Wall clock time and date at job start Tue Mar 31 2020 06:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.55061 * 2 1 4 4 C 1.53300 * 109.51308 * 239.87524 * 2 1 3 5 5 N 1.47146 * 108.38169 * 187.77036 * 4 2 1 6 6 C 1.34778 * 120.98408 * 230.55399 * 5 4 2 7 7 O 1.21686 * 119.99688 * 355.24428 * 6 5 4 8 8 C 1.46374 * 120.00362 * 175.24446 * 6 5 4 9 9 H 1.08005 * 119.99790 * 7.86900 * 8 6 5 10 10 C 1.40049 * 120.00136 * 187.87595 * 8 6 5 11 11 N 1.30670 * 120.00075 * 359.97438 * 10 8 6 12 12 Si 1.86794 * 119.99919 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47552 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.47268 * 120.00000 * 12 10 8 15 15 H 1.48501 * 109.46995 * 239.99478 * 12 10 8 16 16 C 1.47155 * 118.03745 * 50.54059 * 5 4 2 17 17 C 1.53295 * 108.38136 * 309.45967 * 16 5 4 18 18 H 1.08997 * 109.51486 * 292.32685 * 17 16 5 19 19 C 1.50701 * 109.51070 * 172.22607 * 17 16 5 20 20 C 1.38427 * 122.53989 * 100.00190 * 19 17 16 21 21 C 1.33383 * 114.92338 * 179.97438 * 20 19 17 22 22 S 1.75888 * 109.59223 * 359.97438 * 21 20 19 23 23 C 1.33384 * 122.53745 * 279.70641 * 19 17 16 24 24 O 1.42961 * 109.22168 * 52.30409 * 17 16 5 25 25 H 1.09008 * 109.47141 * 180.12429 * 1 2 3 26 26 H 1.08995 * 109.47473 * 300.12557 * 1 2 3 27 27 H 1.09000 * 109.47220 * 60.12422 * 1 2 3 28 28 H 1.08997 * 109.67866 * 68.04989 * 4 2 1 29 29 H 1.08994 * 109.67887 * 307.50066 * 4 2 1 30 30 H 0.96997 * 120.00467 * 180.02562 * 11 10 8 31 31 H 1.09000 * 109.67887 * 69.18145 * 16 5 4 32 32 H 1.09000 * 109.67951 * 189.70164 * 16 5 4 33 33 H 1.08008 * 122.53780 * 359.95289 * 20 19 17 34 34 H 1.08000 * 125.20790 * 180.02562 * 21 20 19 35 35 H 1.07996 * 125.20831 * 0.02940 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0420 -0.7252 -1.2498 5 7 3.5011 -0.8761 -1.1336 6 6 4.3193 -0.5032 -2.1376 7 8 3.8512 -0.1151 -3.1916 8 6 5.7710 -0.5652 -1.9602 9 1 6.1878 -1.0269 -1.0773 10 6 6.6193 -0.0259 -2.9353 11 7 6.1149 0.5323 -4.0037 12 14 8.4717 -0.1044 -2.7085 13 1 8.7851 -0.7812 -1.4244 14 1 9.0760 -0.8666 -3.8307 15 1 9.0270 1.2728 -2.6900 16 6 4.0407 -1.4457 0.1113 17 6 3.4312 -0.6855 1.2947 18 1 3.8036 0.3389 1.3001 19 6 3.8154 -1.3673 2.5826 20 6 4.8440 -0.9110 3.3887 21 6 5.0536 -1.6290 4.4930 22 16 3.9089 -2.9630 4.5552 23 6 3.1862 -2.4530 3.0349 24 8 2.0075 -0.6764 1.1654 25 1 -0.3634 -1.0277 0.0022 26 1 -0.3634 0.5157 0.8888 27 1 -0.3634 0.5119 -0.8911 28 1 1.8030 -0.1398 -2.1376 29 1 1.5757 -1.7078 -1.3209 30 1 6.7024 0.9056 -4.6793 31 1 3.7756 -2.5010 0.1772 32 1 5.1252 -1.3381 0.1244 33 1 5.4326 -0.0396 3.1419 34 1 5.8098 -1.4225 5.2359 35 1 2.3604 -2.9447 2.5423 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188198242.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:14 Heat of formation + Delta-G solvation = -40.674605 kcal Electronic energy + Delta-G solvation = -20078.074928 eV Core-core repulsion = 16975.156528 eV Total energy + Delta-G solvation = -3102.918400 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.62628 -37.68943 -36.60241 -33.40783 -32.80296 -32.36591 -29.63465 -27.76674 -27.13220 -24.99207 -24.06464 -22.15901 -20.78878 -19.18683 -18.66796 -17.57613 -16.70731 -16.14634 -15.94040 -15.12511 -14.82142 -14.56879 -14.21527 -13.66219 -13.43489 -12.94757 -12.77292 -12.66337 -12.28143 -12.26994 -12.09181 -11.68009 -11.63408 -11.43343 -11.12325 -11.01989 -10.92700 -10.65817 -10.28418 -10.20900 -10.02863 -9.48396 -8.91865 -8.73531 -8.38169 -7.65884 -7.25839 -6.26863 -4.71386 1.08363 1.71148 2.02370 2.72880 3.08724 3.17372 3.21352 3.92245 4.02491 4.41421 4.48978 5.03001 5.15159 5.24023 5.43116 5.45248 5.48226 5.50635 5.67857 5.70190 5.78211 5.87466 6.02252 6.05104 6.16841 6.26265 6.32648 6.39826 6.42782 6.54825 6.63779 7.39136 7.44697 7.56240 8.04204 8.26467 8.95840 9.32915 10.49520 10.67947 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014992 B = 0.006095 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.173992 B = 4592.730531 C = 6178.731484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.075 3.925 3 H 0.059 0.941 4 C 0.093 3.907 5 N -0.645 5.645 6 C 0.560 3.440 7 O -0.575 6.575 8 C -0.544 4.544 9 H 0.074 0.926 10 C 0.088 3.912 11 N -0.768 5.768 12 Si 0.906 3.094 13 H -0.263 1.263 14 H -0.275 1.275 15 H -0.276 1.276 16 C 0.104 3.896 17 C 0.138 3.862 18 H 0.070 0.930 19 C -0.094 4.094 20 C -0.119 4.119 21 C -0.215 4.215 22 S 0.074 5.926 23 C -0.177 4.177 24 O -0.379 6.379 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.269 0.731 31 H 0.051 0.949 32 H 0.102 0.898 33 H 0.143 0.857 34 H 0.163 0.837 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.209 -3.486 15.204 16.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.017 3.983 3 H 0.077 0.923 4 C -0.032 4.032 5 N -0.384 5.384 6 C 0.367 3.633 7 O -0.458 6.458 8 C -0.580 4.580 9 H 0.091 0.909 10 C -0.132 4.132 11 N -0.396 5.396 12 Si 0.730 3.270 13 H -0.186 1.186 14 H -0.200 1.200 15 H -0.201 1.201 16 C -0.021 4.021 17 C 0.077 3.923 18 H 0.088 0.912 19 C -0.106 4.106 20 C -0.149 4.149 21 C -0.350 4.350 22 S 0.337 5.663 23 C -0.313 4.313 24 O -0.299 6.299 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.120 0.880 33 H 0.161 0.839 34 H 0.181 0.819 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.809 -4.450 15.568 16.891 hybrid contribution 1.374 1.184 -0.952 2.048 sum -3.436 -3.266 14.616 15.366 Atomic orbital electron populations 1.21693 0.93093 1.02648 1.02188 1.22510 0.94545 0.95587 0.85704 0.92339 1.21847 0.83769 0.99640 0.97899 1.48339 1.04333 1.68672 1.17045 1.18292 0.86999 0.76701 0.81342 1.90592 1.77009 1.51619 1.26557 1.20979 0.89199 1.40982 1.06884 0.90850 1.25721 1.00312 0.93084 0.94049 1.70008 1.36033 1.27008 1.06577 0.86336 0.82898 0.78508 0.79209 1.18649 1.20048 1.20095 1.22042 1.00702 0.95772 0.83586 1.20977 0.81907 0.98460 0.91004 0.91237 1.18668 0.97633 0.96801 0.97519 1.20057 0.98922 1.01851 0.94100 1.25470 1.05599 1.00531 1.03416 1.84147 1.29466 1.30496 1.22162 1.25447 1.05313 1.01310 0.99228 1.87832 1.20331 1.77894 1.43845 0.91960 0.92140 0.90966 0.89082 0.93246 0.92036 0.93116 0.87951 0.83889 0.81904 0.81592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.57 37.16 0.36 -1.45 16 2 C 0.07 1.26 3.40 -26.58 -0.09 1.16 16 3 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.09 1.85 5.91 -3.53 -0.02 1.83 16 5 N -0.65 -14.89 3.02 -173.94 -0.53 -15.42 16 6 C 0.56 15.90 7.62 -12.99 -0.10 15.80 16 7 O -0.58 -18.50 14.56 5.20 0.08 -18.43 16 8 C -0.54 -15.06 8.86 -35.63 -0.32 -15.38 16 9 H 0.07 1.86 5.73 -52.48 -0.30 1.56 16 10 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 11 N -0.77 -22.69 11.86 55.55 0.66 -22.03 16 12 Si 0.91 19.77 29.56 -169.99 -5.02 14.75 16 13 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 14 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 15 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 16 C 0.10 2.01 5.83 -3.53 -0.02 1.99 16 17 C 0.14 2.32 3.08 -27.73 -0.09 2.23 16 18 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 19 C -0.09 -1.37 4.88 -106.25 -0.52 -1.89 16 20 C -0.12 -1.53 9.95 -41.21 -0.41 -1.94 16 21 C -0.22 -2.41 11.23 29.04 0.33 -2.08 16 22 S 0.07 0.83 23.34 -107.50 -2.51 -1.68 16 23 C -0.18 -2.38 10.56 29.04 0.31 -2.07 16 24 O -0.38 -6.43 9.62 -35.23 -0.34 -6.77 16 25 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.09 1.98 7.12 -51.93 -0.37 1.61 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.10 2.05 5.41 -51.93 -0.28 1.77 16 33 H 0.14 1.68 8.06 -52.48 -0.42 1.26 16 34 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.17 2.15 8.05 -52.49 -0.42 1.73 16 LS Contribution 307.29 15.07 4.63 4.63 Total: -1.00 -33.26 307.29 -8.01 -41.27 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.31 Total: 3.14 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -0.67 Total: 0.54 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.13 Total: -37.45 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.26 Total: -25.20 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.26 -8.01 -41.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188198242.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.591 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds