Wall clock time and date at job start Tue Mar 31 2020 05:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29027 * 124.91494 * 2 1 4 4 C 1.31781 * 117.12476 * 179.97438 * 3 2 1 5 5 C 1.50696 * 122.75352 * 179.97438 * 4 3 2 6 6 C 1.50708 * 109.46883 * 305.02708 * 5 4 3 7 7 O 1.20826 * 119.99995 * 4.00187 * 6 5 4 8 8 O 1.34233 * 119.99901 * 184.00757 * 6 5 4 9 9 C 1.45193 * 116.99888 * 185.06786 * 8 6 5 10 10 C 1.52999 * 109.47242 * 184.14152 * 9 8 6 11 11 C 1.50703 * 115.54831 * 294.96428 * 10 9 8 12 12 H 1.08005 * 119.99734 * 114.86751 * 11 10 9 13 13 C 1.37877 * 119.99908 * 294.58891 * 11 10 9 14 14 N 1.31516 * 119.99708 * 174.09379 * 13 11 10 15 15 Si 1.86796 * 120.00094 * 354.09434 * 13 11 10 16 16 H 1.48493 * 109.47235 * 93.91628 * 15 13 11 17 17 H 1.48505 * 109.47038 * 213.92052 * 15 13 11 18 18 H 1.48502 * 109.46901 * 333.91270 * 15 13 11 19 19 C 1.53005 * 117.50008 * 80.62997 * 10 9 8 20 20 C 1.53000 * 117.50359 * 149.29023 * 10 9 8 21 21 C 1.33639 * 114.49935 * 0.23180 * 4 3 2 22 22 S 1.70968 * 124.91547 * 179.97438 * 2 1 3 23 23 H 1.09002 * 109.47186 * 90.00023 * 1 2 3 24 24 H 1.08993 * 109.46912 * 210.00304 * 1 2 3 25 25 H 1.08997 * 109.47048 * 330.00486 * 1 2 3 26 26 H 1.08995 * 109.47567 * 185.02327 * 5 4 3 27 27 H 1.09007 * 109.46964 * 65.01910 * 5 4 3 28 28 H 1.09004 * 109.47355 * 64.14518 * 9 8 6 29 29 H 1.08997 * 109.47129 * 304.13864 * 9 8 6 30 30 H 0.97004 * 119.99832 * 179.97438 * 14 13 11 31 31 H 1.08996 * 117.50059 * 215.00709 * 19 10 9 32 32 H 1.09000 * 117.49468 * 0.02562 * 19 10 9 33 33 H 1.09000 * 117.49619 * 359.97438 * 20 10 9 34 34 H 1.09001 * 117.49831 * 144.97501 * 20 10 9 35 35 H 1.07996 * 126.04168 * 179.76790 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5308 2.0246 0.0000 6 6 4.2379 2.9356 -1.1643 7 8 3.2836 2.7214 -1.8738 8 8 5.0372 3.9849 -1.4130 9 6 4.6326 4.8835 -2.4793 10 6 5.7100 5.9505 -2.6833 11 6 5.9185 6.8932 -1.5262 12 1 6.8563 6.8915 -0.9905 13 6 4.9141 7.7619 -1.1551 14 7 5.0499 8.5016 -0.0763 15 14 3.3606 7.8879 -2.1846 16 1 2.3251 6.9786 -1.6316 17 1 2.8591 9.2854 -2.1550 18 1 3.6626 7.5001 -3.5860 19 6 6.9380 5.5654 -3.5109 20 6 5.8880 6.5140 -4.0946 21 6 3.9354 -0.4006 -0.0039 22 16 2.4856 -1.4019 0.0006 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5137 26 1 5.5449 1.6352 -0.0894 27 1 4.4368 2.5834 0.9312 28 1 3.6915 5.3640 -2.2120 29 1 4.5026 4.3175 -3.4017 30 1 4.3434 9.1130 0.1846 31 1 7.8966 5.9939 -3.2184 32 1 6.9780 4.5520 -3.9103 33 1 5.2378 6.1243 -4.8778 34 1 6.1554 7.5667 -4.1861 35 1 4.9545 -0.7581 -0.0079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174737512.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:15 Heat of formation + Delta-G solvation = -14.521206 kcal Electronic energy + Delta-G solvation = -19369.807192 eV Core-core repulsion = 16268.022889 eV Total energy + Delta-G solvation = -3101.784303 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.39799 -39.34628 -37.04078 -35.32302 -33.24099 -32.12737 -30.07145 -28.15075 -27.07482 -25.20599 -23.23399 -21.64970 -20.73272 -19.71122 -19.14664 -17.78597 -17.15065 -16.65187 -15.93085 -15.53980 -15.22236 -14.89112 -14.64459 -13.88689 -13.75883 -13.51418 -13.07103 -12.91309 -12.63594 -12.35206 -12.32253 -12.06512 -11.91117 -11.50177 -11.05463 -10.86633 -10.61866 -10.33164 -10.00563 -9.91210 -9.64864 -9.51343 -9.46087 -9.05680 -8.82853 -8.66801 -8.48075 -6.11631 -4.11936 0.59875 1.24278 1.58050 2.61710 2.71543 3.27737 3.36329 3.39557 3.43642 3.93153 4.40796 4.69032 4.83954 4.97756 5.10364 5.15097 5.20124 5.28790 5.37935 5.44618 5.63737 5.67948 5.70485 5.90211 5.98468 6.05044 6.15808 6.36719 6.46406 6.66508 6.88859 7.08237 7.20529 7.70670 7.72662 8.34845 8.50065 8.91929 9.51120 11.00217 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.024673 B = 0.004265 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.592320 B = 6562.829652 C = 6973.028096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.053 3.947 3 N -0.446 5.446 4 C 0.087 3.913 5 C -0.041 4.041 6 C 0.457 3.543 7 O -0.506 6.506 8 O -0.329 6.329 9 C 0.109 3.891 10 C -0.008 4.008 11 C -0.478 4.478 12 H 0.080 0.920 13 C 0.080 3.920 14 N -0.894 5.894 15 Si 0.859 3.141 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.249 1.249 19 C -0.175 4.175 20 C -0.182 4.182 21 C -0.254 4.254 22 S 0.103 5.897 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.265 0.735 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.743 -19.436 0.214 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.226 4.226 3 N -0.160 5.160 4 C -0.045 4.045 5 C -0.081 4.081 6 C 0.298 3.702 7 O -0.395 6.395 8 O -0.244 6.244 9 C 0.035 3.965 10 C -0.009 4.009 11 C -0.515 4.515 12 H 0.098 0.902 13 C -0.123 4.123 14 N -0.531 5.531 15 Si 0.686 3.314 16 H -0.205 1.205 17 H -0.214 1.214 18 H -0.173 1.173 19 C -0.213 4.213 20 C -0.220 4.220 21 C -0.393 4.393 22 S 0.357 5.643 23 H 0.105 0.895 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.138 0.862 27 H 0.143 0.857 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -5.567 -19.887 0.089 20.651 hybrid contribution -0.370 0.903 -0.576 1.134 sum -5.936 -18.983 -0.487 19.896 Atomic orbital electron populations 1.20445 0.85201 1.04082 1.04004 1.27052 1.01835 0.90452 1.03236 1.66026 1.04323 1.31242 1.14385 1.19635 0.90014 0.93141 1.01705 1.19832 0.98279 0.92075 0.97935 1.23191 0.80813 0.80977 0.85201 1.90640 1.28540 1.72356 1.47949 1.86557 1.49736 1.34671 1.53468 1.22919 0.98613 0.88661 0.86295 1.19339 0.93907 0.95575 0.92058 1.20224 1.02492 1.16604 1.12158 0.90191 1.24907 0.97867 0.95116 0.94375 1.69890 1.34131 1.25682 1.23381 0.87142 0.83913 0.77401 0.82953 1.20462 1.21414 1.17277 1.22784 0.94897 0.98004 1.05569 1.23080 1.02731 0.99076 0.97091 1.26741 1.03290 0.95459 1.13821 1.83807 0.97975 1.13277 1.69228 0.89531 0.90205 0.89146 0.86160 0.85711 0.92201 0.93295 0.92515 0.89313 0.90879 0.91122 0.88874 0.80278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.46 36.01 0.38 -0.32 16 2 C 0.05 0.67 7.39 -13.45 -0.10 0.57 16 3 N -0.45 -7.18 9.60 -8.06 -0.08 -7.26 16 4 C 0.09 1.26 5.68 -84.23 -0.48 0.79 16 5 C -0.04 -0.59 6.31 -29.03 -0.18 -0.77 16 6 C 0.46 8.94 7.92 36.01 0.29 9.23 16 7 O -0.51 -11.22 15.06 -18.75 -0.28 -11.50 16 8 O -0.33 -7.23 10.15 -39.27 -0.40 -7.63 16 9 C 0.11 2.51 5.00 37.16 0.19 2.69 16 10 C -0.01 -0.18 1.06 -155.66 -0.17 -0.35 16 11 C -0.48 -13.38 9.33 -34.44 -0.32 -13.70 16 12 H 0.08 2.43 8.06 -52.48 -0.42 2.00 16 13 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 14 N -0.89 -27.20 13.96 55.43 0.77 -26.43 16 15 Si 0.86 21.68 24.98 -169.99 -4.25 17.43 16 16 H -0.28 -7.15 7.04 56.52 0.40 -6.76 16 17 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 18 H -0.25 -5.86 5.71 56.52 0.32 -5.54 16 19 C -0.18 -3.57 9.96 -26.69 -0.27 -3.84 16 20 C -0.18 -3.84 8.01 -26.69 -0.21 -4.05 16 21 C -0.25 -2.87 11.07 29.12 0.32 -2.55 16 22 S 0.10 1.04 23.18 -107.50 -2.49 -1.46 16 23 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.12 1.29 8.03 -51.93 -0.42 0.88 16 27 H 0.13 1.68 8.14 -51.92 -0.42 1.25 16 28 H 0.06 1.49 5.09 -51.93 -0.26 1.22 16 29 H 0.05 1.04 7.94 -51.93 -0.41 0.63 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.09 1.98 8.14 -51.93 -0.42 1.55 16 35 H 0.18 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -34.30 315.05 -7.17 -41.47 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.54 Total: 0.71 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -0.65 Total: -10.09 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.70 Total: -33.68 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.68 Total: -19.12 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.25 Total: 17.43 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.49 Total: -1.46 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.30 -7.17 -41.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174737512.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.948 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds