Wall clock time and date at job start Tue Mar 31 2020 06:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21314 * 120.00157 * 2 1 4 4 C 1.46644 * 119.99786 * 180.02562 * 2 1 3 5 5 C 1.40100 * 120.19900 * 359.97018 * 4 2 1 6 6 C 1.37541 * 119.90445 * 180.02562 * 5 4 2 7 7 C 1.38941 * 120.31320 * 0.02562 * 6 5 4 8 8 F 1.35104 * 119.80099 * 179.97438 * 7 6 5 9 9 C 1.38359 * 120.39852 * 359.97438 * 7 6 5 10 10 C 1.38544 * 120.08842 * 0.02562 * 9 7 6 11 11 O 1.35601 * 120.15451 * 180.26873 * 10 9 7 12 12 C 1.42895 * 117.00078 * 359.73200 * 11 10 9 13 13 C 1.50706 * 109.46949 * 179.97438 * 12 11 10 14 14 O 1.21292 * 119.99988 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99963 * 179.97438 * 13 12 11 16 16 C 1.37091 * 120.00255 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00137 * 0.02562 * 16 15 13 18 18 C 1.38958 * 120.00540 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99647 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00229 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46977 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46524 * 120.00674 * 20 18 16 23 23 H 1.48503 * 109.47124 * 240.00259 * 20 18 16 24 24 H 1.09006 * 109.46843 * 239.99241 * 1 2 3 25 25 H 1.09001 * 109.47158 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47564 * 119.99538 * 1 2 3 27 27 H 1.07996 * 120.04494 * 0.05044 * 5 4 2 28 28 H 1.08008 * 119.84188 * 180.02562 * 6 5 4 29 29 H 1.08006 * 119.95515 * 180.02562 * 9 7 6 30 30 H 1.08996 * 109.47078 * 299.99030 * 12 11 10 31 31 H 1.08999 * 109.47720 * 59.99587 * 12 11 10 32 32 H 0.97006 * 120.00271 * 0.02562 * 15 13 12 33 33 H 0.96991 * 120.00092 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2401 -1.2700 -0.0006 5 6 1.5438 -2.4857 -0.0005 6 6 2.2376 -3.6733 -0.0005 7 6 3.6270 -3.6738 0.0000 8 9 4.2980 -4.8464 0.0005 9 6 4.3275 -2.4807 -0.0001 10 6 3.6455 -1.2748 -0.0001 11 8 4.3307 -0.1047 -0.0057 12 6 5.7572 -0.1882 -0.0054 13 6 6.3417 1.2009 -0.0127 14 8 5.6087 2.1673 -0.0180 15 7 7.6789 1.3693 -0.0132 16 6 8.2107 2.6328 -0.0203 17 1 7.5581 3.4933 -0.0251 18 6 9.5893 2.8065 -0.0203 19 7 10.3835 1.7595 -0.0140 20 14 10.3139 4.5283 -0.0293 21 1 9.2154 5.5275 -0.0349 22 1 11.1504 4.7195 1.1828 23 1 11.1519 4.7064 -1.2423 24 1 -0.3633 -0.5140 0.8900 25 1 -0.3633 1.0277 0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 0.4638 -2.4903 -0.0008 28 1 1.6997 -4.6100 -0.0008 29 1 5.4075 -2.4894 -0.0002 30 1 6.0899 -0.7180 0.8871 31 1 6.0899 -0.7266 -0.8929 32 1 8.2651 0.5964 -0.0093 33 1 11.3458 1.8807 -0.0144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062748122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:49 Heat of formation + Delta-G solvation = -127.218545 kcal Electronic energy + Delta-G solvation = -21057.006952 eV Core-core repulsion = 17384.122550 eV Total energy + Delta-G solvation = -3672.884403 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.19926 -40.55280 -38.78094 -37.93665 -36.96886 -33.98791 -31.90423 -31.36553 -30.45312 -29.46618 -27.92743 -24.71742 -23.84920 -22.55133 -20.24557 -19.46568 -18.61586 -18.03574 -16.95107 -16.53225 -16.21482 -16.21326 -15.62731 -15.55124 -14.78759 -14.71168 -14.67100 -14.51056 -13.99197 -13.67260 -13.37621 -13.20584 -12.71130 -12.34301 -12.29608 -11.92707 -11.72662 -11.63450 -11.57229 -11.16902 -10.86220 -10.36779 -10.28432 -9.59132 -9.54211 -9.18117 -8.47296 -8.41954 -8.05454 -6.48378 -3.89702 0.44095 1.08432 2.37559 2.98764 3.13469 3.25641 3.34552 3.47787 3.75381 3.87668 4.07568 4.15862 4.41078 4.67767 4.83047 4.90465 5.00946 5.11000 5.13668 5.28532 5.30425 5.32178 5.58011 5.60209 5.75024 5.79803 5.87752 6.06155 6.13140 6.42622 7.30001 7.50463 7.76589 7.96526 8.51488 9.10250 9.41406 9.92498 10.69248 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022200 B = 0.004017 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.952789 B = 6969.555807 C = 8210.052218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.378 3.622 3 O -0.415 6.415 4 C -0.220 4.220 5 C -0.008 4.008 6 C -0.214 4.214 7 C 0.171 3.829 8 F -0.132 7.132 9 C -0.267 4.267 10 C 0.220 3.780 11 O -0.244 6.244 12 C 0.040 3.960 13 C 0.440 3.560 14 O -0.561 6.561 15 N -0.556 5.556 16 C -0.299 4.299 17 H 0.106 0.894 18 C 0.024 3.976 19 N -0.900 5.900 20 Si 0.932 3.068 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.147 0.853 28 H 0.141 0.859 29 H 0.149 0.851 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.393 0.607 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.708 -13.652 0.050 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.253 3.747 3 O -0.287 6.287 4 C -0.222 4.222 5 C -0.026 4.026 6 C -0.233 4.233 7 C 0.151 3.849 8 F -0.111 7.111 9 C -0.286 4.286 10 C 0.169 3.831 11 O -0.152 6.152 12 C -0.039 4.039 13 C 0.224 3.776 14 O -0.444 6.444 15 N -0.194 5.194 16 C -0.429 4.429 17 H 0.124 0.876 18 C -0.178 4.178 19 N -0.541 5.541 20 Si 0.759 3.241 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.107 0.893 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.165 0.835 28 H 0.158 0.842 29 H 0.167 0.833 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.227 0.773 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.703 -12.233 0.046 19.906 hybrid contribution 1.230 -0.435 0.002 1.304 sum -14.474 -12.668 0.048 19.234 Atomic orbital electron populations 1.22225 0.94063 1.05062 1.03915 1.22100 0.91280 0.87571 0.73797 1.90786 1.71443 1.33289 1.33162 1.20080 0.90642 0.96391 1.15065 1.21066 1.00107 0.89626 0.91804 1.20913 0.91906 0.99919 1.10570 1.17653 0.90058 0.80563 0.96589 1.91530 1.80733 1.45702 1.93119 1.21271 1.02000 0.90942 1.14422 1.19152 0.91002 0.85090 0.87830 1.86450 1.19233 1.24994 1.84558 1.22749 0.78615 1.00026 1.02516 1.19209 0.83622 0.88657 0.86076 1.90629 1.59016 1.40640 1.54077 1.41687 1.03769 1.09484 1.64462 1.19784 0.90616 0.84657 1.47799 0.87584 1.25289 0.95879 0.99602 0.97010 1.69614 1.04640 1.29643 1.50187 0.85750 0.78964 0.81601 0.77771 1.19067 1.20640 1.20635 0.89285 0.89749 0.89278 0.83526 0.84162 0.83300 0.89985 0.89989 0.77327 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 8.92 36.00 0.32 -1.33 16 2 C 0.38 5.34 7.21 -30.92 -0.22 5.11 16 3 O -0.41 -8.35 15.89 -16.41 -0.26 -8.61 16 4 C -0.22 -2.88 5.88 -104.94 -0.62 -3.50 16 5 C -0.01 -0.07 9.46 -39.14 -0.37 -0.44 16 6 C -0.21 -1.94 10.00 -39.58 -0.40 -2.33 16 7 C 0.17 1.94 7.30 -39.28 -0.29 1.66 16 8 F -0.13 -1.53 17.26 2.25 0.04 -1.49 16 9 C -0.27 -3.48 9.00 -39.42 -0.35 -3.83 16 10 C 0.22 3.41 6.70 -38.60 -0.26 3.15 16 11 O -0.24 -4.83 7.74 -48.78 -0.38 -5.21 16 12 C 0.04 0.74 5.22 36.01 0.19 0.93 16 13 C 0.44 10.89 7.86 -10.98 -0.09 10.80 16 14 O -0.56 -16.52 16.08 -14.36 -0.23 -16.75 16 15 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 16 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 17 H 0.11 3.14 7.16 -52.49 -0.38 2.77 16 18 C 0.02 0.64 5.50 -17.46 -0.10 0.55 16 19 N -0.90 -24.24 13.05 55.50 0.72 -23.51 16 20 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 24 H 0.09 0.53 8.08 -51.93 -0.42 0.11 16 25 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 26 H 0.09 0.53 8.08 -51.93 -0.42 0.11 16 27 H 0.15 0.73 7.04 -52.49 -0.37 0.36 16 28 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 29 H 0.15 1.78 6.29 -52.48 -0.33 1.45 16 30 H 0.08 1.29 7.67 -51.93 -0.40 0.89 16 31 H 0.08 1.29 7.65 -51.93 -0.40 0.89 16 32 H 0.39 9.35 7.90 -40.82 -0.32 9.02 16 33 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 303.28 15.07 4.57 4.57 Total: -1.00 -35.34 303.28 -5.95 -41.29 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -3.01 Total: 5.72 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -2.32 Total: 2.21 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.67 Total: -37.75 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.87 Total: -30.57 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.34 -5.95 -41.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062748122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.925 kcal (2) G-P(sol) polarization free energy of solvation -35.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds