1.48839 1.88892 2.11936 2.16857 2.63105 3.33105 3.45306 3.66286 3.78329 3.91778 4.19894 4.24051 4.27456 4.38541 4.56431 4.62262 4.86661 4.89920 5.09809 5.15085 5.40310 5.42175 5.61938 5.69634 5.83402 6.06367 6.27667 6.37852 6.64222 6.73478 6.80786 7.08603 8.16972 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.031071 B = 0.004175 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.942080 B = 6704.206186 C = 7049.200815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.047 3.953 3 Si 0.966 3.034 4 H -0.246 1.246 5 H -0.277 1.277 6 H -0.252 1.252 7 C -0.488 4.488 8 H 0.051 0.949 9 C 0.066 3.934 10 C -0.223 4.223 11 C -0.082 4.082 12 C -0.185 4.185 13 C -0.113 4.113 14 C 0.572 3.428 15 O -0.561 6.561 16 N -0.708 5.708 17 C 0.115 3.885 18 H 0.131 0.869 19 C 0.055 3.945 20 F -0.222 7.222 21 C 0.503 3.497 22 O -0.526 6.526 23 O -0.493 6.493 24 C -0.163 4.163 25 H 0.295 0.705 26 H 0.108 0.892 27 H 0.147 0.853 28 H 0.143 0.857 29 H 0.419 0.581 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.440 0.560 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.250 -3.530 -1.468 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.168 4.168 3 Si 0.789 3.211 4 H -0.171 1.171 5 H -0.203 1.203 6 H -0.176 1.176 7 C -0.517 4.517 8 H 0.070 0.930 9 C 0.064 3.936 10 C -0.243 4.243 11 C -0.100 4.100 12 C -0.204 4.204 13 C -0.116 4.116 14 C 0.362 3.638 15 O -0.439 6.439 16 N -0.365 5.365 17 C 0.008 3.992 18 H 0.148 0.852 19 C -0.001 4.001 20 F -0.203 7.203 21 C 0.344 3.656 22 O -0.415 6.415 23 O -0.307 6.307 24 C -0.183 4.183 25 H 0.106 0.894 26 H 0.125 0.875 27 H 0.164 0.836 28 H 0.161 0.839 29 H 0.259 0.741 30 H 0.150 0.850 31 H 0.119 0.881 32 H 0.304 0.696 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 22.389 -3.837 -0.877 22.733 hybrid contribution -0.204 0.458 -0.502 0.709 sum 22.185 -3.379 -1.378 22.484 Atomic orbital electron populations 1.69722 1.09317 1.31680 1.36679 1.26886 0.95402 1.04337 0.90181 0.85479 0.79583 0.76012 0.80068 1.17116 1.20332 1.17562 1.19467 0.94459 0.95802 1.41997 0.93042 1.17769 0.92520 0.92291 0.91045 1.21395 0.97336 1.03475 1.02074 1.21026 0.92340 0.98005 0.98605 1.20985 1.00118 0.97989 1.01313 1.19599 0.93367 0.97837 1.00800 1.18489 0.81750 0.83498 0.80087 1.90725 1.77189 1.41261 1.34761 1.45535 1.08085 1.35239 1.47664 1.21077 0.89301 0.96421 0.92396 0.85161 1.22582 0.86815 1.05303 0.85402 1.92848 1.60656 1.96635 1.70141 1.22399 0.82168 0.76115 0.84870 1.90773 1.76316 1.48305 1.26082 1.84433 1.35573 1.56952 1.53751 1.21204 0.92601 1.02321 1.02188 0.89398 0.87467 0.83556 0.83914 0.74080 0.84956 0.88062 0.69611 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.98 13.93 21.82 0.30 -46.67 16 2 C 0.05 2.52 5.40 85.25 0.46 2.98 16 3 Si 0.97 41.89 24.52 68.60 1.68 43.57 16 4 H -0.25 -9.70 6.71 99.48 0.67 -9.04 16 5 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.25 -11.14 6.86 99.48 0.68 -10.46 16 7 C -0.49 -28.19 9.57 23.47 0.22 -27.97 16 8 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 9 C 0.07 3.45 5.10 -21.32 -0.11 3.34 16 10 C -0.22 -10.11 7.17 22.77 0.16 -9.95 16 11 C -0.08 -3.03 10.01 22.18 0.22 -2.81 16 12 C -0.18 -6.52 9.55 22.70 0.22 -6.31 16 13 C -0.11 -4.73 5.87 -20.13 -0.12 -4.85 16 14 C 0.57 21.68 7.31 86.80 0.63 22.32 16 15 O -0.56 -24.81 14.91 -3.87 -0.06 -24.87 16 16 N -0.71 -19.32 4.89 -448.95 -2.20 -21.52 16 17 C 0.12 2.37 2.96 44.24 0.13 2.50 16 18 H 0.13 2.94 7.58 -2.39 -0.02 2.92 16 19 C 0.05 0.96 7.12 71.98 0.51 1.47 16 20 F -0.22 -6.54 15.72 44.97 0.71 -5.83 16 21 C 0.50 7.90 7.69 71.24 0.55 8.44 16 22 O -0.53 -11.23 16.60 21.98 0.36 -10.86 16 23 O -0.49 -3.84 13.33 -51.41 -0.69 -4.53 16 24 C -0.16 -8.16 9.34 23.01 0.21 -7.94 16 25 H 0.30 14.57 8.30 -92.71 -0.77 13.80 16 26 H 0.11 4.75 4.72 -2.91 -0.01 4.74 16 27 H 0.15 4.15 8.06 -2.91 -0.02 4.12 16 28 H 0.14 3.78 6.38 -2.91 -0.02 3.76 16 29 H 0.42 10.04 5.81 -92.71 -0.54 9.50 16 30 H 0.13 1.34 8.11 -2.38 -0.02 1.32 16 31 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.44 -0.49 9.10 -74.06 -0.67 -1.17 16 33 H 0.09 4.97 7.64 -2.91 -0.02 4.95 16 Total: -1.00 -74.22 293.53 3.13 -71.08 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -0.08 Total: 18.39 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 3.10 Total: -18.77 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -1.89 Total: -68.19 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -0.38 Total: -40.26 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 0.71 Total: -5.83 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.68 Total: 43.57 kcal Total: -74.22 3.13 -71.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077668.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.056 kcal (2) G-P(sol) polarization free energy of solvation -74.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds