Wall clock time and date at job start Tue Mar 31 2020 05:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00102 * 2 1 4 4 H 1.48506 * 109.46922 * 239.99444 * 3 2 1 5 5 H 1.48500 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47202 * 119.99514 * 3 2 1 7 7 C 1.37884 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99905 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99703 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46688 * 179.97438 * 9 7 2 11 11 N 1.46508 * 109.46670 * 180.02562 * 10 9 7 12 12 C 1.34772 * 119.99711 * 179.97438 * 11 10 9 13 13 O 1.21555 * 120.00241 * 0.02562 * 12 11 10 14 14 C 1.47860 * 119.99826 * 179.97438 * 12 11 10 15 15 C 1.39687 * 120.06161 * 0.02562 * 14 12 11 16 16 C 1.38285 * 120.13332 * 179.97438 * 15 14 12 17 17 F 1.35099 * 119.87527 * 180.02562 * 16 15 14 18 18 C 1.38311 * 120.24763 * 359.97438 * 16 15 14 19 19 C 1.39693 * 120.11079 * 0.02562 * 18 16 15 20 20 C 1.47743 * 120.06346 * 180.02562 * 19 18 16 21 21 O 1.21468 * 120.00440 * 180.02562 * 20 19 18 22 22 O 1.34711 * 120.00226 * 0.02562 * 20 19 18 23 23 C 1.39288 * 120.05970 * 180.27481 * 14 12 11 24 24 H 0.97002 * 119.99875 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46892 * 60.00533 * 9 7 2 26 26 H 1.09003 * 109.47348 * 300.00140 * 9 7 2 27 27 H 1.08999 * 109.47012 * 60.00615 * 10 9 7 28 28 H 1.08995 * 109.46854 * 299.99741 * 10 9 7 29 29 H 0.96995 * 119.99960 * 0.02562 * 11 10 9 30 30 H 1.07998 * 119.93176 * 359.97013 * 15 14 12 31 31 H 1.08001 * 119.94297 * 180.02562 * 18 16 15 32 32 H 0.96700 * 117.00324 * 180.02562 * 22 20 19 33 33 H 1.08004 * 120.11632 * 0.02562 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5126 -4.9309 -0.0001 12 6 2.1865 -6.0981 -0.0007 13 8 3.4020 -6.0981 -0.0003 14 6 1.4472 -7.3785 -0.0008 15 6 0.0503 -7.3800 -0.0007 16 6 -0.6427 -8.5767 -0.0013 17 9 -1.9937 -8.5720 -0.0017 18 6 0.0422 -9.7784 -0.0025 19 6 1.4391 -9.7889 -0.0025 20 6 2.1695 -11.0731 -0.0044 21 8 3.3842 -11.0810 -0.0040 22 8 1.4885 -12.2354 -0.0065 23 6 2.1423 -8.5855 0.0044 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6239 -2.5568 0.8903 27 1 2.8718 -3.6044 0.8906 28 1 2.8718 -3.6044 -0.8894 29 1 0.5427 -4.9308 -0.0008 30 1 -0.4896 -6.4446 -0.0001 31 1 -0.5040 -10.7101 -0.0033 32 1 2.0100 -13.0498 -0.0073 33 1 3.2223 -8.5889 0.0088 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608181836.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:44 Heat of formation + Delta-G solvation = -178.690372 kcal Electronic energy + Delta-G solvation = -20409.657316 eV Core-core repulsion = 16734.540927 eV Total energy + Delta-G solvation = -3675.116389 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.05095 -41.74907 -40.96128 -39.13542 -37.17887 -36.70887 -34.93245 -33.26209 -31.88262 -31.30314 -27.12361 -26.20396 -24.98075 -22.89610 -22.69331 -21.65218 -19.68732 -19.09689 -18.56378 -17.91824 -17.45046 -17.12289 -17.01254 -16.96448 -16.59423 -16.47081 -16.42931 -16.35983 -15.00683 -14.95594 -14.60531 -14.30507 -14.24313 -13.46249 -13.29273 -13.14792 -13.06924 -12.92731 -12.64535 -12.55184 -12.25033 -11.94473 -11.71873 -11.49177 -11.11044 -10.61271 -10.56727 -10.17327 -10.02315 -8.23879 -6.33962 -0.81972 -0.40335 1.06685 1.42872 1.44596 1.52485 1.73680 1.76144 2.11945 2.43156 2.47915 2.84657 3.11331 3.34480 3.56162 3.73624 3.78021 4.00139 4.34898 4.40304 4.47507 4.48384 4.63101 4.84112 4.84840 4.95463 5.17641 5.39454 5.46404 5.48381 5.58005 5.77980 6.15538 6.45134 6.78869 6.87179 7.06711 7.35325 8.87667 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.030660 B = 0.003084 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.018051 B = 9076.532084 C = 9969.099974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.022 3.978 10 C 0.139 3.861 11 N -0.707 5.707 12 C 0.552 3.448 13 O -0.576 6.576 14 C -0.118 4.118 15 C -0.077 4.077 16 C 0.088 3.912 17 F -0.127 7.127 18 C -0.051 4.051 19 C -0.111 4.111 20 C 0.541 3.459 21 O -0.539 6.539 22 O -0.495 6.495 23 C -0.014 4.014 24 H 0.266 0.734 25 H 0.011 0.989 26 H 0.011 0.989 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.411 0.589 30 H 0.164 0.836 31 H 0.186 0.814 32 H 0.439 0.561 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.123 -23.814 -0.001 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.078 0.922 9 C -0.016 4.016 10 C 0.015 3.985 11 N -0.357 5.357 12 C 0.339 3.661 13 O -0.457 6.457 14 C -0.121 4.121 15 C -0.096 4.096 16 C 0.069 3.931 17 F -0.105 7.105 18 C -0.070 4.070 19 C -0.112 4.112 20 C 0.386 3.614 21 O -0.431 6.431 22 O -0.309 6.309 23 C -0.034 4.034 24 H 0.075 0.925 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.249 0.751 30 H 0.182 0.818 31 H 0.203 0.797 32 H 0.302 0.698 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.386 -23.323 0.000 23.568 hybrid contribution 0.130 0.681 -0.001 0.693 sum -3.256 -22.642 -0.001 22.875 Atomic orbital electron populations 1.70039 1.07475 1.28070 1.50914 1.25837 0.95776 1.02992 0.94431 0.85531 0.78329 0.78291 0.79102 1.19400 1.20660 1.19391 1.21443 0.93646 0.91914 1.51652 0.92230 1.19150 0.94237 0.91563 0.96625 1.21341 0.95150 0.81548 1.00423 1.46053 1.11233 1.05476 1.72974 1.18431 0.86947 0.84276 0.76402 1.90773 1.14944 1.88010 1.51943 1.19430 0.93117 0.92691 1.06845 1.21772 0.92921 0.99655 0.95247 1.17244 0.77585 0.93627 1.04639 1.91587 1.27726 1.97254 1.93954 1.21815 0.92701 0.99152 0.93326 1.18669 0.93102 0.90322 1.09116 1.20431 0.84690 0.84822 0.71483 1.90949 1.16354 1.88487 1.47292 1.84473 1.44701 1.16963 1.84809 1.21337 1.01568 0.89661 0.90795 0.92526 0.97038 0.97027 0.92950 0.92963 0.75147 0.81814 0.79675 0.69776 0.84152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.34 13.29 21.45 0.28 -53.05 16 2 C 0.01 0.48 5.46 84.66 0.46 0.94 16 3 Si 0.96 43.03 29.54 68.60 2.03 45.06 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -29.99 9.11 25.60 0.23 -29.75 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.02 1.06 5.09 29.85 0.15 1.21 16 10 C 0.14 5.73 5.61 86.38 0.48 6.22 16 11 N -0.71 -23.34 5.51 -465.94 -2.57 -25.90 16 12 C 0.55 18.18 7.77 86.79 0.67 18.85 16 13 O -0.58 -23.53 16.34 -3.89 -0.06 -23.60 16 14 C -0.12 -2.88 5.87 -20.13 -0.12 -3.00 16 15 C -0.08 -1.44 9.51 22.63 0.22 -1.22 16 16 C 0.09 1.42 7.28 22.30 0.16 1.58 16 17 F -0.13 -2.11 17.26 44.97 0.78 -1.33 16 18 C -0.05 -0.70 9.59 22.64 0.22 -0.48 16 19 C -0.11 -2.00 5.87 -20.14 -0.12 -2.12 16 20 C 0.54 9.43 8.27 70.34 0.58 10.01 16 21 O -0.54 -13.52 17.12 19.94 0.34 -13.18 16 22 O -0.50 -4.40 12.67 -56.21 -0.71 -5.11 16 23 C -0.01 -0.34 9.13 22.80 0.21 -0.13 16 24 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 25 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.41 11.19 6.50 -92.71 -0.60 10.59 16 30 H 0.16 2.60 6.39 -2.91 -0.02 2.58 16 31 H 0.19 1.46 7.60 -2.91 -0.02 1.44 16 32 H 0.44 0.06 9.11 -74.06 -0.67 -0.62 16 33 H 0.14 3.87 7.23 -2.91 -0.02 3.85 16 Total: -1.00 -71.36 307.05 3.15 -68.20 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -0.09 Total: 6.80 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 3.16 Total: 2.11 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -2.28 Total: -78.96 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -0.43 Total: -41.88 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.78 Total: -1.33 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -71.36 3.15 -68.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181836.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.488 kcal (2) G-P(sol) polarization free energy of solvation -71.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds