Wall clock time and date at job start Tue Mar 31 2020 05:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00289 * 2 1 4 4 H 1.48495 * 109.47562 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46995 * 299.99882 * 3 2 1 6 6 H 1.48500 * 109.47236 * 59.99315 * 3 2 1 7 7 C 1.37885 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00116 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99708 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46928 * 179.97438 * 9 7 2 11 11 O 1.45195 * 109.47347 * 179.97438 * 10 9 7 12 12 C 1.34232 * 117.00503 * 180.02562 * 11 10 9 13 13 O 1.20821 * 119.99477 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00200 * 179.97438 * 12 11 10 15 15 C 1.52993 * 109.46977 * 179.97438 * 14 12 11 16 16 S 1.81399 * 109.47075 * 179.97438 * 15 14 12 17 17 C 1.76200 * 102.99971 * 179.97438 * 16 15 14 18 18 C 1.39208 * 119.70805 * 179.97438 * 17 16 15 19 19 C 1.38274 * 119.08752 * 179.97438 * 18 17 16 20 20 C 1.38909 * 118.51576 * 0.02562 * 19 18 17 21 21 C 1.38031 * 119.33836 * 0.27638 * 20 19 18 22 22 N 1.31960 * 120.86241 * 359.44535 * 21 20 19 23 23 H 0.97005 * 120.00061 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47416 * 59.99478 * 9 7 2 25 25 H 1.09002 * 109.46453 * 299.99192 * 9 7 2 26 26 H 1.08998 * 109.47301 * 59.99649 * 10 9 7 27 27 H 1.08997 * 109.47053 * 299.99791 * 10 9 7 28 28 H 1.09003 * 109.47099 * 59.99802 * 14 12 11 29 29 H 1.09002 * 109.46704 * 300.00070 * 14 12 11 30 30 H 1.09003 * 109.47112 * 60.00123 * 15 14 12 31 31 H 1.09002 * 109.47075 * 300.00163 * 15 14 12 32 32 H 1.07997 * 120.45449 * 0.02633 * 18 17 16 33 33 H 1.08004 * 120.73533 * 180.02562 * 19 18 17 34 34 H 1.08002 * 120.32660 * 179.97438 * 20 19 18 35 35 H 1.08000 * 119.56637 * 179.72239 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5192 -4.9196 0.0011 12 6 2.2503 -6.0454 0.0018 13 8 3.4568 -5.9821 0.0013 14 6 1.5661 -7.3881 0.0030 15 6 2.6198 -8.4973 0.0029 16 16 1.7963 -10.1136 0.0051 17 6 3.1460 -11.2462 0.0039 18 6 2.8973 -12.6159 0.0057 19 6 3.9662 -13.4931 0.0042 20 6 5.2531 -12.9704 0.0015 21 6 5.4269 -11.6011 0.0061 22 7 4.3885 -10.7869 0.0022 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8719 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8894 28 1 0.9430 -7.4792 -0.8867 29 1 0.9436 -7.4778 0.8933 30 1 3.2432 -8.4064 0.8924 31 1 3.2420 -8.4073 -0.8876 32 1 1.8836 -12.9881 0.0074 33 1 3.8038 -14.5609 0.0051 34 1 6.1092 -13.6289 0.0006 35 1 6.4259 -11.1907 0.0086 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176831260.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:33 Heat of formation + Delta-G solvation = -89.451703 kcal Electronic energy + Delta-G solvation = -17896.636905 eV Core-core repulsion = 14791.603372 eV Total energy + Delta-G solvation = -3105.033534 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.50953 -40.86064 -37.88124 -35.46605 -34.32825 -33.45581 -32.28810 -32.22741 -27.58708 -26.06121 -24.66533 -24.36329 -22.99178 -21.74571 -19.15517 -18.96287 -18.26289 -17.85671 -17.42320 -17.32102 -16.92468 -16.50906 -16.13666 -15.78309 -15.20293 -14.80170 -14.66297 -14.43392 -14.20930 -13.93705 -13.49465 -13.18001 -13.03004 -12.72240 -12.68011 -12.58481 -12.57952 -11.90265 -11.58886 -11.53247 -11.49976 -11.33769 -11.03482 -10.75523 -10.62945 -10.56237 -8.63012 -8.28304 -6.41418 -0.00563 0.27338 0.29110 1.07934 1.12944 1.40450 1.40908 1.54544 1.85192 2.39736 2.72232 3.06032 3.41083 3.61399 3.79166 3.83837 3.97608 4.12426 4.19159 4.20375 4.23984 4.36925 4.41603 4.53847 4.68244 4.74738 4.81112 5.06052 5.22392 5.25191 5.45460 5.53052 5.66682 5.73320 6.05279 6.67283 6.73134 6.76867 7.28298 8.84468 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.053281 B = 0.002333 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.386148 B =11999.357366 C =12493.692089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.005 3.995 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.550 4.550 8 H 0.064 0.936 9 C 0.030 3.970 10 C 0.090 3.910 11 O -0.363 6.363 12 C 0.461 3.539 13 O -0.543 6.543 14 C -0.092 4.092 15 C -0.079 4.079 16 S -0.055 6.055 17 C 0.090 3.910 18 C -0.156 4.156 19 C -0.057 4.057 20 C -0.172 4.172 21 C 0.093 3.907 22 N -0.525 5.525 23 H 0.268 0.732 24 H 0.008 0.992 25 H 0.008 0.992 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.157 0.843 33 H 0.175 0.825 34 H 0.170 0.830 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.030 -29.610 0.019 30.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.194 4.194 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.588 4.588 8 H 0.082 0.918 9 C -0.007 4.007 10 C 0.017 3.983 11 O -0.279 6.279 12 C 0.304 3.696 13 O -0.433 6.433 14 C -0.130 4.130 15 C -0.227 4.227 16 S 0.187 5.813 17 C -0.158 4.158 18 C -0.182 4.182 19 C -0.084 4.084 20 C -0.194 4.194 21 C -0.066 4.066 22 N -0.238 5.238 23 H 0.077 0.923 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.174 0.826 33 H 0.193 0.807 34 H 0.187 0.813 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.138 -28.649 0.018 29.106 hybrid contribution 1.687 0.622 -0.004 1.798 sum 6.825 -28.027 0.014 28.846 Atomic orbital electron populations 1.70095 1.07770 1.28239 1.50384 1.25973 0.95880 1.03432 0.94098 0.85263 0.78840 0.78056 0.78058 1.18723 1.19994 1.20003 1.21401 0.93671 0.91273 1.52455 0.91792 1.18996 0.94359 0.90575 0.96821 1.23173 0.95080 0.79100 1.00990 1.86509 1.42549 1.15794 1.83082 1.24152 0.86323 0.87649 0.71492 1.90642 1.17144 1.88547 1.47015 1.21133 0.98197 0.84457 1.09231 1.23041 0.99946 0.92791 1.06963 1.85170 1.07242 0.97288 1.91613 1.23285 0.95536 0.95970 1.01045 1.21962 1.02416 0.91141 1.02656 1.21993 0.91518 1.01817 0.93100 1.22503 0.99558 0.96221 1.01128 1.23182 0.97700 0.91482 0.94251 1.68037 0.99133 1.41163 1.15514 0.92298 0.97380 0.97370 0.92232 0.92223 0.84433 0.84427 0.89591 0.89587 0.82577 0.80731 0.81296 0.81085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.66 13.29 21.45 0.28 -55.38 16 2 C 0.01 0.30 5.46 84.66 0.46 0.76 16 3 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.55 -31.54 9.11 25.60 0.23 -31.31 16 8 H 0.06 3.53 7.74 -2.91 -0.02 3.50 16 9 C 0.03 1.61 5.35 29.85 0.16 1.77 16 10 C 0.09 4.11 5.40 71.98 0.39 4.50 16 11 O -0.36 -14.56 10.22 -51.44 -0.53 -15.08 16 12 C 0.46 15.79 7.96 71.24 0.57 16.35 16 13 O -0.54 -21.77 15.73 21.98 0.35 -21.42 16 14 C -0.09 -2.12 5.82 29.85 0.17 -1.94 16 15 C -0.08 -1.90 4.49 71.98 0.32 -1.57 16 16 S -0.06 -1.11 21.91 -56.49 -1.24 -2.35 16 17 C 0.09 1.90 7.00 84.83 0.59 2.49 16 18 C -0.16 -2.30 9.84 22.51 0.22 -2.08 16 19 C -0.06 -0.58 10.16 22.44 0.23 -0.35 16 20 C -0.17 -1.85 10.11 22.38 0.23 -1.63 16 21 C 0.09 1.58 11.17 84.62 0.95 2.52 16 22 N -0.52 -12.35 9.43 -192.21 -1.81 -14.16 16 23 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 24 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 26 H 0.06 2.69 8.13 -2.39 -0.02 2.68 16 27 H 0.06 2.70 8.13 -2.39 -0.02 2.68 16 28 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.09 2.33 8.10 -2.39 -0.02 2.31 16 31 H 0.09 2.34 8.10 -2.39 -0.02 2.32 16 32 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 33 H 0.18 0.47 8.06 -2.91 -0.02 0.44 16 34 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 35 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -72.35 326.63 4.68 -67.67 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 1.08 Total: 5.20 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 4.52 Total: -10.49 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: -1.53 Total: -69.54 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -0.18 Total: -36.50 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -1.24 Total: -2.35 kcal Total: -72.35 4.68 -67.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176831260.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.786 kcal (2) G-P(sol) polarization free energy of solvation -72.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds