Wall clock time and date at job start Tue Mar 31 2020 05:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00289 * 2 1 4 4 H 1.48495 * 109.47562 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46995 * 299.99882 * 3 2 1 6 6 H 1.48500 * 109.47236 * 59.99315 * 3 2 1 7 7 C 1.37885 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00116 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99708 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46928 * 179.97438 * 9 7 2 11 11 O 1.45195 * 109.47347 * 179.97438 * 10 9 7 12 12 C 1.34232 * 117.00503 * 180.02562 * 11 10 9 13 13 O 1.20821 * 119.99477 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00200 * 179.97438 * 12 11 10 15 15 C 1.52993 * 109.46977 * 179.97438 * 14 12 11 16 16 S 1.81399 * 109.47075 * 179.97438 * 15 14 12 17 17 C 1.76200 * 102.99971 * 179.97438 * 16 15 14 18 18 C 1.39208 * 119.70805 * 179.97438 * 17 16 15 19 19 C 1.38274 * 119.08752 * 179.97438 * 18 17 16 20 20 C 1.38909 * 118.51576 * 0.02562 * 19 18 17 21 21 C 1.38031 * 119.33836 * 0.27638 * 20 19 18 22 22 N 1.31960 * 120.86241 * 359.44535 * 21 20 19 23 23 H 0.97005 * 120.00061 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47416 * 59.99478 * 9 7 2 25 25 H 1.09002 * 109.46453 * 299.99192 * 9 7 2 26 26 H 1.08998 * 109.47301 * 59.99649 * 10 9 7 27 27 H 1.08997 * 109.47053 * 299.99791 * 10 9 7 28 28 H 1.09003 * 109.47099 * 59.99802 * 14 12 11 29 29 H 1.09002 * 109.46704 * 300.00070 * 14 12 11 30 30 H 1.09003 * 109.47112 * 60.00123 * 15 14 12 31 31 H 1.09002 * 109.47075 * 300.00163 * 15 14 12 32 32 H 1.07997 * 120.45449 * 0.02633 * 18 17 16 33 33 H 1.08004 * 120.73533 * 180.02562 * 19 18 17 34 34 H 1.08002 * 120.32660 * 179.97438 * 20 19 18 35 35 H 1.08000 * 119.56637 * 179.72239 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5192 -4.9196 0.0011 12 6 2.2503 -6.0454 0.0018 13 8 3.4568 -5.9821 0.0013 14 6 1.5661 -7.3881 0.0030 15 6 2.6198 -8.4973 0.0029 16 16 1.7963 -10.1136 0.0051 17 6 3.1460 -11.2462 0.0039 18 6 2.8973 -12.6159 0.0057 19 6 3.9662 -13.4931 0.0042 20 6 5.2531 -12.9704 0.0015 21 6 5.4269 -11.6011 0.0061 22 7 4.3885 -10.7869 0.0022 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8719 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8894 28 1 0.9430 -7.4792 -0.8867 29 1 0.9436 -7.4778 0.8933 30 1 3.2432 -8.4064 0.8924 31 1 3.2420 -8.4073 -0.8876 32 1 1.8836 -12.9881 0.0074 33 1 3.8038 -14.5609 0.0051 34 1 6.1092 -13.6289 0.0006 35 1 6.4259 -11.1907 0.0086 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176831260.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:34 Heat of formation + Delta-G solvation = -70.666917 kcal Electronic energy + Delta-G solvation = -17895.822336 eV Core-core repulsion = 14791.603372 eV Total energy + Delta-G solvation = -3104.218964 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.23917 -40.00051 -36.28621 -33.41933 -33.22255 -32.76911 -31.62048 -30.26541 -25.98292 -24.56807 -24.02523 -23.60313 -21.07638 -20.33077 -18.31902 -17.61491 -16.68501 -16.44985 -16.42585 -16.20659 -15.83022 -15.07735 -14.93525 -14.51358 -14.32846 -13.81673 -13.53358 -13.09731 -12.72333 -12.56050 -12.31807 -12.07721 -11.69957 -11.23023 -11.04706 -10.77630 -10.72043 -10.68929 -10.43658 -10.25507 -10.08789 -9.90974 -9.65855 -9.62392 -9.28692 -8.45252 -7.87789 -6.10977 -4.15242 0.61378 0.87071 1.08862 1.92426 2.52978 3.24434 3.27351 3.34171 3.35237 3.40958 4.17020 4.39098 4.44461 4.48466 4.69714 4.70975 4.77282 4.88407 5.16273 5.25685 5.29849 5.40085 5.50011 5.57289 5.76339 5.79181 6.08545 6.08924 6.19375 6.62940 6.97295 7.41272 7.55470 7.61688 7.86032 8.16036 8.24913 8.90552 9.49200 11.00550 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.053281 B = 0.002333 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.386148 B =11999.357366 C =12493.692089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.356 6.356 12 C 0.462 3.538 13 O -0.515 6.515 14 C -0.104 4.104 15 C -0.083 4.083 16 S -0.071 6.071 17 C 0.123 3.877 18 C -0.152 4.152 19 C -0.059 4.059 20 C -0.183 4.183 21 C 0.117 3.883 22 N -0.488 5.488 23 H 0.263 0.737 24 H 0.028 0.972 25 H 0.029 0.971 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.372 -27.859 0.018 28.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.272 6.272 12 C 0.303 3.697 13 O -0.404 6.404 14 C -0.144 4.144 15 C -0.232 4.232 16 S 0.172 5.828 17 C -0.126 4.126 18 C -0.179 4.179 19 C -0.087 4.087 20 C -0.206 4.206 21 C -0.043 4.043 22 N -0.200 5.200 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.474 -26.869 0.017 27.239 hybrid contribution 1.847 0.268 -0.003 1.867 sum 6.321 -26.601 0.014 27.342 Atomic orbital electron populations 1.69981 1.06088 1.26889 1.49847 1.24992 0.94931 0.99422 0.94882 0.86411 0.80050 0.83127 0.77700 1.19596 1.20824 1.20827 1.21019 0.93219 0.90098 1.52074 0.92197 1.19183 0.94206 0.89038 0.98919 1.23665 0.96387 0.78664 1.01016 1.86518 1.42384 1.15783 1.82498 1.23173 0.86463 0.87111 0.72993 1.90653 1.15730 1.88297 1.45769 1.21033 0.98329 0.88026 1.06967 1.23240 1.00121 0.91220 1.08573 1.85429 1.07445 0.98868 1.91085 1.23090 0.95668 0.94934 0.98893 1.21661 1.00832 0.91975 1.03391 1.21513 0.92209 1.00246 0.94724 1.22114 0.98168 0.96830 1.03482 1.22782 0.97669 0.90259 0.93638 1.68124 0.98185 1.39537 1.14195 0.92752 0.95314 0.95304 0.92252 0.92244 0.86869 0.86864 0.87942 0.87936 0.84243 0.84314 0.84538 0.82342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.53 -14.87 9.11 -34.44 -0.31 -15.19 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 9 C 0.02 0.62 5.35 -27.88 -0.15 0.47 16 10 C 0.08 1.68 5.40 37.16 0.20 1.89 16 11 O -0.36 -7.07 10.22 -39.26 -0.40 -7.47 16 12 C 0.46 7.89 7.96 36.01 0.29 8.18 16 13 O -0.52 -10.15 15.73 -18.75 -0.29 -10.44 16 14 C -0.10 -1.25 5.82 -27.89 -0.16 -1.41 16 15 C -0.08 -1.00 4.49 37.15 0.17 -0.83 16 16 S -0.07 -0.74 21.91 -107.50 -2.36 -3.09 16 17 C 0.12 1.33 7.00 -16.92 -0.12 1.21 16 18 C -0.15 -1.27 9.84 -39.21 -0.39 -1.65 16 19 C -0.06 -0.39 10.16 -39.32 -0.40 -0.79 16 20 C -0.18 -1.22 10.11 -39.41 -0.40 -1.62 16 21 C 0.12 1.03 11.17 -17.57 -0.20 0.84 16 22 N -0.49 -5.72 9.43 -12.10 -0.11 -5.83 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 27 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 28 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.10 1.34 8.10 -51.92 -0.42 0.92 16 31 H 0.10 1.34 8.10 -51.92 -0.42 0.92 16 32 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 34 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 35 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -32.88 326.63 -8.70 -41.58 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -4.61 Total: -3.15 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -1.57 Total: -7.30 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.62 Total: -31.52 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.70 Total: -17.92 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -0.74 SS G_CDS: -2.36 Total: -3.09 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.88 -8.70 -41.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176831260.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.084 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds