Wall clock time and date at job start Tue Mar 31 2020 05:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29027 * 124.91494 * 2 1 4 4 C 1.31781 * 117.12476 * 179.97438 * 3 2 1 5 5 C 1.50696 * 122.75352 * 179.97438 * 4 3 2 6 6 C 1.50708 * 109.46883 * 305.02708 * 5 4 3 7 7 O 1.20826 * 119.99995 * 4.00187 * 6 5 4 8 8 O 1.34233 * 119.99901 * 184.00757 * 6 5 4 9 9 C 1.45193 * 116.99888 * 185.06786 * 8 6 5 10 10 C 1.52999 * 109.47242 * 184.14152 * 9 8 6 11 11 C 1.50703 * 115.54831 * 294.96428 * 10 9 8 12 12 H 1.08005 * 119.99734 * 114.86751 * 11 10 9 13 13 C 1.37877 * 119.99908 * 294.58891 * 11 10 9 14 14 N 1.31516 * 119.99708 * 174.09379 * 13 11 10 15 15 Si 1.86796 * 120.00094 * 354.09434 * 13 11 10 16 16 H 1.48493 * 109.47235 * 93.91628 * 15 13 11 17 17 H 1.48505 * 109.47038 * 213.92052 * 15 13 11 18 18 H 1.48502 * 109.46901 * 333.91270 * 15 13 11 19 19 C 1.53005 * 117.50008 * 80.62997 * 10 9 8 20 20 C 1.53000 * 117.50359 * 149.29023 * 10 9 8 21 21 C 1.33639 * 114.49935 * 0.23180 * 4 3 2 22 22 S 1.70968 * 124.91547 * 179.97438 * 2 1 3 23 23 H 1.09002 * 109.47186 * 90.00023 * 1 2 3 24 24 H 1.08993 * 109.46912 * 210.00304 * 1 2 3 25 25 H 1.08997 * 109.47048 * 330.00486 * 1 2 3 26 26 H 1.08995 * 109.47567 * 185.02327 * 5 4 3 27 27 H 1.09007 * 109.46964 * 65.01910 * 5 4 3 28 28 H 1.09004 * 109.47355 * 64.14518 * 9 8 6 29 29 H 1.08997 * 109.47129 * 304.13864 * 9 8 6 30 30 H 0.97004 * 119.99832 * 179.97438 * 14 13 11 31 31 H 1.08996 * 117.50059 * 215.00709 * 19 10 9 32 32 H 1.09000 * 117.49468 * 0.02562 * 19 10 9 33 33 H 1.09000 * 117.49619 * 359.97438 * 20 10 9 34 34 H 1.09001 * 117.49831 * 144.97501 * 20 10 9 35 35 H 1.07996 * 126.04168 * 179.76790 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5308 2.0246 0.0000 6 6 4.2379 2.9356 -1.1643 7 8 3.2836 2.7214 -1.8738 8 8 5.0372 3.9849 -1.4130 9 6 4.6326 4.8835 -2.4793 10 6 5.7100 5.9505 -2.6833 11 6 5.9185 6.8932 -1.5262 12 1 6.8563 6.8915 -0.9905 13 6 4.9141 7.7619 -1.1551 14 7 5.0499 8.5016 -0.0763 15 14 3.3606 7.8879 -2.1846 16 1 2.3251 6.9786 -1.6316 17 1 2.8591 9.2854 -2.1550 18 1 3.6626 7.5001 -3.5860 19 6 6.9380 5.5654 -3.5109 20 6 5.8880 6.5140 -4.0946 21 6 3.9354 -0.4006 -0.0039 22 16 2.4856 -1.4019 0.0006 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5137 26 1 5.5449 1.6352 -0.0894 27 1 4.4368 2.5834 0.9312 28 1 3.6915 5.3640 -2.2120 29 1 4.5026 4.3175 -3.4017 30 1 4.3434 9.1130 0.1846 31 1 7.8966 5.9939 -3.2184 32 1 6.9780 4.5520 -3.9103 33 1 5.2378 6.1243 -4.8778 34 1 6.1554 7.5667 -4.1861 35 1 4.9545 -0.7581 -0.0079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174737512.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:15 Heat of formation + Delta-G solvation = -36.876586 kcal Electronic energy + Delta-G solvation = -19370.776594 eV Core-core repulsion = 16268.022889 eV Total energy + Delta-G solvation = -3102.753705 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.69384 -40.60199 -38.76130 -36.98247 -34.30708 -34.18987 -31.10379 -29.25917 -28.64094 -27.22786 -24.24204 -23.28276 -22.11889 -21.07744 -20.63988 -18.90032 -18.81861 -18.33564 -17.60658 -16.97529 -16.68070 -16.17964 -15.85792 -15.38239 -15.00154 -14.74977 -14.65011 -14.30566 -14.06632 -13.83442 -13.42137 -13.19475 -13.03820 -13.00420 -12.83467 -12.43798 -12.28641 -12.13423 -11.74718 -11.61283 -11.38550 -11.01216 -10.64988 -10.55942 -10.41042 -10.34864 -9.68754 -8.33461 -6.36600 -0.27258 0.42822 0.69819 1.19983 1.26940 1.31685 1.41659 1.51532 2.05844 2.30242 2.94969 3.07308 3.27734 3.70935 3.88411 3.97925 4.07865 4.13204 4.28798 4.32934 4.39557 4.44582 4.46982 4.62015 4.63057 4.73589 4.86276 4.95343 4.97642 5.16980 5.20242 5.46852 5.59713 5.65077 6.27723 6.67795 6.80476 6.84735 7.29480 8.82137 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.024673 B = 0.004265 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.592320 B = 6562.829652 C = 6973.028096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.028 3.972 3 N -0.501 5.501 4 C 0.050 3.950 5 C -0.034 4.034 6 C 0.452 3.548 7 O -0.535 6.535 8 O -0.345 6.345 9 C 0.112 3.888 10 C -0.044 4.044 11 C -0.474 4.474 12 H 0.039 0.961 13 C 0.028 3.972 14 N -0.942 5.942 15 Si 0.913 3.087 16 H -0.290 1.290 17 H -0.286 1.286 18 H -0.218 1.218 19 C -0.154 4.154 20 C -0.170 4.170 21 C -0.246 4.246 22 S 0.170 5.830 23 H 0.091 0.909 24 H 0.110 0.890 25 H 0.079 0.921 26 H 0.159 0.841 27 H 0.127 0.873 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.266 0.734 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.810 -22.137 -1.294 22.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.250 4.250 3 N -0.216 5.216 4 C -0.081 4.081 5 C -0.074 4.074 6 C 0.295 3.705 7 O -0.425 6.425 8 O -0.261 6.261 9 C 0.039 3.961 10 C -0.044 4.044 11 C -0.512 4.512 12 H 0.057 0.943 13 C -0.170 4.170 14 N -0.582 5.582 15 Si 0.739 3.261 16 H -0.217 1.217 17 H -0.212 1.212 18 H -0.140 1.140 19 C -0.191 4.191 20 C -0.207 4.207 21 C -0.385 4.385 22 S 0.425 5.575 23 H 0.109 0.891 24 H 0.128 0.872 25 H 0.098 0.902 26 H 0.176 0.824 27 H 0.145 0.855 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -5.624 -22.609 -1.437 23.343 hybrid contribution -0.285 1.597 -0.048 1.623 sum -5.909 -21.013 -1.485 21.878 Atomic orbital electron populations 1.20585 0.83545 1.05117 1.04575 1.27564 1.03289 0.91245 1.02919 1.66013 1.05561 1.33669 1.16387 1.19692 0.89780 0.94118 1.04530 1.19986 1.00557 0.91461 0.95361 1.24223 0.79892 0.80420 0.85922 1.90610 1.29604 1.72912 1.49343 1.86576 1.50641 1.35409 1.53448 1.22722 0.97072 0.88889 0.87453 1.19243 0.96996 0.96208 0.92003 1.20376 1.00663 1.17057 1.13087 0.94252 1.25636 1.01007 0.95004 0.95366 1.70020 1.35457 1.27233 1.25489 0.86271 0.79822 0.77001 0.83054 1.21726 1.21196 1.14035 1.22858 0.93677 0.99432 1.03091 1.23137 1.02897 0.99334 0.95351 1.27192 1.05527 0.94774 1.11049 1.83525 0.95968 1.10701 1.67352 0.89085 0.87150 0.90177 0.82366 0.85492 0.94615 0.91295 0.92532 0.89446 0.87974 0.88373 0.89261 0.77078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 10.46 71.24 0.75 -0.58 16 2 C 0.03 0.67 7.39 88.52 0.65 1.32 16 3 N -0.50 -16.00 9.60 -179.41 -1.72 -17.72 16 4 C 0.05 1.40 5.68 41.52 0.24 1.63 16 5 C -0.03 -0.95 6.31 29.10 0.18 -0.77 16 6 C 0.45 17.57 7.92 71.24 0.56 18.13 16 7 O -0.53 -23.70 15.06 21.97 0.33 -23.37 16 8 O -0.34 -15.08 10.15 -51.44 -0.52 -15.60 16 9 C 0.11 5.08 5.00 71.98 0.36 5.44 16 10 C -0.04 -2.02 1.06 -52.93 -0.06 -2.08 16 11 C -0.47 -27.13 9.33 25.60 0.24 -26.89 16 12 H 0.04 2.49 8.06 -2.91 -0.02 2.47 16 13 C 0.03 1.64 5.47 84.65 0.46 2.11 16 14 N -0.94 -59.42 13.96 21.45 0.30 -59.12 16 15 Si 0.91 45.24 24.98 68.60 1.71 46.95 16 16 H -0.29 -14.84 7.04 99.48 0.70 -14.14 16 17 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 18 H -0.22 -9.59 5.71 99.48 0.57 -9.02 16 19 C -0.15 -5.86 9.96 30.62 0.30 -5.55 16 20 C -0.17 -6.65 8.01 30.62 0.25 -6.40 16 21 C -0.25 -4.87 11.07 66.78 0.74 -4.13 16 22 S 0.17 2.93 23.18 -56.49 -1.31 1.62 16 23 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 24 H 0.11 1.10 8.14 -2.39 -0.02 1.09 16 25 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.16 3.02 8.03 -2.39 -0.02 3.00 16 27 H 0.13 3.41 8.14 -2.38 -0.02 3.39 16 28 H 0.04 1.77 5.09 -2.39 -0.01 1.75 16 29 H 0.07 2.80 7.94 -2.39 -0.02 2.78 16 30 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 31 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 33 H 0.10 3.33 8.14 -2.39 -0.02 3.32 16 34 H 0.09 3.56 8.14 -2.39 -0.02 3.55 16 35 H 0.21 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -77.38 315.05 4.42 -72.96 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.95 Total: 12.04 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 4.68 Total: -17.76 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -1.42 Total: -76.84 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -0.19 Total: -38.97 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.71 Total: 46.95 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -1.31 Total: 1.62 kcal Total: -77.38 4.42 -72.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174737512.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.083 kcal (2) G-P(sol) polarization free energy of solvation -77.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds