Wall clock time and date at job start Tue Mar 31 2020 06:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47364 * 2 1 4 4 C 1.52997 * 109.47084 * 119.99675 * 2 1 3 5 5 O 1.42911 * 109.46999 * 54.99957 * 4 2 1 6 6 N 1.46499 * 109.47044 * 239.99748 * 2 1 3 7 7 C 1.34778 * 119.99867 * 85.00738 * 6 2 1 8 8 O 1.21609 * 119.99939 * 359.97438 * 7 6 2 9 9 C 1.47421 * 119.99900 * 180.02562 * 7 6 2 10 10 C 1.39681 * 120.21901 * 359.96940 * 9 7 6 11 11 C 1.37808 * 119.94286 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.37767 * 0.02562 * 11 10 9 13 13 C 1.37909 * 120.44334 * 359.97438 * 12 11 10 14 14 C 1.39109 * 120.04959 * 0.02562 * 13 12 11 15 15 S 1.76204 * 120.19269 * 179.97438 * 14 13 12 16 16 C 1.76202 * 99.99694 * 6.88400 * 15 14 13 17 17 H 1.07998 * 120.00125 * 5.65292 * 16 15 14 18 18 C 1.38802 * 119.99933 * 185.66292 * 16 15 14 19 19 N 1.31556 * 120.00301 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00198 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46703 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46908 * 119.99433 * 20 18 16 23 23 H 1.48498 * 109.47055 * 240.00027 * 20 18 16 24 24 H 1.09001 * 109.46695 * 59.99631 * 1 2 3 25 25 H 1.08990 * 109.47199 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47274 * 300.00450 * 1 2 3 27 27 H 1.09002 * 109.47488 * 174.99608 * 4 2 1 28 28 H 1.09001 * 109.47434 * 295.00247 * 4 2 1 29 29 H 0.96694 * 114.00148 * 179.97438 * 5 4 2 30 30 H 0.96999 * 120.00020 * 264.99893 * 6 2 1 31 31 H 1.08003 * 120.02265 * 0.02562 * 10 9 7 32 32 H 1.07998 * 119.80890 * 180.02562 * 11 10 9 33 33 H 1.08007 * 119.77710 * 180.27598 * 12 11 10 34 34 H 1.08005 * 119.97866 * 180.02562 * 13 12 11 35 35 H 0.96996 * 120.00217 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 1.4701 -2.0304 1.3095 6 7 2.0183 -0.6907 -1.1961 7 6 2.1472 -0.0183 -2.3571 8 8 1.8576 1.1616 -2.4118 9 6 2.6380 -0.7134 -3.5609 10 6 2.9715 -2.0686 -3.5033 11 6 3.4303 -2.7127 -4.6320 12 6 3.5640 -2.0229 -5.8273 13 6 3.2394 -0.6847 -5.9020 14 6 2.7746 -0.0166 -4.7738 15 16 2.3593 1.6933 -4.8647 16 6 2.5216 1.9557 -6.5996 17 1 2.7205 1.1212 -7.2556 18 6 2.3940 3.2349 -7.1229 19 7 2.1514 4.2514 -6.3239 20 14 2.5668 3.5132 -8.9621 21 1 2.8366 2.2174 -9.6355 22 1 1.3091 4.0960 -9.4948 23 1 3.6926 4.4472 -9.2177 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 3.1263 -0.7995 1.2056 28 1 1.7516 -0.1582 2.1370 29 1 1.7504 -2.5463 2.0777 30 1 2.2490 -1.6318 -1.1525 31 1 2.8698 -2.6112 -2.5750 32 1 3.6871 -3.7606 -4.5851 33 1 3.9203 -2.5384 -6.7070 34 1 3.3461 -0.1548 -6.8370 35 1 2.0618 5.1453 -6.6897 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035205073.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:53 Heat of formation + Delta-G solvation = -62.145744 kcal Electronic energy + Delta-G solvation = -19341.240117 eV Core-core repulsion = 16237.390659 eV Total energy + Delta-G solvation = -3103.849458 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.61179 -37.85304 -36.99481 -34.47935 -32.73191 -31.49634 -30.24052 -29.55840 -26.47253 -25.80323 -23.50535 -21.96610 -20.94747 -20.00206 -18.20203 -17.66361 -17.13094 -15.93241 -15.76427 -15.14638 -14.83402 -14.57878 -14.18998 -13.85672 -13.73851 -13.56580 -13.00874 -12.87322 -12.71519 -12.29554 -11.86107 -11.56405 -11.39445 -11.20156 -11.18627 -10.93708 -10.87620 -10.30384 -10.26558 -9.76788 -9.60647 -9.47015 -8.74547 -8.68938 -8.29851 -8.02375 -6.50552 -6.44157 -4.14309 1.57127 2.05317 3.12189 3.13466 3.21788 3.44242 3.53826 3.57643 4.08081 4.09216 4.53103 4.81869 4.96806 5.01301 5.16273 5.20154 5.36920 5.42159 5.54305 5.63401 5.64271 5.84919 5.97336 6.14227 6.18900 6.42154 6.45096 6.63236 6.85254 6.90539 7.06842 7.16493 7.37948 7.47368 7.62284 8.00462 8.18772 8.85324 9.02279 10.59177 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022281 B = 0.004960 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.356125 B = 5643.759366 C = 6747.526229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.146 3.854 3 H 0.098 0.902 4 C 0.068 3.932 5 O -0.569 6.569 6 N -0.730 5.730 7 C 0.552 3.448 8 O -0.511 6.511 9 C -0.177 4.177 10 C -0.060 4.060 11 C -0.187 4.187 12 C -0.077 4.077 13 C -0.154 4.154 14 C -0.056 4.056 15 S 0.183 5.817 16 C -0.595 4.595 17 H 0.091 0.909 18 C 0.083 3.917 19 N -0.859 5.859 20 Si 0.919 3.081 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.378 0.622 30 H 0.398 0.602 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.139 0.861 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.204 -11.905 11.860 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.041 3.959 3 H 0.116 0.884 4 C -0.010 4.010 5 O -0.374 6.374 6 N -0.385 5.385 7 C 0.341 3.659 8 O -0.389 6.389 9 C -0.192 4.192 10 C -0.081 4.081 11 C -0.212 4.212 12 C -0.099 4.099 13 C -0.179 4.179 14 C -0.176 4.176 15 S 0.447 5.553 16 C -0.742 4.742 17 H 0.109 0.891 18 C -0.128 4.128 19 N -0.491 5.491 20 Si 0.744 3.256 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.203 1.203 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.224 0.776 30 H 0.234 0.766 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.156 0.844 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.273 -9.398 12.060 15.292 hybrid contribution 0.911 -1.443 -1.539 2.298 sum 1.184 -10.841 10.521 15.153 Atomic orbital electron populations 1.22069 0.95005 1.02495 1.02146 1.20932 0.95008 0.96794 0.83120 0.88367 1.22520 0.96842 0.84071 0.97592 1.86510 1.72993 1.27342 1.50567 1.45857 1.69380 1.13998 1.09231 1.18337 0.77946 0.86653 0.82942 1.90773 1.49381 1.15183 1.83541 1.19133 1.12633 0.94256 0.93199 1.20919 0.96609 0.92929 0.97600 1.20634 1.07695 0.99331 0.93511 1.21083 0.97475 0.94277 0.97086 1.21435 1.02659 0.94717 0.99096 1.23094 0.96948 1.03441 0.94150 1.84754 1.70204 0.94062 1.06258 1.24102 1.57060 0.97130 0.95866 0.89120 1.25096 0.93196 0.94739 0.99737 1.69985 1.43309 1.00117 1.35716 0.86103 0.78222 0.78759 0.82473 1.19156 1.20240 1.20253 0.91805 0.91845 0.92384 0.92987 0.92356 0.77569 0.76643 0.87113 0.87094 0.87041 0.84381 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.29 37.16 0.35 -1.75 16 2 C 0.15 1.92 2.98 -67.93 -0.20 1.71 16 3 H 0.10 1.41 7.58 -51.93 -0.39 1.02 16 4 C 0.07 0.62 6.79 37.16 0.25 0.87 16 5 O -0.57 -4.97 12.51 -35.23 -0.44 -5.41 16 6 N -0.73 -10.99 5.01 -54.88 -0.27 -11.27 16 7 C 0.55 10.96 7.71 -12.52 -0.10 10.86 16 8 O -0.51 -12.05 13.43 5.27 0.07 -11.98 16 9 C -0.18 -3.59 5.89 -104.75 -0.62 -4.21 16 10 C -0.06 -0.99 9.53 -39.20 -0.37 -1.37 16 11 C -0.19 -2.96 10.02 -39.59 -0.40 -3.36 16 12 C -0.08 -1.35 10.02 -39.55 -0.40 -1.74 16 13 C -0.15 -3.28 9.22 -39.38 -0.36 -3.64 16 14 C -0.06 -1.31 6.15 -38.39 -0.24 -1.55 16 15 S 0.18 4.96 18.56 -107.50 -2.00 2.97 16 16 C -0.59 -16.57 9.00 30.94 0.28 -16.29 16 17 H 0.09 2.40 4.98 -52.49 -0.26 2.14 16 18 C 0.08 2.30 5.49 -17.46 -0.10 2.20 16 19 N -0.86 -24.91 13.22 55.49 0.73 -24.18 16 20 Si 0.92 20.83 29.55 -169.99 -5.02 15.81 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 0.83 7.56 -51.93 -0.39 0.44 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.38 1.53 9.12 45.56 0.42 1.95 16 30 H 0.40 5.16 6.41 -40.82 -0.26 4.90 16 31 H 0.11 1.43 6.40 -52.48 -0.34 1.09 16 32 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 34 H 0.14 3.06 5.04 -52.48 -0.26 2.79 16 35 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 309.78 15.07 4.67 4.67 Total: -1.00 -33.04 309.78 -7.33 -40.37 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -3.17 Total: 7.29 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -1.90 Total: -18.26 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.46 Total: -35.45 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.37 Total: -17.39 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -2.00 Total: 2.97 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.04 -7.33 -40.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035205073.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.777 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds