Wall clock time and date at job start Tue Mar 31 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46671 * 2 1 4 4 O 1.42899 * 109.47265 * 120.00217 * 2 1 3 5 5 C 1.52997 * 109.46926 * 240.00096 * 2 1 3 6 6 N 1.46497 * 109.47467 * 179.97438 * 5 2 1 7 7 C 1.34770 * 120.00541 * 180.02562 * 6 5 2 8 8 O 1.21609 * 120.00090 * 359.97438 * 7 6 5 9 9 C 1.47426 * 120.00338 * 180.02562 * 7 6 5 10 10 C 1.39674 * 120.21556 * 359.95430 * 9 7 6 11 11 C 1.37807 * 119.94090 * 179.97438 * 10 9 7 12 12 C 1.38658 * 120.38211 * 0.02762 * 11 10 9 13 13 C 1.37909 * 120.43495 * 0.02562 * 12 11 10 14 14 C 1.39117 * 120.05251 * 359.95695 * 13 12 11 15 15 S 1.76199 * 120.18881 * 180.02562 * 14 13 12 16 16 C 1.76204 * 99.99787 * 6.84709 * 15 14 13 17 17 H 1.08002 * 120.00676 * 5.64639 * 16 15 14 18 18 C 1.38808 * 119.99589 * 185.65232 * 16 15 14 19 19 N 1.31555 * 120.00428 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99707 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47150 * 60.00067 * 20 18 16 22 22 H 1.48510 * 109.46946 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47117 * 299.99665 * 20 18 16 24 24 H 1.08994 * 109.47352 * 59.99848 * 1 2 3 25 25 H 1.09002 * 109.46971 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46961 * 299.99312 * 1 2 3 27 27 H 0.96698 * 114.00109 * 299.99384 * 4 2 1 28 28 H 1.09008 * 109.46994 * 59.99789 * 5 2 1 29 29 H 1.09002 * 109.47404 * 299.99980 * 5 2 1 30 30 H 0.97006 * 119.99907 * 0.02562 * 6 5 2 31 31 H 1.08005 * 120.02970 * 0.04493 * 10 9 7 32 32 H 1.08004 * 119.80534 * 180.30175 * 11 10 9 33 33 H 1.07994 * 119.77880 * 179.97438 * 12 11 10 34 34 H 1.07999 * 119.96976 * 179.97438 * 13 12 11 35 35 H 0.96998 * 120.00247 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0400 -0.7212 -1.2492 6 7 3.5049 -0.7208 -1.2497 7 6 4.1788 -1.3038 -2.2608 8 8 3.5707 -1.8307 -3.1727 9 6 5.6530 -1.3038 -2.2609 10 6 6.3560 -0.7000 -1.2158 11 6 7.7341 -0.7038 -1.2214 12 6 8.4295 -1.3038 -2.2601 13 6 7.7513 -1.9035 -3.3003 14 6 6.3602 -1.9105 -3.3128 15 16 5.4899 -2.6763 -4.6398 16 6 6.8369 -3.4139 -5.5037 17 1 7.8325 -3.3744 -5.0869 18 6 6.6185 -4.0458 -6.7202 19 7 5.4060 -4.0935 -7.2284 20 14 8.0466 -4.8271 -7.6365 21 1 8.6605 -5.8813 -6.7898 22 1 7.5528 -5.4315 -8.9000 23 1 9.0618 -3.7892 -7.9485 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.7211 -0.2702 1.9979 28 1 1.6765 -0.2073 -2.1393 29 1 1.6766 -1.7489 -1.2493 30 1 3.9900 -0.3008 -0.5221 31 1 5.8201 -0.2316 -0.4035 32 1 8.2755 -0.2405 -0.4097 33 1 9.5095 -1.3007 -2.2548 34 1 8.3005 -2.3682 -4.1058 35 1 5.2535 -4.5347 -8.0787 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035203426.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:36 Heat of formation + Delta-G solvation = -64.039236 kcal Electronic energy + Delta-G solvation = -19092.992463 eV Core-core repulsion = 15989.060897 eV Total energy + Delta-G solvation = -3103.931566 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.50900 -37.96295 -37.16184 -34.12043 -32.72174 -31.59809 -30.31919 -30.22076 -26.41614 -25.79150 -22.99616 -21.96037 -21.45359 -19.98539 -18.15865 -17.68993 -17.14932 -15.90739 -15.77226 -15.15264 -14.94820 -14.56393 -14.33806 -13.92888 -13.72245 -13.44108 -12.94837 -12.82674 -12.62630 -12.60629 -12.21571 -11.78646 -11.54649 -11.21897 -11.15886 -11.10706 -10.90972 -10.30676 -10.29767 -9.78286 -9.60004 -9.45610 -8.72379 -8.67893 -8.28449 -8.02685 -6.49656 -6.42813 -4.13229 1.58187 2.06166 3.13202 3.16217 3.20209 3.44572 3.54369 3.58778 3.98946 4.09684 4.54007 4.64003 4.84425 4.89471 4.97940 5.16964 5.33722 5.40561 5.43125 5.51815 5.63976 5.77924 5.80991 5.92842 6.05672 6.16290 6.43019 6.63787 6.80631 6.90054 7.07101 7.17154 7.39469 7.47911 7.63077 7.98639 8.19021 8.85437 9.03097 10.60424 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022110 B = 0.004606 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.096986 B = 6077.832656 C = 7240.604104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.090 3.910 3 H 0.061 0.939 4 O -0.562 6.562 5 C 0.130 3.870 6 N -0.732 5.732 7 C 0.551 3.449 8 O -0.512 6.512 9 C -0.176 4.176 10 C -0.060 4.060 11 C -0.187 4.187 12 C -0.077 4.077 13 C -0.154 4.154 14 C -0.057 4.057 15 S 0.184 5.816 16 C -0.597 4.597 17 H 0.090 0.910 18 C 0.084 3.916 19 N -0.859 5.859 20 Si 0.919 3.081 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.270 1.270 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.376 0.624 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.398 0.602 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.139 0.861 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.197 9.445 14.525 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.030 3.970 3 H 0.078 0.922 4 O -0.368 6.368 5 C 0.005 3.995 6 N -0.387 5.387 7 C 0.340 3.660 8 O -0.389 6.389 9 C -0.191 4.191 10 C -0.080 4.080 11 C -0.212 4.212 12 C -0.099 4.099 13 C -0.179 4.179 14 C -0.177 4.177 15 S 0.448 5.552 16 C -0.743 4.743 17 H 0.108 0.892 18 C -0.127 4.127 19 N -0.491 5.491 20 Si 0.744 3.256 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.195 1.195 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.223 0.777 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.233 0.767 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.156 0.844 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.854 8.358 12.602 16.216 hybrid contribution 2.190 0.221 0.597 2.280 sum -3.665 8.580 13.199 16.163 Atomic orbital electron populations 1.22434 0.95551 1.03403 1.02767 1.22059 0.93475 0.95421 0.85998 0.92156 1.86612 1.76897 1.57525 1.15753 1.21297 0.81151 1.01612 0.95391 1.45691 1.06155 1.60878 1.25980 1.18320 0.87555 0.78378 0.81719 1.90779 1.69264 1.43776 1.35122 1.19114 0.91534 1.10100 0.98400 1.20907 0.94398 0.96789 0.95930 1.20632 0.93818 1.06402 1.00345 1.21080 0.98937 0.96136 0.93773 1.21428 0.93371 1.02866 1.00215 1.23092 0.97186 0.97605 0.99789 1.84761 1.07177 1.49513 1.13733 1.24030 0.98651 1.42018 1.09608 0.89209 1.25092 0.96780 0.94815 0.96031 1.69968 1.20422 1.39710 1.19026 0.86207 0.81181 0.79536 0.78675 1.19478 1.20569 1.19509 0.91120 0.91326 0.92045 0.77681 0.90294 0.90985 0.76723 0.87143 0.87092 0.87032 0.84391 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 9.53 37.16 0.35 -0.97 16 2 C 0.09 0.81 3.67 -26.73 -0.10 0.71 16 3 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 4 O -0.56 -5.34 13.06 -35.23 -0.46 -5.80 16 5 C 0.13 1.71 5.37 -4.04 -0.02 1.68 16 6 N -0.73 -11.20 5.40 -61.38 -0.33 -11.53 16 7 C 0.55 11.18 7.75 -12.52 -0.10 11.09 16 8 O -0.51 -12.37 13.77 5.27 0.07 -12.30 16 9 C -0.18 -3.62 5.89 -104.76 -0.62 -4.24 16 10 C -0.06 -1.00 9.53 -39.20 -0.37 -1.37 16 11 C -0.19 -2.98 10.02 -39.58 -0.40 -3.38 16 12 C -0.08 -1.35 10.03 -39.55 -0.40 -1.75 16 13 C -0.15 -3.28 9.22 -39.38 -0.36 -3.65 16 14 C -0.06 -1.33 6.14 -38.39 -0.24 -1.57 16 15 S 0.18 5.04 18.56 -107.50 -2.00 3.04 16 16 C -0.60 -16.71 9.00 30.94 0.28 -16.43 16 17 H 0.09 2.38 4.98 -52.49 -0.26 2.12 16 18 C 0.08 2.32 5.49 -17.46 -0.10 2.23 16 19 N -0.86 -25.03 13.22 55.49 0.73 -24.30 16 20 Si 0.92 20.89 29.55 -169.99 -5.02 15.86 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.38 1.82 9.08 45.56 0.41 2.23 16 28 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.40 5.10 6.38 -40.82 -0.26 4.84 16 31 H 0.11 1.42 6.40 -52.48 -0.34 1.09 16 32 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 33 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.14 3.06 5.04 -52.49 -0.26 2.79 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 311.68 15.07 4.70 4.70 Total: -1.00 -33.68 311.68 -7.60 -41.27 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -3.23 Total: 6.69 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -2.06 Total: -17.63 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.40 Total: -35.83 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.39 Total: -18.09 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 5.04 SS G_CDS: -2.00 Total: 3.04 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.68 -7.60 -41.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035203426.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.767 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds