Wall clock time and date at job start Tue Mar 31 2020 05:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86804 * 119.99838 * 2 1 4 4 H 1.48496 * 109.46908 * 269.99598 * 3 2 1 5 5 H 1.48496 * 109.47210 * 29.99669 * 3 2 1 6 6 H 1.48506 * 109.46920 * 149.99836 * 3 2 1 7 7 C 1.40048 * 120.00349 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00244 * 180.02562 * 7 2 1 9 9 C 1.46374 * 119.99684 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00240 * 0.02562 * 9 7 2 11 11 N 1.34778 * 120.00214 * 180.02562 * 9 7 2 12 12 C 1.46500 * 120.00431 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47380 * 179.97438 * 12 11 9 14 14 H 1.09005 * 109.46599 * 305.00296 * 13 12 11 15 15 C 1.50696 * 109.46696 * 65.00043 * 13 12 11 16 16 O 1.20829 * 119.99901 * 120.00697 * 15 13 12 17 17 O 1.34229 * 120.00248 * 299.99636 * 15 13 12 18 18 C 1.50697 * 109.47122 * 185.00116 * 13 12 11 19 19 C 1.38244 * 119.97167 * 120.00032 * 18 13 12 20 20 C 1.38205 * 120.02263 * 179.97438 * 19 18 13 21 21 C 1.38459 * 119.97412 * 0.28333 * 20 19 18 22 22 F 1.35099 * 120.02759 * 179.72396 * 21 20 19 23 23 C 1.38466 * 119.94836 * 359.48301 * 21 20 19 24 24 C 1.38195 * 119.97197 * 0.49199 * 23 21 20 25 25 H 0.96994 * 119.99901 * 0.02562 * 1 2 3 26 26 H 0.97004 * 119.99732 * 359.97438 * 11 9 7 27 27 H 1.09006 * 109.46730 * 59.99966 * 12 11 9 28 28 H 1.08997 * 109.47192 * 300.00264 * 12 11 9 29 29 H 0.96695 * 116.99838 * 180.02562 * 17 15 13 30 30 H 1.07999 * 119.98932 * 0.02562 * 19 18 13 31 31 H 1.08002 * 120.00949 * 179.97438 * 20 19 18 32 32 H 1.07997 * 120.00962 * 180.25357 * 23 21 20 33 33 H 1.08000 * 119.98534 * 179.78274 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4883 2.0464 -1.4000 5 1 1.4381 2.6527 0.6999 6 1 3.5383 1.4402 0.7001 7 6 2.0071 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0017 10 8 0.0583 -2.4805 0.0017 11 7 1.9490 -3.6477 0.0027 12 6 1.2166 -4.9164 0.0033 13 6 2.2108 -6.0794 0.0038 14 1 2.8950 -5.9727 -0.8381 15 6 2.9936 -6.0703 1.2915 16 8 2.9478 -7.0232 2.0330 17 8 3.7419 -5.0038 1.6146 18 6 1.4615 -7.3810 -0.1195 19 6 1.7047 -8.2191 -1.1916 20 6 1.0185 -9.4133 -1.3055 21 6 0.0828 -9.7674 -0.3483 22 9 -0.5927 -10.9319 -0.4614 23 6 -0.1565 -8.9294 0.7277 24 6 0.5313 -7.7360 0.8397 25 1 -0.4850 0.8400 -0.0004 26 1 2.9191 -3.6477 0.0023 27 1 0.5903 -4.9747 -0.8870 28 1 0.5896 -4.9736 0.8930 29 1 4.2263 -5.0445 2.4505 30 1 2.4319 -7.9409 -1.9401 31 1 1.2084 -10.0677 -2.1434 32 1 -0.8831 -9.2065 1.4771 33 1 0.3423 -7.0806 1.6770 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608178105.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:22 Heat of formation + Delta-G solvation = -154.588023 kcal Electronic energy + Delta-G solvation = -21226.695886 eV Core-core repulsion = 17552.624653 eV Total energy + Delta-G solvation = -3674.071233 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.98709 -40.66616 -38.92764 -37.31163 -36.00986 -34.55551 -32.53150 -31.59520 -31.25278 -28.41155 -26.34215 -24.03846 -23.23010 -22.71671 -20.43928 -19.70545 -18.14129 -17.77422 -17.18599 -16.90004 -16.19267 -15.66793 -15.62296 -15.46105 -15.08679 -14.43849 -14.17594 -13.83423 -13.77551 -13.61059 -13.31372 -12.82613 -12.35476 -12.25851 -11.88399 -11.68613 -11.46479 -11.36247 -11.12499 -11.01776 -10.94253 -10.45969 -10.34688 -10.23463 -9.18098 -8.86546 -8.71595 -7.65107 -7.56860 -6.20157 -4.65138 0.96952 1.15704 2.25063 3.02489 3.13355 3.20365 3.23588 3.56906 4.07125 4.14361 4.30640 4.55569 4.57947 4.76640 4.88344 5.08073 5.11670 5.19220 5.34965 5.36640 5.75284 5.79164 5.86379 5.99673 6.10797 6.20357 6.27319 6.40639 6.57073 6.76254 7.42733 7.89927 7.99142 8.02617 8.31544 9.01483 9.51004 10.58155 10.76368 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.028908 B = 0.003820 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.374180 B = 7327.351978 C = 7854.196651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.069 0.931 9 C 0.555 3.445 10 O -0.582 6.582 11 N -0.764 5.764 12 C 0.146 3.854 13 C -0.051 4.051 14 H 0.122 0.878 15 C 0.489 3.511 16 O -0.516 6.516 17 O -0.500 6.500 18 C -0.081 4.081 19 C -0.076 4.076 20 C -0.157 4.157 21 C 0.099 3.901 22 F -0.142 7.142 23 C -0.153 4.153 24 C -0.052 4.052 25 H 0.268 0.732 26 H 0.387 0.613 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.409 0.591 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.996 -14.697 -0.538 15.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.087 0.913 9 C 0.359 3.641 10 O -0.465 6.465 11 N -0.422 5.422 12 C 0.021 3.979 13 C -0.071 4.071 14 H 0.139 0.861 15 C 0.332 3.668 16 O -0.405 6.405 17 O -0.311 6.311 18 C -0.082 4.082 19 C -0.094 4.094 20 C -0.176 4.176 21 C 0.080 3.920 22 F -0.121 7.121 23 C -0.172 4.172 24 C -0.070 4.070 25 H 0.079 0.921 26 H 0.221 0.779 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.268 0.732 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.654 -14.870 -0.702 15.598 hybrid contribution 1.121 0.500 0.575 1.355 sum 5.775 -14.371 -0.127 15.488 Atomic orbital electron populations 1.70019 1.07059 1.27266 1.35355 1.25711 0.94607 1.00290 0.92645 0.86376 0.80147 0.81421 0.78816 1.19760 1.20519 1.18906 1.20863 0.93628 0.89237 1.54244 0.91322 1.18221 0.87164 0.82354 0.76328 1.90608 1.14126 1.86818 1.54933 1.46197 1.09017 1.04096 1.82907 1.20825 0.92483 0.82363 1.02274 1.20272 0.97291 0.94992 0.94501 0.86066 1.23171 0.76683 0.79255 0.87737 1.90715 1.62094 1.35814 1.51848 1.84573 1.58386 1.43137 1.44996 1.19243 0.97980 0.94813 0.96142 1.20866 0.98699 0.92625 0.97201 1.21041 0.98006 0.98662 0.99877 1.17746 0.94341 0.83097 0.96852 1.91488 1.78609 1.45988 1.96018 1.21107 1.02603 0.95162 0.98327 1.20877 0.93185 0.95219 0.97745 0.92115 0.77911 0.91310 0.92649 0.73228 0.84669 0.84624 0.84596 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.71 11.83 55.55 0.66 -22.05 16 2 C 0.09 2.39 5.50 -17.37 -0.10 2.29 16 3 Si 0.91 19.72 29.56 -169.99 -5.02 14.70 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.54 -14.93 9.54 -35.63 -0.34 -15.27 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.56 15.30 7.75 -12.99 -0.10 15.20 16 10 O -0.58 -18.43 15.02 5.20 0.08 -18.35 16 11 N -0.76 -16.05 5.06 -61.72 -0.31 -16.37 16 12 C 0.15 2.59 4.79 -4.04 -0.02 2.57 16 13 C -0.05 -0.68 2.54 -92.93 -0.24 -0.92 16 14 H 0.12 1.34 7.87 -51.93 -0.41 0.93 16 15 C 0.49 6.78 7.49 36.00 0.27 7.05 16 16 O -0.52 -8.09 15.87 -18.75 -0.30 -8.39 16 17 O -0.50 -6.19 11.42 -39.26 -0.45 -6.64 16 18 C -0.08 -1.03 4.40 -104.62 -0.46 -1.49 16 19 C -0.08 -0.82 9.67 -39.59 -0.38 -1.20 16 20 C -0.16 -1.68 10.03 -39.51 -0.40 -2.08 16 21 C 0.10 1.19 7.30 -39.42 -0.29 0.90 16 22 F -0.14 -1.75 17.27 2.25 0.04 -1.71 16 23 C -0.15 -1.86 10.03 -39.51 -0.40 -2.26 16 24 C -0.05 -0.69 7.98 -39.59 -0.32 -1.00 16 25 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 26 H 0.39 7.19 6.93 -40.82 -0.28 6.91 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.06 1.06 7.57 -51.93 -0.39 0.67 16 29 H 0.41 3.30 9.10 45.56 0.41 3.71 16 30 H 0.14 1.10 7.94 -52.49 -0.42 0.69 16 31 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.13 1.78 7.57 -52.49 -0.40 1.38 16 LS Contribution 301.74 15.07 4.55 4.55 Total: -1.00 -35.77 301.74 -5.82 -41.59 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -2.30 Total: 8.89 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -2.76 Total: 3.79 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.35 Total: -38.42 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.67 Total: -33.37 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -35.77 -5.82 -41.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608178105.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.001 kcal (2) G-P(sol) polarization free energy of solvation -35.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds