Wall clock time and date at job start Tue Mar 31 2020 05:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38250 * 120.00608 * 2 1 4 4 C 1.38210 * 120.00545 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99912 * 0.02562 * 4 3 2 6 6 C 1.38212 * 119.99528 * 359.76558 * 5 4 3 7 7 C 1.38217 * 119.99673 * 180.02562 * 2 1 3 8 8 S 1.76202 * 120.00030 * 359.97438 * 7 2 1 9 9 O 1.42101 * 106.39964 * 181.45958 * 8 7 2 10 10 O 1.42098 * 106.39966 * 48.53672 * 8 7 2 11 11 N 1.65600 * 107.21529 * 294.99754 * 8 7 2 12 12 C 1.36935 * 120.00223 * 90.00431 * 11 8 7 13 13 H 1.08000 * 119.99750 * 232.24491 * 12 11 8 14 14 C 1.38810 * 119.99944 * 52.23644 * 12 11 8 15 15 N 1.31618 * 120.00008 * 22.11763 * 14 12 11 16 16 Si 1.86800 * 119.99651 * 202.11495 * 14 12 11 17 17 H 1.48506 * 109.47233 * 270.00138 * 16 14 12 18 18 H 1.48493 * 109.47523 * 30.00103 * 16 14 12 19 19 H 1.48507 * 109.47152 * 150.00308 * 16 14 12 20 20 C 1.46505 * 119.99979 * 269.99670 * 11 8 7 21 21 C 1.52994 * 117.49722 * 183.43048 * 20 11 8 22 22 C 1.53003 * 117.49664 * 114.77102 * 20 11 8 23 23 H 1.09000 * 109.47431 * 269.98512 * 1 2 3 24 24 H 1.09005 * 109.46677 * 29.97919 * 1 2 3 25 25 H 1.08993 * 109.47223 * 149.97808 * 1 2 3 26 26 H 1.08007 * 119.99671 * 359.97438 * 3 2 1 27 27 H 1.08003 * 120.00493 * 180.02562 * 4 3 2 28 28 H 1.07997 * 120.00216 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.99970 * 180.25932 * 6 5 4 30 30 H 0.96999 * 119.99792 * 174.95505 * 15 14 12 31 31 H 1.08997 * 115.54918 * 329.10810 * 20 11 8 32 32 H 1.08995 * 117.50178 * 0.02562 * 21 20 11 33 33 H 1.09007 * 117.49403 * 145.02296 * 21 20 11 34 34 H 1.08999 * 117.50007 * 214.98135 * 22 20 11 35 35 H 1.08997 * 117.49884 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0002 0.0005 6 6 3.5805 -1.1971 0.0049 7 6 2.1980 -1.1970 -0.0005 8 16 1.3169 -2.7229 -0.0005 9 8 2.2964 -3.7518 0.0336 10 8 0.3342 -2.6188 -1.0217 11 7 0.4935 -2.8135 1.4334 12 6 -0.7779 -2.3134 1.5256 13 1 -1.0279 -1.6152 2.3107 14 6 -1.7454 -2.7038 0.6100 15 7 -1.6068 -3.8324 -0.0529 16 14 -3.2440 -1.6274 0.3186 17 1 -4.3266 -2.0219 1.2555 18 1 -2.8843 -0.2052 0.5488 19 1 -3.7127 -1.7994 -1.0800 20 6 1.1253 -3.4287 2.6033 21 6 0.2849 -3.5546 3.8755 22 6 1.4172 -2.5270 3.8045 23 1 -0.3634 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8897 -0.5141 26 1 1.6584 2.1326 -0.0004 27 1 4.1205 2.1325 0.0010 28 1 5.3517 -0.0003 0.0005 29 1 4.1204 -2.1324 0.0091 30 1 -2.3162 -4.1416 -0.6377 31 1 1.8361 -4.2266 2.3885 32 1 -0.7382 -3.1802 3.8420 33 1 0.4430 -4.4354 4.4980 34 1 2.3197 -2.7321 4.3802 35 1 1.1396 -1.4761 3.7241 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057538193.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:28 Heat of formation + Delta-G solvation = -7.202883 kcal Electronic energy + Delta-G solvation = -21258.156352 eV Core-core repulsion = 18156.689394 eV Total energy + Delta-G solvation = -3101.466957 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.67982 -37.16513 -35.84081 -34.19970 -33.34139 -32.15132 -30.62601 -30.54352 -26.38265 -24.85384 -22.52005 -21.58047 -21.06259 -20.54301 -18.83977 -17.38149 -16.22273 -16.01799 -15.39802 -14.98538 -14.83444 -14.21977 -13.93915 -13.81438 -13.31181 -13.03715 -12.67116 -12.35664 -11.82600 -11.75667 -11.59432 -11.39721 -11.33061 -10.98674 -10.82997 -10.65847 -10.62892 -10.45584 -10.33224 -10.14721 -9.94029 -9.35922 -9.32868 -8.75607 -8.64428 -8.21243 -7.52173 -6.54166 -4.19850 1.46188 1.82381 1.99274 3.15810 3.22997 3.26839 3.99736 4.09632 4.57701 4.71506 4.90032 5.20500 5.26260 5.31981 5.39833 5.72301 5.74133 5.78663 5.83128 5.86348 6.10048 6.22440 6.31250 6.32203 6.39738 6.46973 6.57553 6.72573 6.75493 6.79534 6.94829 6.99421 7.24397 7.36257 7.45878 7.53224 8.17606 8.86687 9.30787 10.51609 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016883 B = 0.009864 C = 0.008285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.077968 B = 2837.800438 C = 3378.673223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.028 3.972 3 C -0.157 4.157 4 C -0.087 4.087 5 C -0.162 4.162 6 C -0.034 4.034 7 C -0.668 4.668 8 S 2.582 3.418 9 O -1.014 7.014 10 O -0.944 6.944 11 N -0.790 5.790 12 C -0.287 4.287 13 H 0.081 0.919 14 C 0.065 3.935 15 N -0.781 5.781 16 Si 0.909 3.091 17 H -0.277 1.277 18 H -0.258 1.258 19 H -0.277 1.277 20 C 0.098 3.902 21 C -0.161 4.161 22 C -0.214 4.214 23 H 0.095 0.905 24 H 0.055 0.945 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.130 0.870 30 H 0.280 0.720 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.791 6.476 3.800 8.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.027 3.973 3 C -0.175 4.175 4 C -0.105 4.105 5 C -0.180 4.180 6 C -0.053 4.053 7 C -0.746 4.746 8 S 2.681 3.319 9 O -1.004 7.004 10 O -0.932 6.932 11 N -0.612 5.612 12 C -0.433 4.433 13 H 0.099 0.901 14 C -0.154 4.154 15 N -0.415 5.415 16 Si 0.734 3.266 17 H -0.203 1.203 18 H -0.182 1.182 19 H -0.202 1.202 20 C -0.011 4.011 21 C -0.200 4.200 22 C -0.254 4.254 23 H 0.114 0.886 24 H 0.074 0.926 25 H 0.139 0.861 26 H 0.137 0.863 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.148 0.852 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.040 5.808 2.766 7.596 hybrid contribution -0.199 1.300 -0.019 1.315 sum 3.840 7.108 2.747 8.533 Atomic orbital electron populations 1.21979 0.89992 1.05585 1.04982 1.19661 0.96430 0.91476 0.89754 1.21136 0.94296 0.97735 1.04353 1.21182 0.94447 0.97604 0.97245 1.21132 0.99404 0.92969 1.04542 1.20939 0.92939 0.98426 0.93009 1.32343 1.05962 1.23896 1.12361 1.09429 0.72052 0.73947 0.76479 1.93284 1.62991 1.56354 1.87725 1.93372 1.56978 1.85601 1.57259 1.52235 1.18899 1.65330 1.24750 1.18816 0.83567 1.24677 1.16241 0.90094 1.25721 0.98829 0.94820 0.96014 1.69806 1.32834 1.16890 1.22011 0.86248 0.80719 0.81267 0.78364 1.20252 1.18206 1.20156 1.21372 0.99612 0.97460 0.82638 1.23055 0.97599 0.99909 0.99461 1.23355 0.99733 0.97559 1.04731 0.88622 0.92569 0.86124 0.86289 0.86558 0.86407 0.85169 0.90929 0.86653 0.87338 0.89844 0.89870 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.42 7.50 36.00 0.27 -3.15 16 2 C 0.03 0.56 5.87 -104.63 -0.61 -0.05 16 3 C -0.16 -2.69 9.70 -39.59 -0.38 -3.08 16 4 C -0.09 -1.35 10.05 -39.58 -0.40 -1.75 16 5 C -0.16 -2.68 10.05 -39.58 -0.40 -3.08 16 6 C -0.03 -0.67 9.55 -39.58 -0.38 -1.05 16 7 C -0.67 -14.64 5.91 -39.58 -0.23 -14.88 16 8 S 2.58 64.48 4.95 -107.50 -0.53 63.95 16 9 O -1.01 -26.97 15.80 -57.17 -0.90 -27.87 16 10 O -0.94 -25.85 11.90 -57.17 -0.68 -26.53 16 11 N -0.79 -18.56 3.00 -53.43 -0.16 -18.72 16 12 C -0.29 -6.70 4.56 -15.06 -0.07 -6.77 16 13 H 0.08 1.77 7.39 -52.49 -0.39 1.38 16 14 C 0.06 1.58 3.42 -17.43 -0.06 1.52 16 15 N -0.78 -20.82 11.69 55.49 0.65 -20.18 16 16 Si 0.91 18.96 28.32 -169.99 -4.81 14.15 16 17 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 18 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 20 C 0.10 2.04 6.32 -67.93 -0.43 1.62 16 21 C -0.16 -2.87 9.83 -26.70 -0.26 -3.13 16 22 C -0.21 -3.71 10.36 -26.69 -0.28 -3.98 16 23 H 0.10 1.87 6.56 -51.93 -0.34 1.53 16 24 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 25 H 0.12 2.79 2.99 -51.93 -0.16 2.64 16 26 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 27 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 28 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.13 2.50 7.33 -52.49 -0.38 2.11 16 30 H 0.28 7.06 8.32 -40.82 -0.34 6.72 16 31 H 0.12 2.42 7.46 -51.93 -0.39 2.03 16 32 H 0.11 2.02 6.91 -51.93 -0.36 1.66 16 33 H 0.08 1.29 8.14 -51.92 -0.42 0.86 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 293.75 15.07 4.43 4.43 Total: -1.00 -29.67 293.75 -9.35 -39.03 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -4.11 Total: 9.54 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: -3.23 Total: -37.79 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.49 Total: -38.89 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -1.58 Total: -54.41 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.81 Total: 14.15 kcal Atomic # 16 Polarization: 64.48 SS G_CDS: -0.53 Total: 63.95 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.67 -9.35 -39.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057538193.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.823 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds