Wall clock time and date at job start Tue Mar 31 2020 06:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46863 * 2 1 4 4 C 1.50699 * 109.47261 * 240.00221 * 2 1 3 5 5 O 1.21278 * 120.00084 * 240.00713 * 4 2 1 6 6 N 1.34776 * 119.99861 * 59.99291 * 4 2 1 7 7 C 1.47067 * 136.06190 * 359.64209 * 6 4 2 8 8 C 1.53744 * 87.89017 * 152.95620 * 7 6 4 9 9 O 1.42900 * 114.39609 * 272.67096 * 8 7 6 10 10 C 1.50701 * 114.26682 * 139.79182 * 8 7 6 11 11 H 1.08005 * 120.00089 * 266.47360 * 10 8 7 12 12 C 1.37879 * 120.00175 * 86.47442 * 10 8 7 13 13 N 1.31518 * 119.99782 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 120.00093 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47026 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47051 * 119.99935 * 14 12 10 17 17 H 1.48498 * 109.46960 * 239.99907 * 14 12 10 18 18 C 1.47068 * 136.05438 * 180.02562 * 6 4 2 19 19 C 1.50702 * 109.47554 * 119.99899 * 2 1 3 20 20 C 1.33388 * 125.20547 * 240.00595 * 19 2 1 21 21 C 1.38421 * 114.92066 * 180.29144 * 20 19 2 22 22 C 1.33395 * 114.92147 * 359.48238 * 21 20 19 23 23 S 1.75885 * 125.19995 * 60.01949 * 19 2 1 24 24 H 1.08999 * 109.47316 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46765 * 299.99775 * 1 2 3 26 26 H 1.08997 * 109.47114 * 59.99841 * 1 2 3 27 27 H 1.09004 * 113.46480 * 267.69301 * 7 6 4 28 28 H 1.08997 * 113.46728 * 38.12198 * 7 6 4 29 29 H 0.96700 * 114.00533 * 273.58727 * 9 8 7 30 30 H 0.97001 * 119.99435 * 180.02562 * 13 12 10 31 31 H 1.08995 * 113.47041 * 321.87127 * 18 6 4 32 32 H 1.08996 * 113.46868 * 92.25320 * 18 6 4 33 33 H 1.08002 * 122.53671 * 0.02562 * 20 19 2 34 34 H 1.08001 * 122.54223 * 179.72513 * 21 20 19 35 35 H 1.07998 * 125.20353 * 180.21324 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4545 7 6 0.9104 0.8649 -2.9893 8 6 1.8014 0.8259 -4.2417 9 8 2.9902 1.6128 -4.1450 10 6 1.0580 1.0266 -5.5372 11 1 0.7076 0.1718 -6.0967 12 6 0.8253 2.3014 -6.0081 13 7 1.2525 3.3422 -5.3270 14 14 -0.0967 2.5501 -7.6136 15 1 -0.4666 1.2290 -8.1818 16 1 -1.3269 3.3425 -7.3603 17 1 0.7708 3.2767 -8.5752 18 6 1.9857 -0.6452 -3.8434 19 6 2.0325 -0.7104 1.2305 20 6 2.8025 -0.1646 2.1730 21 6 3.1453 -1.0143 3.2104 22 6 2.6448 -2.2472 3.1160 23 16 1.6934 -2.3862 1.6432 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.1284 0.6005 -3.1873 28 1 1.0092 1.7847 -2.4129 29 1 2.8706 2.5388 -4.3966 30 1 1.0884 4.2390 -5.6582 31 1 3.0008 -1.0121 -3.9947 32 1 1.2307 -1.3081 -4.2660 33 1 3.1369 0.8614 2.1277 34 1 3.7676 -0.7018 4.0360 35 1 2.8033 -3.0401 3.8319 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186834092.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:21 Heat of formation + Delta-G solvation = -13.227131 kcal Electronic energy + Delta-G solvation = -19771.639349 eV Core-core repulsion = 16669.911161 eV Total energy + Delta-G solvation = -3101.728188 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.81298 -38.10301 -37.08725 -34.09006 -33.62054 -32.22054 -29.04961 -28.11047 -25.57059 -25.11702 -24.46923 -22.68848 -20.12320 -19.24720 -18.45660 -17.47129 -16.80187 -16.27439 -15.45620 -15.32790 -15.04452 -14.61837 -14.14660 -13.70843 -13.20540 -13.06310 -12.74144 -12.61391 -12.48745 -12.21771 -12.07643 -11.75853 -11.62524 -11.46956 -11.33362 -11.10292 -11.00087 -10.50241 -10.49608 -10.28912 -9.62243 -9.22525 -8.81768 -8.53544 -8.40944 -8.20158 -7.86634 -6.43826 -4.54059 1.12817 1.80880 2.20437 2.83747 3.11096 3.15896 3.21061 3.24714 3.57665 4.15499 4.67736 4.78012 4.91456 5.12315 5.17992 5.35766 5.52560 5.61548 5.65241 5.76603 5.83146 5.93993 6.11831 6.17934 6.21733 6.37127 6.41232 6.45984 6.56788 6.62858 6.65387 7.07742 7.59755 7.77405 8.46854 8.51078 8.72892 9.17615 9.46030 10.62867 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.041659 B = 0.003947 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.959179 B = 7092.111031 C = 7144.808479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.037 4.037 3 H 0.111 0.889 4 C 0.537 3.463 5 O -0.551 6.551 6 N -0.632 5.632 7 C 0.071 3.929 8 C 0.240 3.760 9 O -0.571 6.571 10 C -0.533 4.533 11 H 0.073 0.927 12 C 0.072 3.928 13 N -0.898 5.898 14 Si 0.909 3.091 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.280 1.280 18 C 0.107 3.893 19 C -0.144 4.144 20 C -0.146 4.146 21 C -0.134 4.134 22 C -0.232 4.232 23 S 0.135 5.865 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.394 0.606 30 H 0.273 0.727 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.495 -3.991 12.132 13.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.061 4.061 3 H 0.129 0.871 4 C 0.325 3.675 5 O -0.430 6.430 6 N -0.365 5.365 7 C -0.052 4.052 8 C 0.198 3.802 9 O -0.384 6.384 10 C -0.571 4.571 11 H 0.091 0.909 12 C -0.130 4.130 13 N -0.539 5.539 14 Si 0.736 3.264 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.015 4.015 19 C -0.262 4.262 20 C -0.177 4.177 21 C -0.165 4.165 22 C -0.368 4.368 23 S 0.400 5.600 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.250 0.750 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.637 -6.126 11.924 13.662 hybrid contribution 0.135 1.967 -0.194 1.982 sum -2.502 -4.159 11.729 12.694 Atomic orbital electron populations 1.21852 0.91944 1.02811 1.03420 1.19735 0.97526 0.99948 0.88842 0.87146 1.19762 0.80859 0.84025 0.82844 1.90672 1.39451 1.26946 1.85970 1.49660 1.50639 1.31846 1.04341 1.24274 0.96863 0.87658 0.96401 1.19592 0.83146 0.86546 0.90934 1.86050 1.33621 1.28102 1.90632 1.21482 1.35957 0.93221 1.06476 0.90867 1.25079 0.94737 0.95551 0.97664 1.69270 1.46576 0.99020 1.39021 0.86261 0.79259 0.78543 0.82368 1.19401 1.20641 1.20607 1.23330 1.00781 0.99300 0.78079 1.24001 1.05015 0.97328 0.99845 1.20061 1.00938 1.01616 0.95051 1.20038 1.02904 0.93211 1.00368 1.25648 1.07115 1.01490 1.02536 1.84226 1.49923 1.10080 1.15747 0.92220 0.91288 0.90677 0.90016 0.91714 0.74965 0.91612 0.91583 0.89717 0.84519 0.84692 0.82306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.00 37.16 0.33 -1.60 16 2 C -0.04 -0.60 2.98 -92.92 -0.28 -0.88 16 3 H 0.11 1.68 8.08 -51.93 -0.42 1.26 16 4 C 0.54 10.86 7.37 -10.99 -0.08 10.78 16 5 O -0.55 -12.66 16.03 5.56 0.09 -12.58 16 6 N -0.63 -13.12 3.64 -185.05 -0.67 -13.80 16 7 C 0.07 1.46 6.15 -8.38 -0.05 1.41 16 8 C 0.24 5.64 1.58 -91.12 -0.14 5.49 16 9 O -0.57 -14.58 13.55 -35.23 -0.48 -15.05 16 10 C -0.53 -13.05 8.70 -34.44 -0.30 -13.35 16 11 H 0.07 1.75 7.81 -52.48 -0.41 1.34 16 12 C 0.07 1.75 5.40 -17.82 -0.10 1.65 16 13 N -0.90 -22.22 11.01 55.43 0.61 -21.61 16 14 Si 0.91 19.00 29.54 -169.99 -5.02 13.98 16 15 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 16 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 18 C 0.11 2.32 8.02 -8.50 -0.07 2.26 16 19 C -0.14 -2.23 4.60 -36.00 -0.17 -2.39 16 20 C -0.15 -2.03 10.01 -41.21 -0.41 -2.45 16 21 C -0.13 -1.66 10.18 -41.21 -0.42 -2.08 16 22 C -0.23 -2.87 11.23 29.04 0.33 -2.55 16 23 S 0.14 1.98 22.18 -107.50 -2.38 -0.41 16 24 H 0.06 0.81 8.00 -51.93 -0.42 0.40 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 1.04 6.33 -51.93 -0.33 0.71 16 27 H 0.08 1.58 8.06 -51.93 -0.42 1.16 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.39 10.12 6.32 45.56 0.29 10.41 16 30 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 31 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.08 1.68 8.10 -51.93 -0.42 1.25 16 33 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.16 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 312.10 15.07 4.70 4.70 Total: -1.00 -28.16 312.10 -8.30 -36.47 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -3.80 Total: 12.00 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -1.36 Total: -3.71 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: -0.06 Total: -35.40 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.39 Total: -27.63 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.38 Total: -0.41 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.16 -8.30 -36.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186834092.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.240 kcal (2) G-P(sol) polarization free energy of solvation -28.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds