Wall clock time and date at job start Tue Mar 31 2020 05:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00029 * 2 1 4 4 H 1.48507 * 109.46939 * 240.00053 * 3 2 1 5 5 H 1.48504 * 109.47280 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47329 * 119.99843 * 3 2 1 7 7 C 1.37877 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00298 * 173.70708 * 7 2 1 9 9 C 1.50703 * 119.99958 * 353.70954 * 7 2 1 10 10 C 1.52998 * 115.55078 * 86.10766 * 9 7 2 11 11 O 1.45206 * 109.46817 * 65.10973 * 10 9 7 12 12 C 1.34228 * 116.99667 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00321 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99931 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.47162 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.46939 * 179.97438 * 15 14 12 17 17 C 1.33639 * 122.74819 * 124.73240 * 16 15 14 18 18 S 1.76196 * 107.92410 * 179.97438 * 17 16 15 19 19 C 1.70973 * 90.28133 * 0.27653 * 18 17 16 20 20 N 1.29023 * 110.17121 * 359.83892 * 19 18 17 21 21 C 1.52996 * 117.49652 * 231.78401 * 9 7 2 22 22 C 1.53006 * 117.49733 * 300.43883 * 9 7 2 23 23 H 0.97004 * 119.99832 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47394 * 305.10568 * 10 9 7 25 25 H 1.08998 * 109.47028 * 185.10642 * 10 9 7 26 26 H 1.09001 * 109.47259 * 59.99687 * 14 12 11 27 27 H 1.09004 * 109.46704 * 300.00000 * 14 12 11 28 28 H 1.08995 * 109.47221 * 299.99812 * 15 14 12 29 29 H 1.09005 * 109.46846 * 60.00038 * 15 14 12 30 30 H 1.08004 * 126.03815 * 0.04012 * 17 16 15 31 31 H 1.08004 * 124.91722 * 179.83948 * 19 18 17 32 32 H 1.09008 * 117.49955 * 215.00300 * 21 9 7 33 33 H 1.09000 * 117.50502 * 0.02562 * 21 9 7 34 34 H 1.08999 * 117.50021 * 359.97438 * 22 9 7 35 35 H 1.08994 * 117.49697 * 144.97366 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0796 -1.1970 -0.1020 9 6 1.2578 -2.4952 0.1441 10 6 0.7192 -3.0940 -1.1567 11 8 1.8302 -3.4659 -2.0147 12 6 1.5263 -4.0106 -3.2032 13 8 0.3705 -4.1718 -3.5162 14 6 2.6269 -4.4222 -4.1468 15 6 2.0142 -5.0106 -5.4193 16 6 3.1148 -5.4216 -6.3632 17 6 3.2191 -6.6591 -6.8569 18 16 4.6326 -6.7062 -7.9078 19 6 4.9473 -5.0595 -7.5724 20 7 4.0568 -4.5920 -6.7643 21 6 1.7339 -3.4672 1.2254 22 6 0.4251 -2.6956 1.4120 23 1 -0.4850 0.8401 -0.0004 24 1 0.0977 -2.3574 -1.6658 25 1 0.1232 -3.9781 -0.9303 26 1 3.2558 -5.1719 -3.6666 27 1 3.2306 -3.5514 -4.4028 28 1 1.4108 -5.8814 -5.1630 29 1 1.3850 -4.2612 -5.8997 30 1 2.5539 -7.4842 -6.6493 31 1 5.7722 -4.4926 -7.9783 32 1 1.6635 -4.5335 1.0101 33 1 2.5868 -3.1656 1.8333 34 1 0.4178 -1.8866 2.1424 35 1 -0.5065 -3.2537 1.3192 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174744330.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:10 Heat of formation + Delta-G solvation = -24.367371 kcal Electronic energy + Delta-G solvation = -18915.225393 eV Core-core repulsion = 15813.014128 eV Total energy + Delta-G solvation = -3102.211265 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.23431 -39.57832 -36.82635 -35.25816 -33.56750 -31.94150 -30.16283 -27.15465 -25.78575 -25.17755 -24.06081 -21.18421 -20.14514 -19.73312 -19.23577 -18.14582 -16.95291 -16.50460 -16.07078 -15.81645 -15.26756 -14.66031 -14.60098 -13.97300 -13.83633 -13.48120 -13.33942 -12.94504 -12.35037 -12.07269 -11.84949 -11.61602 -11.53622 -11.07333 -10.95153 -10.83632 -10.53752 -10.27850 -9.99509 -9.88029 -9.82315 -9.71407 -9.53690 -9.04873 -8.81462 -8.44785 -8.19406 -6.05251 -4.10544 0.48289 1.15123 1.47694 2.55683 2.80316 3.32155 3.36781 3.39495 3.41370 4.00320 4.40988 4.79618 4.89931 5.04226 5.06829 5.22255 5.25539 5.35449 5.49477 5.69316 5.85527 5.96592 6.00630 6.11062 6.25971 6.34904 6.54754 6.67564 6.74679 7.04162 7.29199 7.38118 7.49486 7.50085 7.88034 8.37720 8.48154 8.90990 9.55298 11.04114 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023546 B = 0.003399 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.854077 B = 8234.977166 C = 8872.306087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.491 4.491 8 H 0.063 0.937 9 C 0.038 3.962 10 C 0.116 3.884 11 O -0.337 6.337 12 C 0.455 3.545 13 O -0.527 6.527 14 C -0.107 4.107 15 C -0.033 4.033 16 C 0.071 3.929 17 C -0.252 4.252 18 S 0.105 5.895 19 C 0.026 3.974 20 N -0.463 5.463 21 C -0.206 4.206 22 C -0.145 4.145 23 H 0.262 0.738 24 H 0.075 0.925 25 H 0.038 0.962 26 H 0.099 0.901 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.179 0.821 31 H 0.200 0.800 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.873 -13.170 -13.748 20.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.529 4.529 8 H 0.081 0.919 9 C 0.037 3.963 10 C 0.043 3.957 11 O -0.252 6.252 12 C 0.298 3.702 13 O -0.418 6.418 14 C -0.145 4.145 15 C -0.073 4.073 16 C -0.060 4.060 17 C -0.391 4.391 18 S 0.357 5.643 19 C -0.272 4.272 20 N -0.177 5.177 21 C -0.243 4.243 22 C -0.182 4.182 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.056 0.944 26 H 0.118 0.882 27 H 0.130 0.870 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.196 0.804 31 H 0.217 0.783 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.897 -13.247 -14.253 21.000 hybrid contribution -0.371 1.191 0.511 1.348 sum 7.527 -12.056 -13.742 19.769 Atomic orbital electron populations 1.69993 1.05913 1.26807 1.49121 1.25013 0.94859 0.99085 0.94474 0.86643 0.79650 0.82878 0.78782 1.20090 1.21278 1.20131 1.20359 0.93096 0.88369 1.51033 0.91903 1.18772 0.98921 0.94193 0.84406 1.22893 0.85449 0.96859 0.90545 1.86524 1.41393 1.70493 1.26817 1.23508 0.89868 0.74539 0.82271 1.90607 1.22297 1.52676 1.76200 1.21212 0.96454 1.03838 0.92972 1.19997 0.93091 1.02516 0.91656 1.20358 0.96727 0.88939 0.99983 1.26889 1.03894 1.02365 1.05954 1.84021 1.22620 1.13052 1.44589 1.28452 1.02519 0.96301 0.99970 1.66134 1.03200 1.36464 1.11857 1.23010 0.98558 0.95696 1.07027 1.22531 0.92264 1.01204 1.02222 0.92858 0.90645 0.94367 0.88238 0.87002 0.89245 0.88967 0.80369 0.78324 0.91586 0.90075 0.89420 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.11 12.88 55.43 0.71 -24.40 16 2 C 0.07 1.90 5.38 -17.82 -0.10 1.80 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.49 -13.56 8.77 -34.44 -0.30 -13.86 16 8 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 9 C 0.04 0.95 1.62 -155.66 -0.25 0.69 16 10 C 0.12 2.79 5.29 37.16 0.20 2.99 16 11 O -0.34 -7.52 10.16 -39.25 -0.40 -7.91 16 12 C 0.45 8.71 7.96 36.01 0.29 9.00 16 13 O -0.53 -11.15 15.73 -18.75 -0.29 -11.45 16 14 C -0.11 -1.52 5.71 -27.88 -0.16 -1.68 16 15 C -0.03 -0.41 5.00 -27.88 -0.14 -0.55 16 16 C 0.07 0.82 6.08 -84.22 -0.51 0.31 16 17 C -0.25 -2.31 11.07 29.12 0.32 -1.99 16 18 S 0.11 0.79 23.22 -107.50 -2.50 -1.71 16 19 C 0.03 0.23 12.23 51.58 0.63 0.86 16 20 N -0.46 -5.58 10.34 -11.90 -0.12 -5.71 16 21 C -0.21 -4.53 9.96 -26.70 -0.27 -4.80 16 22 C -0.14 -3.39 9.37 -26.69 -0.25 -3.64 16 23 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 24 H 0.08 2.01 8.13 -51.93 -0.42 1.59 16 25 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 26 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.11 1.62 8.08 -51.93 -0.42 1.21 16 28 H 0.09 1.02 7.98 -51.93 -0.41 0.61 16 29 H 0.09 1.25 8.10 -51.93 -0.42 0.82 16 30 H 0.18 1.25 8.06 -52.48 -0.42 0.82 16 31 H 0.20 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16 33 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 34 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 35 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 324.97 15.07 4.90 4.90 Total: -1.00 -31.52 324.97 -7.87 -39.39 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.60 Total: 1.49 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -0.54 Total: -10.87 kcal Atomic # 7 Polarization: -30.70 SS G_CDS: 0.59 Total: -30.10 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.69 Total: -19.36 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.50 Total: -1.71 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.52 -7.87 -39.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174744330.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.021 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds