Wall clock time and date at job start Tue Mar 31 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46630 * 2 1 4 4 C 1.53001 * 109.46847 * 239.99726 * 2 1 3 5 5 O 1.42898 * 109.47160 * 304.99917 * 4 2 1 6 6 N 1.46496 * 109.47183 * 119.99869 * 2 1 3 7 7 C 1.34776 * 119.99989 * 274.99840 * 6 2 1 8 8 O 1.21613 * 120.00420 * 0.02562 * 7 6 2 9 9 C 1.47430 * 120.00064 * 179.97438 * 7 6 2 10 10 C 1.39682 * 120.21521 * 0.02562 * 9 7 6 11 11 C 1.37806 * 119.94010 * 179.97438 * 10 9 7 12 12 C 1.38661 * 120.37895 * 0.02562 * 11 10 9 13 13 C 1.37909 * 120.44182 * 359.97438 * 12 11 10 14 14 C 1.39120 * 120.04812 * 359.71671 * 13 12 11 15 15 S 1.76192 * 120.18889 * 180.27960 * 14 13 12 16 16 C 1.76202 * 100.00404 * 6.86799 * 15 14 13 17 17 H 1.08002 * 119.99614 * 5.66275 * 16 15 14 18 18 C 1.38799 * 120.00108 * 185.65961 * 16 15 14 19 19 N 1.31559 * 120.00356 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99963 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47010 * 89.99789 * 20 18 16 22 22 H 1.48502 * 109.47287 * 210.00032 * 20 18 16 23 23 H 1.48495 * 109.47166 * 330.00146 * 20 18 16 24 24 H 1.09001 * 109.47375 * 59.99931 * 1 2 3 25 25 H 1.09005 * 109.46906 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47044 * 299.99763 * 1 2 3 27 27 H 1.08995 * 109.46731 * 184.99527 * 4 2 1 28 28 H 1.09001 * 109.46971 * 65.00390 * 4 2 1 29 29 H 0.96705 * 113.99609 * 180.02562 * 5 4 2 30 30 H 0.96999 * 120.00202 * 94.99818 * 6 2 1 31 31 H 1.08001 * 120.02704 * 0.02562 * 10 9 7 32 32 H 1.08001 * 119.80984 * 179.97438 * 11 10 9 33 33 H 1.08006 * 119.78142 * 179.97438 * 12 11 10 34 34 H 1.07997 * 119.97838 * 180.02562 * 13 12 11 35 35 H 0.96994 * 119.99997 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.4702 -2.0304 -1.3093 6 7 2.0184 -0.6906 1.1961 7 6 2.1471 -0.0182 2.3571 8 8 1.8575 1.1617 2.4119 9 6 2.6380 -0.7133 3.5610 10 6 2.9715 -2.0685 3.5034 11 6 3.4303 -2.7124 4.6321 12 6 3.5631 -2.0229 5.8277 13 6 3.2384 -0.6846 5.9023 14 6 2.7796 -0.0151 4.7724 15 16 2.3707 1.6964 4.8617 16 6 2.9196 2.0573 6.4967 17 1 3.4418 1.3051 7.0693 18 6 2.6809 3.3083 7.0486 19 7 2.0453 4.2248 6.3509 20 14 3.2623 3.6907 8.7822 21 1 4.6370 4.2500 8.7312 22 1 2.3474 4.6816 9.4039 23 1 3.2646 2.4444 9.5897 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.1262 -0.7995 -1.2056 28 1 1.7516 -0.1584 -2.1370 29 1 1.7505 -2.5465 -2.0776 30 1 2.2490 -1.6317 1.1526 31 1 2.8706 -2.6109 2.5750 32 1 3.6872 -3.7604 4.5853 33 1 3.9232 -2.5372 6.7065 34 1 3.3451 -0.1547 6.8373 35 1 1.8789 5.0991 6.7365 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035205074.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:56 Heat of formation + Delta-G solvation = -62.146021 kcal Electronic energy + Delta-G solvation = -19339.645897 eV Core-core repulsion = 16235.796427 eV Total energy + Delta-G solvation = -3103.849470 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.61137 -37.85290 -36.99467 -34.47957 -32.73098 -31.49604 -30.23986 -29.55863 -26.47287 -25.80164 -23.50478 -21.96616 -20.94755 -20.00238 -18.20181 -17.66423 -17.12908 -15.93183 -15.76454 -15.14332 -14.83057 -14.58779 -14.19435 -13.84842 -13.73790 -13.56540 -12.99766 -12.88425 -12.71675 -12.30318 -11.85083 -11.56108 -11.39951 -11.19304 -11.17965 -10.94093 -10.89334 -10.30625 -10.26435 -9.77804 -9.59558 -9.47175 -8.74118 -8.69195 -8.29541 -8.02875 -6.50525 -6.43912 -4.14260 1.57173 2.05368 3.12100 3.14404 3.20964 3.44077 3.53330 3.58004 4.08156 4.09343 4.53149 4.81862 4.96922 5.01301 5.16307 5.20194 5.36921 5.42201 5.54288 5.63418 5.64171 5.84862 5.97269 6.14172 6.18790 6.42183 6.44811 6.63271 6.85251 6.90567 7.06834 7.16495 7.37886 7.47220 7.62326 8.00451 8.18424 8.85303 9.02291 10.59351 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.004953 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.483837 B = 5651.584017 C = 6755.923558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.146 3.854 3 H 0.099 0.901 4 C 0.068 3.932 5 O -0.569 6.569 6 N -0.730 5.730 7 C 0.552 3.448 8 O -0.512 6.512 9 C -0.177 4.177 10 C -0.060 4.060 11 C -0.187 4.187 12 C -0.077 4.077 13 C -0.154 4.154 14 C -0.057 4.057 15 S 0.184 5.816 16 C -0.596 4.596 17 H 0.091 0.909 18 C 0.083 3.917 19 N -0.859 5.859 20 Si 0.919 3.081 21 H -0.273 1.273 22 H -0.280 1.280 23 H -0.268 1.268 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.378 0.622 30 H 0.398 0.602 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.139 0.861 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.123 -11.912 -11.842 16.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.041 3.959 3 H 0.116 0.884 4 C -0.010 4.010 5 O -0.374 6.374 6 N -0.385 5.385 7 C 0.341 3.659 8 O -0.389 6.389 9 C -0.192 4.192 10 C -0.080 4.080 11 C -0.212 4.212 12 C -0.099 4.099 13 C -0.179 4.179 14 C -0.176 4.176 15 S 0.448 5.552 16 C -0.742 4.742 17 H 0.108 0.892 18 C -0.127 4.127 19 N -0.491 5.491 20 Si 0.744 3.256 21 H -0.199 1.199 22 H -0.205 1.205 23 H -0.192 1.192 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.224 0.776 30 H 0.234 0.766 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.156 0.844 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.046 -9.461 -11.982 15.267 hybrid contribution 1.339 -1.343 1.433 2.377 sum 1.293 -10.804 -10.549 15.155 Atomic orbital electron populations 1.22069 0.95008 1.02493 1.02136 1.20933 0.95005 0.96803 0.83120 0.88359 1.22516 0.96847 0.84073 0.97593 1.86510 1.72992 1.27338 1.50568 1.45853 1.69370 1.13965 1.09277 1.18340 0.78009 0.86617 0.82906 1.90774 1.49132 1.15164 1.83821 1.19131 1.12786 0.94370 0.92948 1.20918 0.96584 0.92947 0.97598 1.20635 1.07686 0.99332 0.93531 1.21084 0.97413 0.94319 0.97102 1.21435 1.02982 0.94561 0.98935 1.23095 0.97392 1.03141 0.94017 1.84754 1.64123 0.92902 1.13421 1.24062 1.43433 1.02473 1.04269 0.89179 1.25092 0.93665 0.94992 0.98995 1.69978 1.36773 1.04962 1.37408 0.86152 0.78828 0.78624 0.81964 1.19891 1.20490 1.19243 0.92379 0.91844 0.91820 0.92987 0.92359 0.77565 0.76640 0.87115 0.87096 0.87043 0.84388 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.29 37.16 0.35 -1.74 16 2 C 0.15 1.92 2.98 -67.93 -0.20 1.71 16 3 H 0.10 1.42 7.58 -51.93 -0.39 1.02 16 4 C 0.07 0.62 6.79 37.16 0.25 0.87 16 5 O -0.57 -4.97 12.51 -35.23 -0.44 -5.41 16 6 N -0.73 -10.99 5.01 -54.88 -0.27 -11.27 16 7 C 0.55 10.96 7.71 -12.52 -0.10 10.86 16 8 O -0.51 -12.05 13.43 5.27 0.07 -11.98 16 9 C -0.18 -3.60 5.89 -104.75 -0.62 -4.22 16 10 C -0.06 -0.99 9.53 -39.20 -0.37 -1.37 16 11 C -0.19 -2.97 10.02 -39.58 -0.40 -3.36 16 12 C -0.08 -1.34 10.02 -39.55 -0.40 -1.74 16 13 C -0.15 -3.28 9.22 -39.37 -0.36 -3.64 16 14 C -0.06 -1.32 6.14 -38.39 -0.24 -1.55 16 15 S 0.18 4.98 18.56 -107.50 -2.00 2.99 16 16 C -0.60 -16.58 9.00 30.94 0.28 -16.30 16 17 H 0.09 2.38 4.98 -52.49 -0.26 2.12 16 18 C 0.08 2.30 5.49 -17.46 -0.10 2.21 16 19 N -0.86 -24.92 13.22 55.49 0.73 -24.18 16 20 Si 0.92 20.81 29.55 -169.99 -5.02 15.79 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.83 7.56 -51.93 -0.39 0.44 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.38 1.53 9.12 45.56 0.42 1.95 16 30 H 0.40 5.16 6.41 -40.82 -0.26 4.90 16 31 H 0.11 1.43 6.40 -52.49 -0.34 1.09 16 32 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 34 H 0.14 3.05 5.04 -52.49 -0.26 2.79 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 309.78 15.07 4.67 4.67 Total: -1.00 -33.01 309.78 -7.33 -40.34 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -3.17 Total: 7.32 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -1.90 Total: -18.27 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.46 Total: -35.45 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.37 Total: -17.39 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 4.98 SS G_CDS: -2.00 Total: 2.99 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.01 -7.33 -40.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035205074.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.807 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds