Wall clock time and date at job start Tue Mar 31 2020 05:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00102 * 2 1 4 4 H 1.48506 * 109.46922 * 239.99444 * 3 2 1 5 5 H 1.48500 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47202 * 119.99514 * 3 2 1 7 7 C 1.37884 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99905 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99703 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46688 * 179.97438 * 9 7 2 11 11 N 1.46508 * 109.46670 * 180.02562 * 10 9 7 12 12 C 1.34772 * 119.99711 * 179.97438 * 11 10 9 13 13 O 1.21555 * 120.00241 * 0.02562 * 12 11 10 14 14 C 1.47860 * 119.99826 * 179.97438 * 12 11 10 15 15 C 1.39687 * 120.06161 * 0.02562 * 14 12 11 16 16 C 1.38285 * 120.13332 * 179.97438 * 15 14 12 17 17 F 1.35099 * 119.87527 * 180.02562 * 16 15 14 18 18 C 1.38311 * 120.24763 * 359.97438 * 16 15 14 19 19 C 1.39693 * 120.11079 * 0.02562 * 18 16 15 20 20 C 1.47743 * 120.06346 * 180.02562 * 19 18 16 21 21 O 1.21468 * 120.00440 * 180.02562 * 20 19 18 22 22 O 1.34711 * 120.00226 * 0.02562 * 20 19 18 23 23 C 1.39288 * 120.05970 * 180.27481 * 14 12 11 24 24 H 0.97002 * 119.99875 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46892 * 60.00533 * 9 7 2 26 26 H 1.09003 * 109.47348 * 300.00140 * 9 7 2 27 27 H 1.08999 * 109.47012 * 60.00615 * 10 9 7 28 28 H 1.08995 * 109.46854 * 299.99741 * 10 9 7 29 29 H 0.96995 * 119.99960 * 0.02562 * 11 10 9 30 30 H 1.07998 * 119.93176 * 359.97013 * 15 14 12 31 31 H 1.08001 * 119.94297 * 180.02562 * 18 16 15 32 32 H 0.96700 * 117.00324 * 180.02562 * 22 20 19 33 33 H 1.08004 * 120.11632 * 0.02562 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5126 -4.9309 -0.0001 12 6 2.1865 -6.0981 -0.0007 13 8 3.4020 -6.0981 -0.0003 14 6 1.4472 -7.3785 -0.0008 15 6 0.0503 -7.3800 -0.0007 16 6 -0.6427 -8.5767 -0.0013 17 9 -1.9937 -8.5720 -0.0017 18 6 0.0422 -9.7784 -0.0025 19 6 1.4391 -9.7889 -0.0025 20 6 2.1695 -11.0731 -0.0044 21 8 3.3842 -11.0810 -0.0040 22 8 1.4885 -12.2354 -0.0065 23 6 2.1423 -8.5855 0.0044 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6239 -2.5568 0.8903 27 1 2.8718 -3.6044 0.8906 28 1 2.8718 -3.6044 -0.8894 29 1 0.5427 -4.9308 -0.0008 30 1 -0.4896 -6.4446 -0.0001 31 1 -0.5040 -10.7101 -0.0033 32 1 2.0100 -13.0498 -0.0073 33 1 3.2223 -8.5889 0.0088 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181836.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:44 Heat of formation + Delta-G solvation = -155.750133 kcal Electronic energy + Delta-G solvation = -20408.662552 eV Core-core repulsion = 16734.540927 eV Total energy + Delta-G solvation = -3674.121625 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.27364 -40.89333 -39.87244 -38.11557 -36.50403 -35.08181 -33.09643 -32.14845 -31.01229 -29.59020 -25.43796 -25.40355 -23.66862 -21.87914 -21.16407 -20.48985 -18.70112 -18.31652 -17.10048 -16.66456 -16.46893 -16.22190 -16.14109 -15.95259 -15.81380 -15.06458 -15.05180 -14.52358 -13.99141 -13.57908 -13.35808 -13.34873 -12.52288 -12.35930 -12.31027 -12.25133 -11.94874 -11.27734 -11.11311 -11.06695 -10.70801 -10.41567 -10.05258 -9.69368 -9.60799 -9.32633 -9.26536 -8.67419 -8.43637 -6.13711 -4.16985 -0.00284 0.48447 1.89817 2.45321 2.77218 3.28918 3.31489 3.33283 3.39438 3.50175 3.66858 4.25859 4.32419 4.39406 4.56993 4.62819 4.92590 5.09206 5.23540 5.27869 5.42634 5.69649 5.77034 6.02054 6.17654 6.24892 6.26042 6.62119 6.71493 7.43211 7.43684 7.53557 7.77293 7.84010 8.19940 8.38776 8.88478 9.48227 10.97816 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.030660 B = 0.003084 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.018051 B = 9076.532084 C = 9969.099974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.712 5.712 12 C 0.549 3.451 13 O -0.534 6.534 14 C -0.105 4.105 15 C -0.086 4.086 16 C 0.086 3.914 17 F -0.129 7.129 18 C -0.079 4.079 19 C -0.109 4.109 20 C 0.531 3.469 21 O -0.501 6.501 22 O -0.511 6.511 23 C -0.009 4.009 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.397 0.603 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.418 0.582 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.072 -22.483 0.001 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.362 5.362 12 C 0.334 3.666 13 O -0.413 6.413 14 C -0.109 4.109 15 C -0.105 4.105 16 C 0.067 3.933 17 F -0.107 7.107 18 C -0.098 4.098 19 C -0.110 4.110 20 C 0.375 3.625 21 O -0.389 6.389 22 O -0.323 6.323 23 C -0.028 4.028 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.232 0.768 30 H 0.169 0.831 31 H 0.173 0.827 32 H 0.277 0.723 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.298 -21.945 0.003 22.065 hybrid contribution -0.116 0.408 -0.002 0.424 sum -2.413 -21.537 0.000 21.672 Atomic orbital electron populations 1.69938 1.06103 1.27088 1.50122 1.24993 0.94903 0.99445 0.94880 0.86558 0.79516 0.82566 0.78819 1.20079 1.21222 1.20074 1.20995 0.93246 0.90298 1.51721 0.92210 1.19339 0.94188 0.91058 0.97954 1.21847 0.96160 0.80884 1.01275 1.46301 1.10642 1.06481 1.72730 1.17969 0.87302 0.83407 0.77936 1.90798 1.13010 1.87342 1.50133 1.19926 0.92473 0.94703 1.03760 1.21725 0.93996 0.98434 0.96390 1.17300 0.77576 0.93730 1.04737 1.91571 1.27891 1.97282 1.93981 1.21569 0.93541 0.98297 0.96420 1.18692 0.92507 0.90746 1.09087 1.20579 0.85381 0.84135 0.72436 1.90949 1.14718 1.87925 1.45332 1.84529 1.45023 1.16970 1.85825 1.21461 1.02237 0.88825 0.90265 0.92720 0.95845 0.95833 0.92048 0.92058 0.76764 0.83055 0.82679 0.72290 0.82252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -14.18 9.11 -34.44 -0.31 -14.50 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.14 16 10 C 0.12 2.43 5.61 -4.04 -0.02 2.41 16 11 N -0.71 -11.66 5.51 -61.24 -0.34 -11.99 16 12 C 0.55 8.90 7.77 -12.32 -0.10 8.80 16 13 O -0.53 -10.56 16.34 5.32 0.09 -10.47 16 14 C -0.11 -1.31 5.87 -105.03 -0.62 -1.93 16 15 C -0.09 -0.88 9.51 -39.02 -0.37 -1.25 16 16 C 0.09 0.81 7.28 -39.54 -0.29 0.53 16 17 F -0.13 -1.28 17.26 2.25 0.04 -1.24 16 18 C -0.08 -0.67 9.59 -39.01 -0.37 -1.05 16 19 C -0.11 -1.09 5.87 -105.05 -0.62 -1.70 16 20 C 0.53 5.12 8.27 34.62 0.29 5.41 16 21 O -0.50 -6.41 17.12 -19.24 -0.33 -6.74 16 22 O -0.51 -3.11 12.67 -40.52 -0.51 -3.63 16 23 C -0.01 -0.10 9.13 -38.77 -0.35 -0.46 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.40 5.48 6.50 -40.82 -0.27 5.21 16 30 H 0.15 1.34 6.39 -52.49 -0.34 1.00 16 31 H 0.16 0.99 7.60 -52.49 -0.40 0.59 16 32 H 0.42 0.70 9.11 45.56 0.42 1.12 16 33 H 0.16 2.09 7.23 -52.48 -0.38 1.71 16 LS Contribution 307.05 15.07 4.63 4.63 Total: -1.00 -32.95 307.05 -5.91 -38.86 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -2.20 Total: 1.49 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -3.00 Total: -2.05 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.40 Total: -36.89 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.76 Total: -20.84 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.95 -5.91 -38.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181836.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.892 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds