Wall clock time and date at job start Tue Mar 31 2020 06:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47048 * 2 1 4 4 C 1.36939 * 120.00211 * 264.67669 * 3 2 1 5 5 H 1.07997 * 120.00275 * 145.39960 * 4 3 2 6 6 C 1.38961 * 119.99848 * 325.40237 * 4 3 2 7 7 N 1.31439 * 119.99970 * 338.61507 * 6 4 3 8 8 Si 1.86800 * 120.00268 * 158.61464 * 6 4 3 9 9 H 1.48501 * 109.46978 * 59.99643 * 8 6 4 10 10 H 1.48494 * 109.47552 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46861 * 300.00294 * 8 6 4 12 12 C 1.34780 * 119.99910 * 84.67508 * 3 2 1 13 13 O 1.21839 * 119.99699 * 179.97438 * 12 3 2 14 14 C 1.41167 * 119.99913 * 0.02562 * 12 3 2 15 15 C 1.35223 * 119.99676 * 180.02562 * 14 12 3 16 16 S 1.76193 * 119.99520 * 179.97438 * 15 14 12 17 17 C 1.80998 * 99.99926 * 179.97438 * 16 15 14 18 18 C 1.50705 * 109.47516 * 179.97438 * 17 16 15 19 19 C 1.34512 * 125.78802 * 89.71224 * 18 17 16 20 20 C 1.41377 * 106.84014 * 179.89266 * 19 18 17 21 21 C 1.34523 * 106.84260 * 0.37176 * 20 19 18 22 22 O 1.34299 * 125.78772 * 270.02892 * 18 17 16 23 23 H 1.08997 * 109.47230 * 59.99831 * 1 2 3 24 24 H 1.09004 * 109.47576 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47189 * 299.99696 * 1 2 3 26 26 H 1.09003 * 109.46552 * 239.99914 * 2 1 3 27 27 H 1.08997 * 109.47230 * 120.00169 * 2 1 3 28 28 H 0.96997 * 119.99692 * 180.02562 * 7 6 4 29 29 H 1.07996 * 119.99898 * 359.97438 * 14 12 3 30 30 H 1.07997 * 119.99680 * 359.97438 * 15 14 12 31 31 H 1.09005 * 109.47080 * 59.99956 * 17 16 15 32 32 H 1.08999 * 109.47289 * 300.00271 * 17 16 15 33 33 H 1.08003 * 126.57837 * 0.03149 * 19 18 17 34 34 H 1.08001 * 126.58340 * 180.16626 * 20 19 18 35 35 H 1.07995 * 125.79299 * 179.74802 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3503 1.9901 -1.1808 5 1 2.1712 3.0470 -1.3124 6 6 2.9176 1.2481 -2.2097 7 7 3.5174 0.1089 -1.9450 8 14 2.8277 1.8696 -3.9690 9 1 3.5034 3.1886 -4.0631 10 1 3.5032 0.9024 -4.8708 11 1 1.4054 2.0122 -4.3714 12 6 2.1408 2.0526 1.1622 13 8 2.5474 3.2012 1.1622 14 6 1.7991 1.4248 2.3795 15 6 1.9215 2.0987 3.5454 16 16 1.4943 1.3152 5.0647 17 6 1.8547 2.6584 6.2232 18 6 1.5544 2.2040 7.6284 19 6 2.4203 1.5995 8.4615 20 6 1.7244 1.3532 9.6673 21 6 0.4724 1.8144 9.4959 22 8 0.3753 2.3286 8.2590 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.9137 -0.4088 -2.6632 29 1 1.4391 0.4066 2.3794 30 1 2.2811 3.1170 3.5453 31 1 1.2360 3.5226 5.9812 32 1 2.9070 2.9319 6.1464 33 1 3.4503 1.3521 8.2507 34 1 2.1208 0.8818 10.5545 35 1 -0.3202 1.7771 10.2285 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084970864.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:21 Heat of formation + Delta-G solvation = 8.877015 kcal Electronic energy + Delta-G solvation = -18571.746027 eV Core-core repulsion = 15470.976347 eV Total energy + Delta-G solvation = -3100.769680 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.77548 -38.74383 -35.11258 -33.42424 -32.49375 -32.18714 -31.63868 -29.47125 -27.02954 -25.62292 -23.00538 -21.99421 -21.94892 -20.77147 -18.52169 -17.47148 -17.16784 -16.64499 -16.49925 -15.46227 -15.09312 -14.89713 -14.37904 -14.08794 -13.81417 -13.32089 -13.08252 -13.03259 -12.88250 -12.75250 -12.22885 -12.05107 -11.72933 -11.71145 -11.08472 -10.98489 -10.49637 -10.42135 -10.26512 -10.13199 -10.09147 -10.01674 -8.98515 -8.69429 -8.44012 -7.56691 -7.28630 -6.40125 -3.96310 1.03803 1.75815 1.94741 2.40600 2.55966 2.74487 3.19021 3.22591 3.26633 4.11902 4.31584 4.42220 4.68420 4.79289 4.96444 4.97290 5.10895 5.18623 5.52347 5.55960 5.68447 5.82454 5.90692 6.07031 6.23225 6.23973 6.31150 6.51246 6.53893 6.69019 6.87964 6.88878 7.25197 7.53106 8.20952 8.48287 9.15265 9.35731 9.99967 10.62151 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.046363 B = 0.002988 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.783895 B = 9369.004570 C = 9550.792228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.091 3.909 3 N -0.423 5.423 4 C -0.301 4.301 5 H 0.095 0.905 6 C 0.035 3.965 7 N -0.862 5.862 8 Si 0.922 3.078 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.272 1.272 12 C 0.478 3.522 13 O -0.596 6.596 14 C -0.142 4.142 15 C -0.134 4.134 16 S -0.110 6.110 17 C -0.034 4.034 18 C -0.001 4.001 19 C -0.187 4.187 20 C -0.215 4.215 21 C -0.034 4.034 22 O -0.171 6.171 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.044 0.956 26 H 0.114 0.886 27 H 0.051 0.949 28 H 0.271 0.729 29 H 0.121 0.879 30 H 0.142 0.858 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.067 -1.348 17.599 18.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.033 4.033 3 N -0.140 5.140 4 C -0.430 4.430 5 H 0.113 0.887 6 C -0.170 4.170 7 N -0.500 5.500 8 Si 0.748 3.252 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.197 1.197 12 C 0.268 3.732 13 O -0.483 6.483 14 C -0.174 4.174 15 C -0.269 4.269 16 S 0.132 5.868 17 C -0.181 4.181 18 C -0.052 4.052 19 C -0.209 4.209 20 C -0.234 4.234 21 C -0.103 4.103 22 O -0.067 6.067 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.132 0.868 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.159 0.841 31 H 0.125 0.875 32 H 0.136 0.864 33 H 0.170 0.830 34 H 0.168 0.832 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.431 -1.897 17.587 18.504 hybrid contribution 0.611 1.129 -0.947 1.595 sum -4.821 -0.767 16.640 17.341 Atomic orbital electron populations 1.22227 0.97888 1.00488 1.01702 1.21684 0.91953 0.85360 1.04270 1.43575 1.53474 1.11728 1.05189 1.19499 1.38505 0.95912 0.89062 0.88734 1.25425 0.94380 0.96410 1.00801 1.69916 1.31651 1.15006 1.33419 0.86070 0.78733 0.78852 0.81559 1.19596 1.20857 1.19742 1.16760 0.84497 0.88091 0.83859 1.90653 1.51954 1.18552 1.87170 1.21923 1.01799 1.00404 0.93271 1.25358 1.04261 1.02792 0.94491 1.85894 1.82949 1.20164 0.97765 1.21907 1.06391 1.00537 0.89271 1.21410 0.84271 1.05085 0.94460 1.21655 1.01474 1.03891 0.93872 1.21856 0.94557 1.06938 1.00087 1.24095 0.99583 1.01138 0.85502 1.84030 1.33960 1.63771 1.24895 0.92399 0.92966 0.93696 0.86797 0.93071 0.91910 0.86152 0.84052 0.87541 0.86372 0.83004 0.83223 0.77908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 10.07 37.16 0.37 -2.68 16 2 C 0.09 2.02 5.28 -4.04 -0.02 2.00 16 3 N -0.42 -10.96 2.55 -118.18 -0.30 -11.26 16 4 C -0.30 -8.40 8.96 -15.00 -0.13 -8.53 16 5 H 0.10 2.75 7.71 -52.49 -0.40 2.34 16 6 C 0.03 0.91 4.94 -17.45 -0.09 0.83 16 7 N -0.86 -23.03 11.33 55.50 0.63 -22.40 16 8 Si 0.92 20.36 29.60 -169.99 -5.03 15.33 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 12 C 0.48 12.19 7.35 -15.15 -0.11 12.08 16 13 O -0.60 -17.14 15.93 5.06 0.08 -17.06 16 14 C -0.14 -2.92 8.30 -39.54 -0.33 -3.25 16 15 C -0.13 -2.41 9.53 29.66 0.28 -2.13 16 16 S -0.11 -1.59 22.02 -107.50 -2.37 -3.96 16 17 C -0.03 -0.39 6.20 36.01 0.22 -0.17 16 18 C 0.00 -0.01 6.58 -35.62 -0.23 -0.25 16 19 C -0.19 -1.96 10.81 -39.71 -0.43 -2.39 16 20 C -0.22 -1.94 10.91 -39.70 -0.43 -2.37 16 21 C -0.03 -0.30 12.09 29.42 0.36 0.06 16 22 O -0.17 -1.99 10.65 5.71 0.06 -1.93 16 23 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.80 7.53 -51.93 -0.39 0.41 16 26 H 0.11 2.74 5.36 -51.93 -0.28 2.46 16 27 H 0.05 1.05 6.39 -51.93 -0.33 0.72 16 28 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16 29 H 0.12 2.26 5.97 -52.49 -0.31 1.95 16 30 H 0.14 2.59 7.41 -52.49 -0.39 2.21 16 31 H 0.11 1.15 8.14 -51.91 -0.42 0.72 16 32 H 0.12 1.18 8.14 -51.92 -0.42 0.76 16 33 H 0.15 1.37 8.06 -52.48 -0.42 0.95 16 34 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.20 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 319.84 15.07 4.82 4.82 Total: -1.00 -32.11 319.84 -6.86 -38.96 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.20 Total: 4.29 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -0.54 Total: -6.80 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.33 Total: -33.67 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.14 Total: -18.99 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.37 Total: -3.96 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.11 -6.86 -38.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084970864.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.840 kcal (2) G-P(sol) polarization free energy of solvation -32.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds