Wall clock time and date at job start Tue Mar 31 2020 06:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47194 * 2 1 4 4 O 1.42903 * 109.47370 * 239.99644 * 2 1 3 5 5 C 1.53002 * 109.47164 * 119.99718 * 2 1 3 6 6 N 1.46501 * 109.47087 * 185.00226 * 5 2 1 7 7 C 1.34777 * 119.99715 * 179.97438 * 6 5 2 8 8 O 1.21615 * 120.00369 * 359.97438 * 7 6 5 9 9 C 1.47426 * 119.99962 * 179.97438 * 7 6 5 10 10 C 1.39682 * 120.21426 * 0.02562 * 9 7 6 11 11 C 1.37810 * 119.93892 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.38080 * 0.02562 * 11 10 9 13 13 C 1.37911 * 120.43979 * 359.97438 * 12 11 10 14 14 C 1.39109 * 120.04940 * 359.71815 * 13 12 11 15 15 S 1.76206 * 120.19250 * 180.27837 * 14 13 12 16 16 C 1.76203 * 99.99610 * 6.86894 * 15 14 13 17 17 H 1.08002 * 120.00222 * 5.66178 * 16 15 14 18 18 C 1.38802 * 119.99638 * 185.65425 * 16 15 14 19 19 N 1.31556 * 120.00313 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99931 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47121 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47062 * 120.00482 * 20 18 16 23 23 H 1.48502 * 109.47531 * 240.00732 * 20 18 16 24 24 H 1.09003 * 109.47370 * 300.00117 * 1 2 3 25 25 H 1.08995 * 109.47396 * 60.00720 * 1 2 3 26 26 H 1.09003 * 109.47429 * 180.02562 * 1 2 3 27 27 H 0.96703 * 113.99483 * 299.99817 * 4 2 1 28 28 H 1.09008 * 109.46913 * 304.99774 * 5 2 1 29 29 H 1.08992 * 109.47267 * 64.99734 * 5 2 1 30 30 H 0.96995 * 119.99897 * 359.97438 * 6 5 2 31 31 H 1.07995 * 120.03166 * 359.97438 * 10 9 7 32 32 H 1.07997 * 119.80665 * 179.97438 * 11 10 9 33 33 H 1.07999 * 119.77867 * 179.97438 * 12 11 10 34 34 H 1.07996 * 119.97448 * 180.02562 * 13 12 11 35 35 H 0.96998 * 119.99874 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 7 3.5000 -0.6178 1.3110 7 6 4.1729 -1.1824 2.3332 8 8 3.5681 -1.7774 3.2045 9 6 5.6422 -1.0789 2.3950 10 6 6.3414 -0.3961 1.3970 11 6 7.7149 -0.3032 1.4602 12 6 8.4095 -0.8847 2.5099 13 6 7.7350 -1.5625 3.5037 14 6 6.3481 -1.6618 3.4613 15 16 5.4820 -2.5207 4.7329 16 6 6.8101 -2.8396 5.8460 17 1 7.7888 -2.4263 5.6516 18 6 6.5984 -3.6218 6.9729 19 7 5.4064 -4.1255 7.2097 20 14 8.0062 -3.9593 8.1534 21 1 9.2348 -3.2832 7.6649 22 1 7.6581 -3.4398 9.5003 23 1 8.2448 -5.4228 8.2338 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.7210 -1.5953 -1.2327 28 1 1.6053 -0.2616 2.1370 29 1 1.7516 -1.7714 1.2057 30 1 3.9823 -0.1429 0.6163 31 1 5.8062 0.0579 0.5761 32 1 8.2534 0.2248 0.6871 33 1 9.4859 -0.8063 2.5495 34 1 8.2836 -2.0122 4.3181 35 1 5.2587 -4.6724 7.9970 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035203425.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:34 Heat of formation + Delta-G solvation = -66.114399 kcal Electronic energy + Delta-G solvation = -19103.560662 eV Core-core repulsion = 15999.539109 eV Total energy + Delta-G solvation = -3104.021552 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.57992 -38.04692 -37.18387 -34.05995 -32.74739 -31.54008 -30.35028 -30.24844 -26.40017 -25.81902 -23.01236 -22.08315 -21.71950 -20.02870 -18.28356 -17.33142 -16.58489 -16.22339 -15.83230 -15.28920 -15.09157 -14.44949 -14.40903 -13.99157 -13.80555 -13.62920 -13.00084 -12.91702 -12.69331 -12.47124 -12.18200 -11.78101 -11.58067 -11.22232 -11.21228 -11.08269 -10.90836 -10.40130 -10.29122 -9.79349 -9.63200 -9.49810 -8.78733 -8.71732 -8.31476 -8.05367 -6.52557 -6.45704 -4.16111 1.54800 2.03677 3.11057 3.12358 3.20763 3.41499 3.48727 3.53423 4.06736 4.18303 4.50330 4.55256 4.81681 4.91543 4.95407 5.14253 5.32078 5.37261 5.40504 5.47101 5.61833 5.73844 5.78799 5.90969 6.00692 6.13781 6.40333 6.61154 6.74639 6.87279 7.04507 7.14802 7.38726 7.45777 7.60574 7.92772 8.17245 8.80167 9.00750 10.57665 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022118 B = 0.004604 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.638376 B = 6080.110426 C = 7243.927746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.091 3.909 3 H 0.104 0.896 4 O -0.562 6.562 5 C 0.091 3.909 6 N -0.734 5.734 7 C 0.551 3.449 8 O -0.511 6.511 9 C -0.178 4.178 10 C -0.060 4.060 11 C -0.187 4.187 12 C -0.077 4.077 13 C -0.154 4.154 14 C -0.056 4.056 15 S 0.182 5.818 16 C -0.595 4.595 17 H 0.091 0.909 18 C 0.083 3.917 19 N -0.859 5.859 20 Si 0.919 3.081 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.378 0.622 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.398 0.602 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.139 0.861 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.177 7.596 -13.392 15.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.032 3.968 3 H 0.122 0.878 4 O -0.368 6.368 5 C -0.034 4.034 6 N -0.389 5.389 7 C 0.340 3.660 8 O -0.389 6.389 9 C -0.193 4.193 10 C -0.080 4.080 11 C -0.211 4.211 12 C -0.099 4.099 13 C -0.179 4.179 14 C -0.176 4.176 15 S 0.446 5.554 16 C -0.742 4.742 17 H 0.109 0.891 18 C -0.128 4.128 19 N -0.491 5.491 20 Si 0.745 3.255 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.225 0.775 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.234 0.766 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.156 0.844 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.809 7.098 -12.273 15.321 hybrid contribution 2.172 -0.149 0.381 2.210 sum -3.637 6.949 -11.891 14.245 Atomic orbital electron populations 1.22416 0.95446 1.03061 1.03111 1.22169 0.93566 0.96960 0.84137 0.87838 1.86574 1.77308 1.29369 1.43575 1.21990 0.81671 1.01277 0.98427 1.45737 1.06590 1.59097 1.27494 1.18338 0.87477 0.78874 0.81275 1.90783 1.69244 1.41436 1.37421 1.19110 0.91637 1.09163 0.99356 1.20919 0.94454 0.96438 0.96232 1.20643 0.93930 1.06127 1.00420 1.21090 0.98967 0.95924 0.93905 1.21435 0.93415 1.02465 1.00550 1.23090 0.97128 0.98435 0.98978 1.84754 1.08636 1.54362 1.07633 1.24102 1.00717 1.37925 1.11426 0.89091 1.25099 0.96697 0.93731 0.97252 1.69987 1.21237 1.30734 1.27167 0.86097 0.81127 0.78411 0.79885 1.19144 1.20239 1.20234 0.91126 0.91456 0.91898 0.77475 0.90773 0.91386 0.76629 0.87080 0.87045 0.87007 0.84366 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 9.53 37.15 0.35 -0.93 16 2 C 0.09 0.80 3.62 -26.73 -0.10 0.70 16 3 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 4 O -0.56 -5.33 13.29 -35.23 -0.47 -5.79 16 5 C 0.09 1.09 5.31 -4.04 -0.02 1.07 16 6 N -0.73 -10.58 5.45 -61.38 -0.33 -10.92 16 7 C 0.55 10.81 7.75 -12.52 -0.10 10.72 16 8 O -0.51 -12.04 13.77 5.26 0.07 -11.96 16 9 C -0.18 -3.57 5.89 -104.75 -0.62 -4.19 16 10 C -0.06 -0.98 9.53 -39.20 -0.37 -1.35 16 11 C -0.19 -2.93 10.02 -39.58 -0.40 -3.33 16 12 C -0.08 -1.33 10.03 -39.55 -0.40 -1.72 16 13 C -0.15 -3.25 9.22 -39.38 -0.36 -3.61 16 14 C -0.06 -1.31 6.15 -38.39 -0.24 -1.54 16 15 S 0.18 4.92 18.56 -107.50 -2.00 2.92 16 16 C -0.60 -16.51 9.00 30.94 0.28 -16.23 16 17 H 0.09 2.40 4.98 -52.49 -0.26 2.14 16 18 C 0.08 2.28 5.49 -17.46 -0.10 2.19 16 19 N -0.86 -24.83 13.22 55.49 0.73 -24.10 16 20 Si 0.92 20.74 29.55 -169.99 -5.02 15.72 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.38 2.54 9.05 45.56 0.41 2.95 16 28 H 0.07 0.94 8.14 -51.92 -0.42 0.51 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.40 4.87 6.50 -40.82 -0.27 4.60 16 31 H 0.11 1.40 6.40 -52.49 -0.34 1.07 16 32 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.14 3.04 5.04 -52.49 -0.26 2.78 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 311.95 15.07 4.70 4.70 Total: -1.00 -32.87 311.95 -7.61 -40.48 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -3.23 Total: 7.18 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -2.06 Total: -18.23 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.40 Total: -35.01 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.40 Total: -17.76 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -2.00 Total: 2.92 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.87 -7.61 -40.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035203425.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.636 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds