Wall clock time and date at job start Tue Mar 31 2020 05:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37988 * 119.49878 * 2 1 4 4 C 1.40016 * 119.17135 * 179.97438 * 3 2 1 5 5 C 1.48059 * 120.88828 * 179.97438 * 4 3 2 6 6 O 1.21426 * 120.00166 * 180.02562 * 5 4 3 7 7 O 1.34668 * 120.00035 * 0.02562 * 5 4 3 8 8 C 1.39586 * 118.22270 * 359.75520 * 4 3 2 9 9 N 1.48014 * 120.53428 * 180.26493 * 8 4 3 10 10 O 1.21804 * 120.00240 * 270.22136 * 9 8 4 11 11 O 1.21802 * 120.00293 * 90.22543 * 9 8 4 12 12 C 1.39072 * 118.92513 * 0.48253 * 8 4 3 13 13 N 1.39037 * 119.64115 * 179.78294 * 12 8 4 14 14 C 1.46499 * 120.00070 * 179.72922 * 13 12 8 15 15 C 1.50701 * 109.46992 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99594 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99875 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99430 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99876 * 19 17 15 23 23 N 1.31890 * 119.49754 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.46970 * 270.02233 * 1 2 3 25 25 H 1.08998 * 109.47012 * 30.02117 * 1 2 3 26 26 H 1.09001 * 109.46853 * 150.02400 * 1 2 3 27 27 H 1.08009 * 120.41409 * 359.97438 * 3 2 1 28 28 H 0.96704 * 117.00247 * 179.97438 * 7 5 4 29 29 H 0.97000 * 119.99510 * 359.72005 * 13 12 8 30 30 H 1.09002 * 109.47391 * 59.99525 * 14 13 12 31 31 H 1.09001 * 109.46813 * 299.99581 * 14 13 12 32 32 H 0.97002 * 119.99739 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1865 1.2010 0.0000 4 6 3.5866 1.1930 0.0005 5 6 4.3540 2.4592 0.0000 6 8 5.5680 2.4335 0.0000 7 8 3.7055 3.6395 -0.0005 8 6 4.2397 -0.0407 0.0063 9 7 5.7183 -0.1088 0.0131 10 8 6.3316 -0.1352 -1.0390 11 8 6.3218 -0.1385 1.0706 12 6 3.4787 -1.2046 0.0010 13 7 4.1138 -2.4415 0.0021 14 6 3.3198 -3.6726 0.0025 15 6 4.2416 -4.8648 0.0031 16 1 5.3118 -4.7200 0.0035 17 6 3.7186 -6.1406 0.0041 18 7 4.5231 -7.1810 0.0050 19 14 1.8675 -6.3912 0.0041 20 1 1.3772 -6.4588 -1.3961 21 1 1.5396 -7.6586 0.7050 22 1 1.2142 -5.2555 0.7031 23 7 2.1565 -1.1479 0.0005 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6450 2.1356 -0.0004 28 1 4.2493 4.4392 -0.0005 29 1 5.0826 -2.4891 0.0024 30 1 2.6913 -3.7001 -0.8877 31 1 2.6907 -3.6989 0.8923 32 1 4.1552 -8.0785 0.0054 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607589548.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:26 Heat of formation + Delta-G solvation = -46.372839 kcal Electronic energy + Delta-G solvation = -21839.127661 eV Core-core repulsion = 18189.668953 eV Total energy + Delta-G solvation = -3649.458708 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.11714 -40.77811 -40.03479 -36.62102 -36.23491 -36.14145 -33.73120 -33.01373 -31.45344 -29.26335 -27.77628 -25.74312 -24.88938 -22.84618 -22.25510 -21.08469 -19.28948 -18.73317 -18.47545 -17.83332 -17.59400 -17.05823 -16.18450 -16.15027 -15.75802 -15.08034 -14.66664 -14.55248 -13.94003 -13.64305 -13.59812 -12.99861 -12.61737 -12.56988 -12.48914 -12.06615 -11.35412 -11.33538 -11.16629 -11.08026 -10.99741 -10.76542 -10.55174 -10.14758 -10.03392 -9.91596 -9.64332 -8.85448 -7.86160 -6.33065 -4.38362 -0.05593 0.80139 0.84209 1.54528 2.12159 2.26769 3.12568 3.16076 3.25000 3.25368 3.30841 3.96676 4.19382 4.26303 4.42025 4.59922 4.84547 5.00421 5.06196 5.31657 5.34433 5.44919 5.62707 5.91582 5.99917 6.33840 6.57395 6.78405 7.02850 7.09578 7.31046 7.38756 7.89237 7.96644 8.19850 8.64674 9.22412 10.78790 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.020809 B = 0.005487 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.218604 B = 5102.109467 C = 6308.629444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.216 3.784 3 C -0.192 4.192 4 C 0.015 3.985 5 C 0.524 3.476 6 O -0.487 6.487 7 O -0.499 6.499 8 C -0.133 4.133 9 N 0.038 4.962 10 O -0.135 6.135 11 O -0.136 6.136 12 C 0.461 3.539 13 N -0.671 5.671 14 C 0.227 3.773 15 C -0.555 4.555 16 H 0.081 0.919 17 C 0.082 3.918 18 N -0.884 5.884 19 Si 0.879 3.121 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.260 1.260 23 N -0.499 5.499 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.162 0.838 28 H 0.422 0.578 29 H 0.411 0.589 30 H 0.030 0.970 31 H 0.035 0.965 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.377 19.619 0.028 21.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.072 3.928 3 C -0.216 4.216 4 C 0.006 3.994 5 C 0.365 3.635 6 O -0.374 6.374 7 O -0.311 6.311 8 C -0.224 4.224 9 N 0.569 4.431 10 O -0.358 6.358 11 O -0.358 6.358 12 C 0.217 3.783 13 N -0.293 5.293 14 C 0.106 3.894 15 C -0.593 4.593 16 H 0.099 0.901 17 C -0.123 4.123 18 N -0.521 5.521 19 Si 0.705 3.295 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.185 1.185 23 N -0.220 5.220 24 H 0.109 0.891 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.180 0.820 28 H 0.282 0.718 29 H 0.248 0.752 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.521 17.995 0.027 20.845 hybrid contribution 0.801 0.965 -0.012 1.254 sum -9.721 18.961 0.015 21.307 Atomic orbital electron populations 1.20881 0.87020 1.04565 1.04198 1.21401 0.97660 0.86665 0.87105 1.21852 0.90881 1.00720 1.08179 1.18652 0.93994 0.87812 0.98969 1.20568 0.85551 0.84250 0.73143 1.91038 1.14534 1.87909 1.43892 1.84487 1.44803 1.16336 1.85479 1.21086 0.80825 0.94951 1.25582 1.42955 1.02235 0.97518 1.00429 1.94540 1.68290 1.51784 1.21217 1.94540 1.69065 1.51811 1.20432 1.17863 0.87808 0.84796 0.87791 1.45662 1.09894 1.02801 1.70984 1.19739 0.92142 0.80083 0.97486 1.21015 0.94719 0.88959 1.54566 0.90117 1.24764 0.98539 0.95382 0.93620 1.69874 1.35278 0.98625 1.48288 0.86795 0.85164 0.78484 0.79082 1.19696 1.20666 1.18458 1.67399 1.05189 1.29226 1.20199 0.89077 0.89610 0.89355 0.82015 0.71840 0.75223 0.95201 0.94738 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.16 36.01 0.37 -0.48 16 2 C 0.22 2.62 6.77 -82.66 -0.56 2.06 16 3 C -0.19 -2.11 9.32 -39.01 -0.36 -2.47 16 4 C 0.02 0.22 5.90 -104.70 -0.62 -0.40 16 5 C 0.52 6.87 8.30 34.76 0.29 7.16 16 6 O -0.49 -8.13 15.51 -24.33 -0.38 -8.51 16 7 O -0.50 -4.03 12.78 -40.41 -0.52 -4.54 16 8 C -0.13 -2.36 6.22 -79.14 -0.49 -2.86 16 9 N 0.04 0.75 1.73 34.36 0.06 0.81 16 10 O -0.14 -2.76 19.00 -32.40 -0.62 -3.38 16 11 O -0.14 -2.77 19.03 -32.10 -0.61 -3.38 16 12 C 0.46 8.59 7.48 -155.06 -1.16 7.43 16 13 N -0.67 -14.20 5.69 -61.62 -0.35 -14.55 16 14 C 0.23 5.30 4.51 -5.19 -0.02 5.27 16 15 C -0.55 -15.14 9.83 -34.44 -0.34 -15.48 16 16 H 0.08 2.38 7.84 -52.49 -0.41 1.97 16 17 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 18 N -0.88 -25.99 13.96 55.43 0.77 -25.21 16 19 Si 0.88 20.27 27.47 -169.99 -4.67 15.60 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 23 N -0.50 -8.33 9.44 -8.71 -0.08 -8.42 16 24 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.09 0.41 8.07 -51.93 -0.42 0.00 16 26 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.16 1.18 7.71 -52.48 -0.40 0.77 16 28 H 0.42 1.42 9.11 45.56 0.42 1.84 16 29 H 0.41 8.81 7.55 -40.82 -0.31 8.50 16 30 H 0.03 0.70 7.57 -51.93 -0.39 0.31 16 31 H 0.03 0.82 7.20 -51.93 -0.37 0.44 16 32 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 298.97 15.07 4.51 4.51 Total: -1.00 -33.66 298.97 -6.79 -40.45 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -1.91 Total: 4.21 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -3.00 Total: 2.40 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.40 Total: -47.37 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -2.12 Total: -19.81 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.67 Total: 15.60 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.66 -6.79 -40.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607589548.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.921 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds