Wall clock time and date at job start Tue Mar 31 2020 05:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21674 * 120.00339 * 359.97438 * 14 13 3 16 16 C 1.46772 * 120.00259 * 179.97438 * 14 13 3 17 17 C 1.34717 * 125.00139 * 179.97438 * 16 14 13 18 18 C 1.39218 * 113.66726 * 180.02562 * 17 16 14 19 19 C 1.46539 * 123.03322 * 179.97438 * 18 17 16 20 20 C 1.50699 * 119.99887 * 179.97438 * 19 18 17 21 21 O 1.21337 * 120.00349 * 0.02562 * 19 18 17 22 22 C 1.37068 * 113.92961 * 0.02562 * 18 17 16 23 23 S 1.70592 * 110.49328 * 359.72335 * 22 18 17 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 30 30 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 31 31 H 1.07997 * 123.16651 * 0.02650 * 17 16 14 32 32 H 1.08999 * 109.47278 * 0.02562 * 20 19 18 33 33 H 1.09003 * 109.47352 * 120.00178 * 20 19 18 34 34 H 1.09003 * 109.47272 * 239.99721 * 20 19 18 35 35 H 1.07999 * 124.75234 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3422 2.6318 -0.4313 16 6 0.0469 3.3212 -2.6208 17 6 -1.1400 3.9174 -2.8455 18 6 -1.2576 4.4656 -4.1198 19 6 -2.4616 5.1613 -4.5821 20 6 -2.5147 5.7296 -5.9768 21 8 -3.4155 5.2806 -3.8417 22 6 -0.1460 4.2948 -4.9033 23 16 1.0641 3.4504 -4.0472 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8293 -0.0605 2.9501 30 1 2.2718 2.1232 -1.9978 31 1 -1.9263 3.9656 -2.1068 32 1 -1.5737 5.5267 -6.4880 33 1 -3.3339 5.2665 -6.5270 34 1 -2.6754 6.8065 -5.9245 35 1 -0.0479 4.6498 -5.9185 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183907921.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:53 Heat of formation + Delta-G solvation = -72.371620 kcal Electronic energy + Delta-G solvation = -19258.325146 eV Core-core repulsion = 16154.032260 eV Total energy + Delta-G solvation = -3104.292886 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.07503 -40.48281 -38.02529 -36.88501 -34.39474 -33.11196 -32.16654 -29.92496 -28.84268 -26.53706 -25.19210 -23.74321 -21.62256 -21.25843 -19.90278 -19.56774 -18.24739 -17.49112 -17.12337 -16.74348 -16.45374 -16.10608 -16.00272 -15.64228 -15.05125 -14.62402 -14.28552 -14.10752 -13.74916 -13.67875 -13.44137 -13.19066 -12.96498 -12.95339 -12.92063 -12.65409 -12.27356 -12.21950 -12.09684 -11.62808 -11.11502 -11.03883 -10.77343 -10.54484 -10.11135 -9.77246 -9.63442 -8.16876 -6.35268 -0.67248 0.32153 0.32739 0.71975 1.46229 1.48320 1.56106 1.84859 2.26243 2.29329 2.51177 3.12780 3.22681 3.81565 3.98818 4.12832 4.22160 4.44819 4.52430 4.59097 4.70583 4.70927 4.74164 4.96202 5.04021 5.04291 5.21444 5.28557 5.38768 5.47066 5.56496 5.74225 5.86255 6.12421 6.55490 6.70048 6.82032 7.26990 7.42616 8.88611 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.030386 B = 0.004075 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.261983 B = 6869.289734 C = 7449.325078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.000 1.000 5 C -0.552 4.552 6 H 0.075 0.925 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.973 3.027 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.261 1.261 13 N -0.697 5.697 14 C 0.569 3.431 15 O -0.580 6.580 16 C -0.301 4.301 17 C -0.035 4.035 18 C -0.227 4.227 19 C 0.413 3.587 20 C -0.187 4.187 21 O -0.514 6.514 22 C -0.151 4.151 23 S 0.316 5.684 24 H 0.024 0.976 25 H 0.048 0.952 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.045 0.955 29 H 0.266 0.734 30 H 0.400 0.600 31 H 0.125 0.875 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.629 7.707 -21.592 23.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.018 0.982 5 C -0.590 4.590 6 H 0.093 0.907 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.797 3.203 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.186 1.186 13 N -0.345 5.345 14 C 0.355 3.645 15 O -0.462 6.462 16 C -0.420 4.420 17 C -0.066 4.066 18 C -0.241 4.241 19 C 0.293 3.707 20 C -0.243 4.243 21 O -0.394 6.394 22 C -0.291 4.291 23 S 0.583 5.417 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.235 0.765 31 H 0.143 0.857 32 H 0.133 0.867 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -2.124 7.133 -20.700 21.997 hybrid contribution -0.665 0.280 1.145 1.353 sum -2.789 7.413 -19.555 21.098 Atomic orbital electron populations 1.21700 0.97285 0.99272 1.00059 1.21798 0.93463 0.99003 1.01691 1.18470 0.94089 0.89237 0.80705 0.98248 1.21520 0.90983 1.39409 1.07042 0.90702 1.25791 1.03537 0.94186 0.94865 1.70046 1.37301 1.38118 1.09826 0.85388 0.78755 0.78517 0.77642 1.19596 1.21324 1.18577 1.46152 1.14587 1.55820 1.17966 1.17516 0.82284 0.78293 0.86363 1.90777 1.52663 1.61601 1.41173 1.24216 1.02193 1.14332 1.01294 1.20446 0.95803 0.93350 0.97029 1.19770 0.99587 1.10154 0.94610 1.22702 0.83265 0.74015 0.90724 1.22229 1.06940 1.03607 0.91563 1.90576 1.38268 1.51621 1.58929 1.26954 0.95698 1.00132 1.06281 1.82911 1.13072 1.46807 0.98890 0.95628 0.93274 0.94232 0.90583 0.93638 0.92511 0.76466 0.85726 0.86739 0.87555 0.87593 0.74741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.89 8.51 71.98 0.61 -5.27 16 2 C -0.12 -6.01 5.45 30.59 0.17 -5.84 16 3 C 0.28 14.41 2.24 44.24 0.10 14.51 16 4 H 0.00 -0.02 7.58 -2.38 -0.02 -0.04 16 5 C -0.55 -28.88 8.73 25.60 0.22 -28.66 16 6 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 7 C 0.02 0.88 5.29 84.66 0.45 1.33 16 8 N -0.91 -52.15 11.29 21.45 0.24 -51.91 16 9 Si 0.97 41.28 29.54 68.60 2.03 43.30 16 10 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 12 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 13 N -0.70 -29.54 5.02 -449.98 -2.26 -31.79 16 14 C 0.57 24.24 6.35 86.47 0.55 24.79 16 15 O -0.58 -29.89 13.92 -4.27 -0.06 -29.95 16 16 C -0.30 -9.66 6.37 23.69 0.15 -9.50 16 17 C -0.03 -1.11 9.47 21.70 0.21 -0.90 16 18 C -0.23 -5.03 5.81 -21.15 -0.12 -5.15 16 19 C 0.41 8.77 7.23 27.85 0.20 8.97 16 20 C -0.19 -1.62 10.23 71.24 0.73 -0.89 16 21 O -0.51 -16.22 17.44 -3.20 -0.06 -16.27 16 22 C -0.15 -2.00 10.30 67.54 0.70 -1.30 16 23 S 0.32 5.83 22.08 -56.49 -1.25 4.58 16 24 H 0.02 1.28 7.84 -2.39 -0.02 1.26 16 25 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.04 1.81 5.64 -2.38 -0.01 1.80 16 27 H 0.08 4.20 5.95 -2.39 -0.01 4.19 16 28 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.27 14.38 8.31 -92.70 -0.77 13.61 16 30 H 0.40 14.13 7.61 -92.71 -0.71 13.42 16 31 H 0.12 4.70 7.95 -2.91 -0.02 4.68 16 32 H 0.11 0.16 6.01 -2.39 -0.01 0.15 16 33 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.11 0.76 8.14 -2.39 -0.02 0.75 16 35 H 0.24 0.37 6.55 -2.91 -0.02 0.36 16 Total: -1.00 -76.14 310.32 3.03 -73.11 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.42 Total: 16.84 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 3.96 Total: -7.91 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -2.02 Total: -83.70 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -0.12 Total: -46.22 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: 5.83 SS G_CDS: -1.25 Total: 4.58 kcal Total: -76.14 3.03 -73.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183907921.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.738 kcal (2) G-P(sol) polarization free energy of solvation -76.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds