Wall clock time and date at job start Tue Mar 31 2020 05:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38241 * 119.99683 * 2 1 4 4 C 1.38233 * 119.99852 * 179.72269 * 3 2 1 5 5 C 1.38237 * 119.99789 * 0.25790 * 4 3 2 6 6 S 1.76201 * 119.99538 * 180.02562 * 5 4 3 7 7 O 1.42107 * 106.40123 * 203.53959 * 6 5 4 8 8 O 1.42099 * 106.40657 * 336.46253 * 6 5 4 9 9 N 1.65599 * 107.21901 * 90.00377 * 6 5 4 10 10 C 1.36936 * 120.00059 * 270.00137 * 9 6 5 11 11 H 1.07992 * 120.00278 * 129.74142 * 10 9 6 12 12 C 1.38815 * 119.99702 * 309.74259 * 10 9 6 13 13 N 1.31621 * 119.99958 * 334.65792 * 12 10 9 14 14 Si 1.86796 * 120.00173 * 154.65907 * 12 10 9 15 15 H 1.48507 * 109.46813 * 60.00151 * 14 12 10 16 16 H 1.48502 * 109.47269 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47265 * 300.00064 * 14 12 10 18 18 C 1.46502 * 120.00198 * 89.99344 * 9 6 5 19 19 C 1.52999 * 117.50004 * 183.82810 * 18 9 6 20 20 C 1.53004 * 60.00177 * 252.51371 * 19 18 9 21 21 C 1.38230 * 120.00338 * 359.97438 * 5 4 3 22 22 C 1.38233 * 119.99873 * 0.02562 * 21 5 4 23 23 H 1.09004 * 109.46938 * 90.00343 * 1 2 3 24 24 H 1.08997 * 109.47234 * 209.99592 * 1 2 3 25 25 H 1.08995 * 109.47889 * 330.00210 * 1 2 3 26 26 H 1.07995 * 119.99753 * 359.97438 * 3 2 1 27 27 H 1.07996 * 119.99772 * 180.27695 * 4 3 2 28 28 H 0.97003 * 120.00097 * 175.07514 * 13 12 10 29 29 H 1.08993 * 115.55129 * 329.54079 * 18 9 6 30 30 H 1.09002 * 117.49582 * 0.02562 * 19 18 9 31 31 H 1.08996 * 117.50007 * 145.02501 * 19 18 9 32 32 H 1.08997 * 117.49840 * 252.51475 * 20 19 18 33 33 H 1.09005 * 117.51832 * 107.47680 * 20 19 18 34 34 H 1.08004 * 120.00312 * 180.02562 * 21 5 4 35 35 H 1.07997 * 120.00173 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2716 0.0001 0.0062 6 16 6.0336 0.0003 0.0143 7 8 6.4375 -1.2483 -0.5312 8 8 6.4374 1.2513 -0.5254 9 7 6.5166 -0.0035 1.5983 10 6 6.7161 1.1809 2.2560 11 1 6.2580 1.3473 3.2197 12 6 7.5073 2.1677 1.6840 13 7 8.4412 1.8414 0.8157 14 14 7.2467 3.9586 2.1465 15 1 7.4602 4.1290 3.6062 16 1 8.2115 4.8075 1.4022 17 1 5.8610 4.3632 1.7983 18 6 6.7302 -1.2738 2.2960 19 6 7.0886 -1.2120 3.7821 20 6 8.1538 -1.5977 2.7538 21 6 3.5806 -1.1970 0.0013 22 6 2.1982 -1.1971 -0.0044 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3635 0.8899 0.5138 26 1 1.6580 2.1324 -0.0004 27 1 4.1203 2.1326 0.0103 28 1 8.9457 2.5349 0.3625 29 1 6.1079 -2.1040 1.9622 30 1 7.1650 -0.2262 4.2408 31 1 6.7018 -2.0016 4.4264 32 1 8.4677 -2.6409 2.7214 33 1 8.9314 -0.8656 2.5354 34 1 4.1206 -2.1324 0.0021 35 1 1.6583 -2.1324 -0.0078 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057538191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:23 Heat of formation + Delta-G solvation = -15.382080 kcal Electronic energy + Delta-G solvation = -20552.794129 eV Core-core repulsion = 17450.972495 eV Total energy + Delta-G solvation = -3101.821634 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.78366 -37.07069 -35.66903 -34.15030 -33.21882 -32.55488 -30.62885 -30.54903 -26.83796 -24.91691 -22.33448 -21.50361 -21.32622 -20.52934 -18.79807 -17.56812 -16.22379 -15.96774 -15.24149 -15.01288 -14.84142 -14.17463 -13.94359 -13.70446 -13.64234 -13.24733 -13.07306 -12.28804 -12.18672 -12.01356 -11.78566 -11.48572 -11.37645 -10.97094 -10.74324 -10.70155 -10.55338 -10.42405 -10.35490 -10.25512 -9.89703 -9.62097 -9.36220 -8.69177 -8.57150 -8.53627 -7.48900 -6.50062 -4.18185 1.36243 1.77273 1.97738 3.22802 3.29338 3.29683 3.92146 4.17024 4.61433 4.80775 4.94242 5.00169 5.04265 5.31147 5.34754 5.42983 5.57107 5.73395 5.79715 5.82926 5.84411 5.92581 6.00245 6.16277 6.25234 6.29409 6.45076 6.50835 6.62780 6.80013 6.83540 6.89623 7.15542 7.35863 7.42019 7.57529 8.23753 8.91209 9.33834 10.54597 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016969 B = 0.008045 C = 0.006692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.634635 B = 3479.558271 C = 4182.967335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.061 4.061 3 C -0.149 4.149 4 C -0.017 4.017 5 C -0.664 4.664 6 S 2.579 3.421 7 O -1.008 7.008 8 O -0.946 6.946 9 N -0.791 5.791 10 C -0.289 4.289 11 H 0.083 0.917 12 C 0.065 3.935 13 N -0.781 5.781 14 Si 0.916 3.084 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.268 1.268 18 C 0.098 3.902 19 C -0.182 4.182 20 C -0.188 4.188 21 C -0.033 4.033 22 C -0.151 4.151 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.121 0.879 27 H 0.135 0.865 28 H 0.280 0.720 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.577 -2.631 2.452 10.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.062 4.062 3 C -0.168 4.168 4 C -0.036 4.036 5 C -0.742 4.742 6 S 2.677 3.323 7 O -0.998 6.998 8 O -0.935 6.935 9 N -0.613 5.613 10 C -0.434 4.434 11 H 0.100 0.900 12 C -0.153 4.153 13 N -0.416 5.416 14 Si 0.742 3.258 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.193 1.193 18 C -0.011 4.011 19 C -0.221 4.221 20 C -0.228 4.228 21 C -0.052 4.052 22 C -0.169 4.169 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.139 0.861 27 H 0.153 0.847 28 H 0.090 0.910 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.147 0.853 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.055 -2.708 1.405 9.556 hybrid contribution -0.880 0.831 0.248 1.236 sum -9.936 -1.877 1.653 10.245 Atomic orbital electron populations 1.20822 0.91500 1.02645 1.02159 1.20022 0.95665 0.93551 0.96930 1.21126 0.94653 0.97263 1.03753 1.20939 0.93837 0.97483 0.91319 1.32535 1.32699 0.97752 1.11182 1.09385 0.73403 0.73084 0.76399 1.93328 1.81626 1.45625 1.79183 1.93423 1.79240 1.43022 1.77811 1.52321 1.70905 1.07265 1.30852 1.18917 1.27005 0.91940 1.05587 0.89986 1.25660 0.92032 1.01219 0.96401 1.69902 1.13891 1.36080 1.21707 0.86181 0.79054 0.82325 0.78274 1.19806 1.20672 1.19309 1.21201 0.97588 0.87881 0.94398 1.23138 1.04161 1.02762 0.92017 1.23205 0.94468 1.00765 1.04353 1.20877 0.94066 0.97078 0.93159 1.21054 0.94512 0.97230 1.04122 0.91222 0.91595 0.91538 0.86147 0.84678 0.90957 0.87723 0.87647 0.90228 0.90103 0.87886 0.85337 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.01 36.00 0.36 -0.89 16 2 C -0.06 -0.94 5.88 -104.62 -0.62 -1.55 16 3 C -0.15 -2.50 9.70 -39.58 -0.38 -2.88 16 4 C -0.02 -0.34 9.52 -39.58 -0.38 -0.71 16 5 C -0.66 -14.30 5.97 -39.58 -0.24 -14.53 16 6 S 2.58 64.60 5.46 -107.50 -0.59 64.02 16 7 O -1.01 -26.82 16.51 -57.17 -0.94 -27.76 16 8 O -0.95 -26.22 13.50 -57.17 -0.77 -27.00 16 9 N -0.79 -19.07 3.03 -53.43 -0.16 -19.23 16 10 C -0.29 -7.13 7.92 -15.06 -0.12 -7.25 16 11 H 0.08 1.91 7.31 -52.49 -0.38 1.53 16 12 C 0.07 1.66 3.98 -17.43 -0.07 1.59 16 13 N -0.78 -21.37 11.76 55.49 0.65 -20.72 16 14 Si 0.92 19.90 29.63 -169.99 -5.04 14.86 16 15 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 18 C 0.10 2.07 6.02 -67.93 -0.41 1.66 16 19 C -0.18 -3.31 9.82 -26.73 -0.26 -3.57 16 20 C -0.19 -3.71 10.35 -26.73 -0.28 -3.99 16 21 C -0.03 -0.63 9.52 -39.59 -0.38 -1.00 16 22 C -0.15 -2.42 9.70 -39.58 -0.38 -2.80 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 25 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 26 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 27 H 0.14 2.75 7.62 -52.49 -0.40 2.35 16 28 H 0.28 7.31 8.32 -40.82 -0.34 6.97 16 29 H 0.11 2.02 8.09 -51.93 -0.42 1.60 16 30 H 0.11 2.02 6.70 -51.93 -0.35 1.67 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.10 2.29 8.14 -51.93 -0.42 1.87 16 34 H 0.13 2.32 7.62 -52.48 -0.40 1.92 16 35 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 310.12 15.07 4.67 4.67 Total: -1.00 -30.91 310.12 -9.79 -40.70 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.46 Total: 6.38 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: -3.15 Total: -35.93 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.49 Total: -39.95 kcal Atomic # 8 Polarization: -53.04 SS G_CDS: -1.72 Total: -54.76 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.04 Total: 14.86 kcal Atomic # 16 Polarization: 64.60 SS G_CDS: -0.59 Total: 64.02 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.91 -9.79 -40.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057538191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.319 kcal (2) G-P(sol) polarization free energy of solvation -30.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds