Wall clock time and date at job start Tue Mar 31 2020 06:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.55061 * 2 1 4 4 C 1.53300 * 109.51308 * 239.87524 * 2 1 3 5 5 N 1.47146 * 108.38169 * 187.77036 * 4 2 1 6 6 C 1.34778 * 120.98408 * 230.55399 * 5 4 2 7 7 O 1.21686 * 119.99688 * 355.24428 * 6 5 4 8 8 C 1.46374 * 120.00362 * 175.24446 * 6 5 4 9 9 H 1.08005 * 119.99790 * 7.86900 * 8 6 5 10 10 C 1.40049 * 120.00136 * 187.87595 * 8 6 5 11 11 N 1.30670 * 120.00075 * 359.97438 * 10 8 6 12 12 Si 1.86794 * 119.99919 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47552 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.47268 * 120.00000 * 12 10 8 15 15 H 1.48501 * 109.46995 * 239.99478 * 12 10 8 16 16 C 1.47155 * 118.03745 * 50.54059 * 5 4 2 17 17 C 1.53295 * 108.38136 * 309.45967 * 16 5 4 18 18 H 1.08997 * 109.51486 * 292.32685 * 17 16 5 19 19 C 1.50701 * 109.51070 * 172.22607 * 17 16 5 20 20 C 1.38427 * 122.53989 * 100.00190 * 19 17 16 21 21 C 1.33383 * 114.92338 * 179.97438 * 20 19 17 22 22 S 1.75888 * 109.59223 * 359.97438 * 21 20 19 23 23 C 1.33384 * 122.53745 * 279.70641 * 19 17 16 24 24 O 1.42961 * 109.22168 * 52.30409 * 17 16 5 25 25 H 1.09008 * 109.47141 * 180.12429 * 1 2 3 26 26 H 1.08995 * 109.47473 * 300.12557 * 1 2 3 27 27 H 1.09000 * 109.47220 * 60.12422 * 1 2 3 28 28 H 1.08997 * 109.67866 * 68.04989 * 4 2 1 29 29 H 1.08994 * 109.67887 * 307.50066 * 4 2 1 30 30 H 0.96997 * 120.00467 * 180.02562 * 11 10 8 31 31 H 1.09000 * 109.67887 * 69.18145 * 16 5 4 32 32 H 1.09000 * 109.67951 * 189.70164 * 16 5 4 33 33 H 1.08008 * 122.53780 * 359.95289 * 20 19 17 34 34 H 1.08000 * 125.20790 * 180.02562 * 21 20 19 35 35 H 1.07996 * 125.20831 * 0.02940 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0420 -0.7252 -1.2498 5 7 3.5011 -0.8761 -1.1336 6 6 4.3193 -0.5032 -2.1376 7 8 3.8512 -0.1151 -3.1916 8 6 5.7710 -0.5652 -1.9602 9 1 6.1878 -1.0269 -1.0773 10 6 6.6193 -0.0259 -2.9353 11 7 6.1149 0.5323 -4.0037 12 14 8.4717 -0.1044 -2.7085 13 1 8.7851 -0.7812 -1.4244 14 1 9.0760 -0.8666 -3.8307 15 1 9.0270 1.2728 -2.6900 16 6 4.0407 -1.4457 0.1113 17 6 3.4312 -0.6855 1.2947 18 1 3.8036 0.3389 1.3001 19 6 3.8154 -1.3673 2.5826 20 6 4.8440 -0.9110 3.3887 21 6 5.0536 -1.6290 4.4930 22 16 3.9089 -2.9630 4.5552 23 6 3.1862 -2.4530 3.0349 24 8 2.0075 -0.6764 1.1654 25 1 -0.3634 -1.0277 0.0022 26 1 -0.3634 0.5157 0.8888 27 1 -0.3634 0.5119 -0.8911 28 1 1.8030 -0.1398 -2.1376 29 1 1.5757 -1.7078 -1.3209 30 1 6.7024 0.9056 -4.6793 31 1 3.7756 -2.5010 0.1772 32 1 5.1252 -1.3381 0.1244 33 1 5.4326 -0.0396 3.1419 34 1 5.8098 -1.4225 5.2359 35 1 2.3604 -2.9447 2.5423 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188198242.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:14 Heat of formation + Delta-G solvation = -62.662172 kcal Electronic energy + Delta-G solvation = -20079.028380 eV Core-core repulsion = 16975.156528 eV Total energy + Delta-G solvation = -3103.871852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.09959 -39.15038 -38.23054 -35.26746 -34.68514 -33.91759 -30.76327 -29.18491 -28.95698 -26.66700 -25.44284 -23.36604 -22.35192 -21.00935 -19.73278 -18.74522 -18.36823 -17.91215 -17.54431 -16.63652 -16.41681 -16.05334 -15.87695 -15.31685 -14.65173 -14.55386 -13.99212 -13.84593 -13.73702 -13.50486 -13.38002 -13.20908 -13.11733 -13.05304 -12.78500 -12.61180 -12.24366 -12.16747 -12.00564 -11.75799 -11.48886 -11.04011 -10.94835 -9.89781 -9.68838 -9.38369 -9.04674 -8.34171 -6.89213 0.11426 0.78006 1.07745 1.37812 1.38773 1.56359 1.67523 2.20390 2.40410 2.60533 2.70348 3.51469 3.76549 3.95830 4.00921 4.08148 4.12184 4.27926 4.36497 4.46770 4.57601 4.58776 4.71525 4.77572 4.86870 4.91786 4.99547 5.12448 5.25576 5.33632 5.41453 5.54361 5.62486 6.03366 6.17332 6.27297 6.83314 7.29625 8.38047 8.61698 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014992 B = 0.006095 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.173992 B = 4592.730531 C = 6178.731484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.081 3.919 3 H 0.046 0.954 4 C 0.090 3.910 5 N -0.650 5.650 6 C 0.542 3.458 7 O -0.628 6.628 8 C -0.567 4.567 9 H 0.093 0.907 10 C 0.031 3.969 11 N -0.821 5.821 12 Si 0.994 3.006 13 H -0.244 1.244 14 H -0.269 1.269 15 H -0.266 1.266 16 C 0.105 3.895 17 C 0.146 3.854 18 H 0.059 0.941 19 C -0.110 4.110 20 C -0.141 4.141 21 C -0.205 4.205 22 S 0.121 5.879 23 C -0.192 4.192 24 O -0.375 6.375 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.275 0.725 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.149 0.851 34 H 0.193 0.807 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.241 -4.394 18.050 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.023 3.977 3 H 0.064 0.936 4 C -0.034 4.034 5 N -0.387 5.387 6 C 0.349 3.651 7 O -0.516 6.516 8 C -0.603 4.603 9 H 0.110 0.890 10 C -0.185 4.185 11 N -0.451 5.451 12 Si 0.813 3.187 13 H -0.167 1.167 14 H -0.194 1.194 15 H -0.191 1.191 16 C -0.019 4.019 17 C 0.085 3.915 18 H 0.077 0.923 19 C -0.123 4.123 20 C -0.171 4.171 21 C -0.340 4.340 22 S 0.384 5.616 23 C -0.328 4.328 24 O -0.295 6.295 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.166 0.834 34 H 0.210 0.790 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.875 -5.383 18.483 19.637 hybrid contribution 1.002 1.394 -1.766 2.463 sum -2.873 -3.989 16.717 17.425 Atomic orbital electron populations 1.21681 0.89744 1.03749 1.03596 1.22499 0.96991 0.94189 0.84054 0.93625 1.22016 0.82212 1.00320 0.98805 1.48212 1.05413 1.67812 1.17289 1.18701 0.88204 0.76569 0.81633 1.90537 1.78071 1.54054 1.28890 1.21475 0.89460 1.41421 1.07983 0.88960 1.26977 1.06576 0.91798 0.93105 1.70172 1.38750 1.28182 1.07970 0.85020 0.74688 0.79054 0.79914 1.16726 1.19404 1.19095 1.22163 1.00335 0.96426 0.82950 1.20802 0.81598 0.97741 0.91327 0.92348 1.18570 0.99091 0.97656 0.96992 1.20132 0.99221 1.02909 0.94845 1.25870 1.05524 0.99620 1.03030 1.84028 1.28291 1.29543 1.19742 1.25591 1.05417 1.01088 1.00661 1.87858 1.20397 1.77727 1.43470 0.91003 0.90399 0.89895 0.91600 0.92049 0.91458 0.92245 0.88847 0.83378 0.78989 0.81580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.57 71.98 0.69 -2.50 16 2 C 0.08 2.72 3.40 30.69 0.10 2.82 16 3 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 4 C 0.09 3.71 5.91 86.36 0.51 4.22 16 5 N -0.65 -31.04 3.02 -822.45 -2.48 -33.53 16 6 C 0.54 32.12 7.62 86.36 0.66 32.78 16 7 O -0.63 -42.69 14.56 -4.30 -0.06 -42.75 16 8 C -0.57 -32.13 8.86 24.83 0.22 -31.91 16 9 H 0.09 4.70 5.73 -2.91 -0.02 4.68 16 10 C 0.03 1.71 5.50 85.30 0.47 2.17 16 11 N -0.82 -50.18 11.86 21.84 0.26 -49.92 16 12 Si 0.99 40.52 29.56 68.60 2.03 42.54 16 13 H -0.24 -9.14 7.11 99.48 0.71 -8.43 16 14 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 15 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 16 C 0.11 4.11 5.83 86.35 0.50 4.61 16 17 C 0.15 4.91 3.08 29.95 0.09 5.00 16 18 H 0.06 2.07 8.09 -2.39 -0.02 2.05 16 19 C -0.11 -3.07 4.88 -20.92 -0.10 -3.18 16 20 C -0.14 -3.38 9.95 21.22 0.21 -3.17 16 21 C -0.21 -3.93 11.23 66.72 0.75 -3.18 16 22 S 0.12 2.33 23.34 -56.49 -1.32 1.01 16 23 C -0.19 -4.78 10.56 66.72 0.70 -4.08 16 24 O -0.37 -12.46 9.62 -148.98 -1.43 -13.89 16 25 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.07 3.03 7.12 -2.39 -0.02 3.01 16 29 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.28 15.17 8.29 -92.71 -0.77 14.40 16 31 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.09 3.78 5.41 -2.39 -0.01 3.77 16 33 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 34 H 0.19 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.17 4.04 8.05 -2.91 -0.02 4.02 16 Total: -1.00 -74.98 307.29 2.90 -72.08 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 1.10 Total: 20.86 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 4.81 Total: 3.59 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -2.22 Total: -83.45 kcal Atomic # 8 Polarization: -55.15 SS G_CDS: -1.50 Total: -56.64 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.54 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -1.32 Total: 1.01 kcal Total: -74.98 2.90 -72.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188198242.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.421 kcal (2) G-P(sol) polarization free energy of solvation -74.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds