Wall clock time and date at job start Tue Mar 31 2020 05:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42896 * 112.95056 * 48.40423 * 9 7 2 11 11 C 1.53948 * 113.74115 * 276.66959 * 9 7 2 12 12 N 1.47581 * 86.11831 * 222.05373 * 11 9 7 13 13 C 1.34781 * 134.48697 * 204.64135 * 12 11 9 14 14 O 1.21278 * 119.99565 * 179.97438 * 13 12 11 15 15 C 1.50691 * 120.00407 * 359.97438 * 13 12 11 16 16 C 1.53002 * 109.47382 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.47347 * 179.97438 * 16 15 13 18 18 C 1.38432 * 122.53828 * 89.99892 * 17 16 15 19 19 C 1.33386 * 114.91994 * 179.97438 * 18 17 16 20 20 S 1.75884 * 109.59707 * 0.02562 * 19 18 17 21 21 C 1.33389 * 122.54302 * 269.71202 * 17 16 15 22 22 C 1.47575 * 91.01727 * 24.63778 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96697 * 113.99744 * 309.67215 * 10 9 7 25 25 H 1.09002 * 113.76590 * 336.35388 * 11 9 7 26 26 H 1.08998 * 113.77136 * 107.74611 * 11 9 7 27 27 H 1.09006 * 109.47331 * 299.99811 * 15 13 12 28 28 H 1.09001 * 109.47313 * 59.99753 * 15 13 12 29 29 H 1.08998 * 109.47063 * 300.00090 * 16 15 13 30 30 H 1.09001 * 109.47010 * 59.99675 * 16 15 13 31 31 H 1.08001 * 122.53628 * 359.95728 * 18 17 16 32 32 H 1.07998 * 125.19900 * 180.02562 * 19 18 17 33 33 H 1.07999 * 125.19965 * 0.02681 * 21 17 16 34 34 H 1.08992 * 113.77450 * 221.06110 * 22 12 11 35 35 H 1.09008 * 113.87093 * 89.67321 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0683 -0.3212 0.9849 11 6 4.1319 -1.0294 -1.3993 12 7 5.0923 -2.0710 -0.9861 13 6 6.3443 -2.4028 -1.3591 14 8 6.9074 -3.3369 -0.8289 15 6 7.0442 -1.6131 -2.4348 16 6 8.4418 -2.1919 -2.6649 17 6 9.1415 -1.4026 -3.7411 18 6 9.9192 -0.2915 -3.4632 19 6 10.4681 0.2914 -4.5300 20 16 10.0007 -0.5804 -5.9844 21 6 9.0632 -1.7248 -5.0331 22 6 4.1314 -2.6033 -0.0006 23 1 -0.4850 0.8401 0.0004 24 1 3.7023 0.5737 0.9692 25 1 3.4725 -1.3369 -2.2110 26 1 4.5871 -0.0532 -1.5660 27 1 6.4701 -1.6706 -3.3597 28 1 7.1293 -0.5718 -2.1241 29 1 9.0157 -2.1341 -1.7400 30 1 8.3571 -3.2333 -2.9754 31 1 10.0697 0.0756 -2.4587 32 1 11.1025 1.1650 -4.5046 33 1 8.5070 -2.5593 -5.4339 34 1 4.5862 -2.8836 0.9494 35 1 3.4712 -3.3734 -0.3997 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186811526.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:07 Heat of formation + Delta-G solvation = -7.184602 kcal Electronic energy + Delta-G solvation = -19320.651978 eV Core-core repulsion = 16219.185814 eV Total energy + Delta-G solvation = -3101.466164 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.85138 -38.62279 -37.54884 -34.49980 -32.79335 -32.57225 -29.68389 -28.62881 -26.16794 -25.41048 -24.50073 -22.43400 -20.17262 -18.83901 -18.54557 -17.77706 -17.43117 -16.56497 -16.38322 -15.54310 -15.29096 -15.05706 -14.01894 -13.73490 -13.53320 -13.33886 -13.16587 -13.03227 -12.65147 -12.54500 -12.33967 -12.03825 -11.96323 -11.81528 -11.25923 -11.04437 -10.95009 -10.83172 -10.62562 -10.16251 -9.75155 -9.33567 -9.04671 -8.95322 -8.72135 -8.50787 -8.04297 -6.44981 -4.51081 0.84593 1.50481 1.82001 2.53151 2.96640 2.97906 3.07338 3.12079 3.42174 3.99998 4.58706 4.70616 4.78704 5.01448 5.09055 5.12074 5.19473 5.38826 5.42733 5.57672 5.64689 5.75433 5.92173 5.99960 6.05795 6.10655 6.24290 6.30846 6.33500 6.40883 6.44947 6.58466 7.17611 7.99567 8.28681 8.47610 8.58840 8.61263 9.12582 10.67310 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023862 B = 0.003861 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.141669 B = 7250.554748 C = 7854.323269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.080 3.920 3 Si 0.859 3.141 4 H -0.266 1.266 5 H -0.257 1.257 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.092 0.908 9 C 0.195 3.805 10 O -0.553 6.553 11 C 0.063 3.937 12 N -0.635 5.635 13 C 0.529 3.471 14 O -0.561 6.561 15 C -0.128 4.128 16 C -0.044 4.044 17 C -0.097 4.097 18 C -0.128 4.128 19 C -0.212 4.212 20 S 0.080 5.920 21 C -0.209 4.209 22 C 0.126 3.874 23 H 0.271 0.729 24 H 0.351 0.649 25 H 0.095 0.905 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.141 0.859 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.075 0.925 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.041 1.772 -10.254 19.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.125 4.125 3 Si 0.688 3.312 4 H -0.193 1.193 5 H -0.183 1.183 6 H -0.210 1.210 7 C -0.575 4.575 8 H 0.109 0.891 9 C 0.154 3.846 10 O -0.364 6.364 11 C -0.060 4.060 12 N -0.368 5.368 13 C 0.319 3.681 14 O -0.442 6.442 15 C -0.168 4.168 16 C -0.084 4.084 17 C -0.109 4.109 18 C -0.158 4.158 19 C -0.348 4.348 20 S 0.344 5.656 21 C -0.345 4.345 22 C 0.004 3.996 23 H 0.081 0.919 24 H 0.203 0.797 25 H 0.113 0.887 26 H 0.086 0.914 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.159 0.841 32 H 0.181 0.819 33 H 0.182 0.818 34 H 0.093 0.907 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 17.002 1.012 -11.466 20.532 hybrid contribution -0.351 1.429 1.199 1.898 sum 16.651 2.440 -10.268 19.714 Atomic orbital electron populations 1.69857 1.06079 1.27642 1.47584 1.25010 0.94913 0.99006 0.93593 0.87329 0.80305 0.84369 0.79208 1.19270 1.18252 1.20990 1.21245 0.87699 0.95718 1.52816 0.89052 1.20559 0.92584 0.87643 0.83834 1.86479 1.67518 1.24235 1.58149 1.24614 0.88697 0.90408 1.02298 1.50133 1.12310 1.34316 1.40083 1.20207 0.80633 0.84036 0.83230 1.90645 1.65681 1.30859 1.56974 1.21546 0.96036 1.00754 0.98450 1.20056 0.93510 0.98384 0.96454 1.19038 1.00014 0.97343 0.94489 1.20181 0.99104 0.96438 1.00121 1.25579 1.08062 1.05795 0.95331 1.84224 1.47294 1.23314 1.10787 1.25501 1.07377 1.05239 0.96342 1.23283 0.87517 0.97119 0.91679 0.91868 0.79679 0.88710 0.91362 0.89187 0.89173 0.90057 0.90212 0.84100 0.81946 0.81825 0.90651 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.25 13.96 55.43 0.77 -23.48 16 2 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.86 18.56 24.34 -169.99 -4.14 14.42 16 4 H -0.27 -5.64 7.06 56.52 0.40 -5.24 16 5 H -0.26 -5.15 5.28 56.52 0.30 -4.85 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.54 -13.67 9.20 -34.44 -0.32 -13.99 16 8 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 9 C 0.19 4.36 1.06 -90.84 -0.10 4.27 16 10 O -0.55 -12.84 13.32 -35.23 -0.47 -13.30 16 11 C 0.06 1.22 7.20 -2.97 -0.02 1.20 16 12 N -0.63 -12.42 3.61 -178.31 -0.64 -13.07 16 13 C 0.53 9.81 8.06 -10.99 -0.09 9.73 16 14 O -0.56 -11.96 16.71 5.56 0.09 -11.87 16 15 C -0.13 -1.79 5.43 -27.89 -0.15 -1.94 16 16 C -0.04 -0.55 4.76 -27.88 -0.13 -0.69 16 17 C -0.10 -1.09 5.06 -106.25 -0.54 -1.63 16 18 C -0.13 -1.34 9.98 -41.21 -0.41 -1.75 16 19 C -0.21 -1.98 11.23 29.04 0.33 -1.66 16 20 S 0.08 0.75 23.34 -107.50 -2.51 -1.76 16 21 C -0.21 -2.17 10.98 29.04 0.32 -1.85 16 22 C 0.13 2.60 8.23 -2.97 -0.02 2.57 16 23 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 24 H 0.35 7.75 3.31 45.56 0.15 7.90 16 25 H 0.09 1.74 8.09 -51.93 -0.42 1.32 16 26 H 0.07 1.26 6.98 -51.93 -0.36 0.89 16 27 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 30 H 0.08 1.03 8.07 -51.93 -0.42 0.61 16 31 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 32 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.09 1.81 8.09 -51.92 -0.42 1.39 16 LS Contribution 308.97 15.07 4.66 4.66 Total: -1.00 -29.63 308.97 -7.56 -37.19 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -4.09 Total: 10.97 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.23 Total: -3.76 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.13 Total: -36.54 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.38 Total: -25.17 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -4.14 Total: 14.42 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.51 Total: -1.76 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.63 -7.56 -37.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186811526.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.003 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds