Wall clock time and date at job start Tue Mar 31 2020 06:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46972 * 2 1 4 4 C 1.35970 * 116.99587 * 179.97438 * 3 2 1 5 5 C 1.38714 * 119.98833 * 359.73716 * 4 3 2 6 6 C 1.38089 * 120.01185 * 179.72231 * 5 4 3 7 7 C 1.38840 * 119.98585 * 0.56519 * 6 5 4 8 8 N 1.40112 * 120.01367 * 179.67976 * 7 6 5 9 9 C 1.34775 * 120.00275 * 213.32023 * 8 7 6 10 10 O 1.21301 * 119.99973 * 5.27795 * 9 8 7 11 11 C 1.50700 * 120.00232 * 185.27767 * 9 8 7 12 12 S 1.81004 * 109.47182 * 179.97438 * 11 9 8 13 13 C 1.76194 * 100.00229 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99504 * 0.02562 * 13 12 11 15 15 C 1.38790 * 120.00264 * 179.97438 * 13 12 11 16 16 N 1.31634 * 120.00039 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00162 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47224 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47495 * 120.00433 * 17 15 13 20 20 H 1.48502 * 109.47230 * 240.00020 * 17 15 13 21 21 C 1.38842 * 119.97207 * 359.70472 * 7 6 5 22 22 C 1.38091 * 119.98351 * 0.02562 * 21 7 6 23 23 H 1.08998 * 109.47507 * 59.99835 * 1 2 3 24 24 H 1.08999 * 109.47374 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47180 * 299.99351 * 1 2 3 26 26 H 1.09008 * 109.46762 * 240.00576 * 2 1 3 27 27 H 1.09000 * 109.47273 * 120.00648 * 2 1 3 28 28 H 1.08002 * 119.99095 * 359.97241 * 5 4 3 29 29 H 1.08002 * 120.00493 * 180.26637 * 6 5 4 30 30 H 0.97001 * 120.00241 * 33.32208 * 8 7 6 31 31 H 1.09000 * 109.46791 * 299.99555 * 11 9 8 32 32 H 1.09000 * 109.47180 * 60.00296 * 11 9 8 33 33 H 0.97003 * 119.99710 * 180.02562 * 16 15 13 34 34 H 1.07999 * 120.00747 * 179.97438 * 21 7 6 35 35 H 1.07997 * 119.99002 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5254 0.0005 5 6 4.1990 0.4251 0.0066 6 6 5.5681 0.6054 0.0013 7 6 6.0991 1.8882 0.0019 8 7 7.4881 2.0718 0.0033 9 6 8.0278 3.1270 0.6450 10 8 7.3218 3.8639 1.3009 11 6 9.5082 3.3915 0.5478 12 16 9.9219 4.8677 1.5101 13 6 11.6597 4.9395 1.2285 14 1 12.1378 4.1938 0.6106 15 6 12.4139 5.9548 1.7999 16 7 11.8311 6.8639 2.5526 17 14 14.2563 6.0313 1.5007 18 1 14.6632 4.9016 0.6269 19 1 14.5976 7.3167 0.8401 20 1 14.9728 5.9360 2.7980 21 6 5.2530 2.9891 0.0015 22 6 3.8841 2.8075 0.0011 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.7858 -0.5727 0.0113 29 1 6.2257 -0.2514 0.0017 30 1 8.0614 1.4395 -0.4575 31 1 10.0567 2.5356 0.9410 32 1 9.7812 3.5501 -0.4955 33 1 12.3583 7.5737 2.9516 34 1 5.6654 3.9873 0.0024 35 1 3.2259 3.6637 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031944565.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:42 Heat of formation + Delta-G solvation = -51.272610 kcal Electronic energy + Delta-G solvation = -18339.146363 eV Core-core repulsion = 15235.768399 eV Total energy + Delta-G solvation = -3103.377964 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.53181 -39.44538 -37.31676 -34.28426 -32.46143 -32.02654 -30.99674 -29.97926 -27.68008 -25.51458 -24.35759 -22.48002 -22.15050 -20.18966 -18.44482 -18.01922 -17.31331 -16.53307 -16.30885 -15.75319 -15.14932 -14.83394 -14.53273 -14.11578 -13.78859 -13.59054 -13.48860 -13.29692 -13.08857 -12.72740 -12.45986 -12.45087 -12.01695 -11.89093 -11.16404 -11.09089 -11.05554 -10.89469 -10.78883 -9.87364 -9.83516 -9.51150 -9.10419 -9.00681 -8.29007 -7.69339 -6.54669 -6.25041 -3.96272 1.28491 1.33401 2.90976 2.92532 3.06011 3.19852 3.26057 3.30395 3.62109 3.79118 4.16651 4.59649 4.60691 4.76608 4.80767 4.93068 4.98597 5.10456 5.15428 5.27335 5.38929 5.45583 5.52444 5.64861 5.69185 5.79579 5.92972 5.95290 6.06182 6.22853 6.34951 6.51306 6.89967 7.32741 7.53279 7.57139 8.32143 8.42862 9.20523 10.82416 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.068638 B = 0.002679 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.841307 B =10450.371577 C =10744.165059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.106 3.894 5 C -0.190 4.190 6 C -0.112 4.112 7 C 0.123 3.877 8 N -0.680 5.680 9 C 0.531 3.469 10 O -0.497 6.497 11 C -0.154 4.154 12 S -0.057 6.057 13 C -0.536 4.536 14 H 0.074 0.926 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.920 3.080 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.082 4.082 22 C -0.129 4.129 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.408 0.592 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.268 0.732 34 H 0.145 0.855 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.737 -15.815 -7.689 24.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.232 6.232 4 C 0.060 3.940 5 C -0.209 4.209 6 C -0.133 4.133 7 C 0.029 3.971 8 N -0.327 5.327 9 C 0.318 3.682 10 O -0.370 6.370 11 C -0.304 4.304 12 S 0.169 5.831 13 C -0.684 4.684 14 H 0.092 0.908 15 C -0.136 4.136 16 N -0.502 5.502 17 Si 0.746 3.254 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.206 1.206 21 C -0.102 4.102 22 C -0.148 4.148 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.244 0.756 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.163 0.837 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.980 -14.241 -6.481 23.835 hybrid contribution 2.436 -1.426 -1.112 3.034 sum -15.544 -15.667 -7.593 23.340 Atomic orbital electron populations 1.21772 0.92894 1.02715 1.03546 1.22740 0.95758 0.82326 1.01250 1.86076 1.19167 1.28887 1.89112 1.18928 0.82105 0.94113 0.98805 1.20945 0.93484 0.97927 1.08550 1.20651 0.94768 0.95480 1.02386 1.17703 0.83425 0.93468 1.02527 1.43658 1.04974 1.29075 1.54983 1.20525 0.90392 0.79588 0.77696 1.90721 1.62437 1.45829 1.37996 1.23542 0.93043 1.07322 1.06511 1.85427 1.08528 1.26346 1.62797 1.22896 0.92579 1.16034 1.36895 0.90789 1.25002 0.99519 0.94624 0.94482 1.70027 1.36212 1.13586 1.30383 0.86100 0.82908 0.78188 0.78193 1.19604 1.20537 1.20551 1.21093 0.91727 0.99556 0.97815 1.20335 0.94678 0.94854 1.04970 0.91554 0.90508 0.91497 0.92199 0.92151 0.85441 0.85526 0.75614 0.88907 0.88765 0.92179 0.83718 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.51 16 2 C 0.05 0.42 5.46 37.16 0.20 0.62 16 3 O -0.32 -3.63 10.14 -19.64 -0.20 -3.83 16 4 C 0.11 1.31 6.69 -39.23 -0.26 1.05 16 5 C -0.19 -2.07 9.03 -39.46 -0.36 -2.42 16 6 C -0.11 -1.28 9.96 -39.41 -0.39 -1.67 16 7 C 0.12 1.72 6.28 -83.63 -0.53 1.19 16 8 N -0.68 -9.39 5.35 -9.83 -0.05 -9.45 16 9 C 0.53 9.71 7.59 -10.99 -0.08 9.63 16 10 O -0.50 -10.96 13.55 5.54 0.08 -10.89 16 11 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 12 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 13 C -0.54 -15.05 9.50 30.94 0.29 -14.75 16 14 H 0.07 1.96 7.80 -52.48 -0.41 1.56 16 15 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 16 N -0.87 -25.93 13.22 55.49 0.73 -25.20 16 17 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C -0.08 -1.23 8.65 -39.41 -0.34 -1.57 16 22 C -0.13 -1.74 9.98 -39.46 -0.39 -2.13 16 23 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.39 7.67 -51.92 -0.40 -0.01 16 27 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 28 H 0.13 1.05 6.29 -52.49 -0.33 0.72 16 29 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.41 4.15 8.82 -40.82 -0.36 3.79 16 31 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 32 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 33 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.15 2.42 6.41 -52.49 -0.34 2.09 16 35 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 318.55 15.07 4.80 4.80 Total: -1.00 -34.02 318.55 -7.55 -41.58 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -4.33 Total: 1.89 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -1.35 Total: -11.36 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.68 Total: -34.64 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.12 Total: -14.71 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.02 -7.55 -41.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031944565.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.696 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds