Wall clock time and date at job start Tue Mar 31 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21309 * 120.00125 * 2 1 4 4 C 1.46671 * 119.99925 * 180.02562 * 2 1 3 5 5 C 1.40123 * 120.14035 * 359.71921 * 4 2 1 6 6 C 1.36492 * 120.02945 * 179.76487 * 5 4 2 7 7 C 1.39184 * 120.32507 * 0.51765 * 6 5 4 8 8 O 1.35664 * 119.86409 * 179.71779 * 7 6 5 9 9 C 1.42894 * 116.99802 * 0.02562 * 8 7 6 10 10 C 1.50700 * 109.47114 * 180.02562 * 9 8 7 11 11 O 1.21293 * 120.00141 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00053 * 180.02562 * 10 9 8 13 13 C 1.37102 * 119.99902 * 180.02562 * 12 10 9 14 14 H 1.08000 * 119.99757 * 359.97438 * 13 12 10 15 15 C 1.38952 * 119.99865 * 179.97438 * 13 12 10 16 16 N 1.31408 * 119.99864 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99942 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46842 * 89.99636 * 17 15 13 19 19 H 1.48492 * 109.47217 * 209.99940 * 17 15 13 20 20 H 1.48502 * 109.46913 * 330.00164 * 17 15 13 21 21 C 1.38917 * 120.27473 * 359.73723 * 7 6 5 22 22 C 1.38012 * 119.96568 * 359.97438 * 21 7 6 23 23 F 1.35096 * 120.15940 * 179.97438 * 22 21 7 24 24 H 1.09002 * 109.47152 * 269.99622 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.99723 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.99703 * 1 2 3 27 27 H 1.07997 * 119.98421 * 0.02579 * 5 4 2 28 28 H 1.08003 * 119.84143 * 180.23396 * 6 5 4 29 29 H 1.09004 * 109.47033 * 299.99802 * 9 8 7 30 30 H 1.08998 * 109.47309 * 59.99898 * 9 8 7 31 31 H 0.96999 * 120.00010 * 359.97438 * 12 10 9 32 32 H 0.97001 * 119.99867 * 180.02562 * 16 15 13 33 33 H 1.07995 * 120.01455 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2404 -1.2702 -0.0006 5 6 1.5427 -2.4854 0.0048 6 6 2.2274 -3.6662 -0.0006 7 6 3.6193 -3.6714 -0.0006 8 8 4.2903 -4.8505 -0.0002 9 6 3.5047 -6.0440 -0.0003 10 6 4.4153 -7.2448 0.0008 11 8 5.6187 -7.0934 0.0012 12 7 3.8925 -8.4870 0.0004 13 6 4.7209 -9.5794 0.0020 14 1 5.7925 -9.4445 0.0031 15 6 4.1819 -10.8601 0.0020 16 7 2.8781 -11.0242 0.0011 17 14 5.3107 -12.3486 0.0035 18 1 5.6087 -12.7423 1.4039 19 1 4.6443 -13.4758 -0.6966 20 1 6.5764 -12.0105 -0.6957 21 6 4.3241 -2.4744 -0.0006 22 6 3.6436 -1.2737 -0.0011 23 9 4.3252 -0.1072 -0.0006 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 -0.8900 -0.5139 26 1 -0.3633 0.8900 -0.5138 27 1 0.4628 -2.4878 0.0090 28 1 1.6866 -4.6010 -0.0002 29 1 2.8754 -6.0649 0.8895 30 1 2.8760 -6.0651 -0.8905 31 1 2.9301 -8.6082 -0.0003 32 1 2.5018 -11.9183 0.0015 33 1 5.4040 -2.4833 -0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224725581.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:36 Heat of formation + Delta-G solvation = -129.537265 kcal Electronic energy + Delta-G solvation = -20556.709080 eV Core-core repulsion = 16883.724129 eV Total energy + Delta-G solvation = -3672.984950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.06126 -40.50400 -39.40125 -38.20147 -36.88079 -34.11845 -32.11618 -31.46973 -30.71373 -29.50335 -28.10742 -24.83579 -23.82582 -22.72276 -20.31502 -19.63952 -18.72098 -18.13355 -17.04174 -16.74306 -16.42759 -16.26404 -15.73895 -15.53110 -14.95649 -14.90280 -14.78460 -14.38743 -14.26194 -13.79844 -13.56682 -13.04137 -12.85586 -12.49906 -12.43175 -12.36622 -12.13341 -11.68813 -11.30702 -11.22553 -10.94352 -10.50245 -10.37524 -9.93778 -9.69282 -9.20204 -8.63435 -8.51679 -8.17384 -6.58809 -4.00752 0.39737 0.93790 2.16999 2.79964 3.07397 3.18983 3.25410 3.37923 3.62363 3.79054 4.00428 4.10080 4.34795 4.62624 4.76517 4.78597 4.94540 5.02343 5.03680 5.10539 5.12090 5.24017 5.46583 5.50773 5.64062 5.82062 5.84684 5.93663 6.02111 6.39137 7.17372 7.32661 7.40177 7.84779 8.38659 8.98840 9.29118 9.78896 10.58307 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.044319 B = 0.002922 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.637238 B = 9581.051161 C =10192.241221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.396 3.604 3 O -0.458 6.458 4 C -0.263 4.263 5 C -0.002 4.002 6 C -0.238 4.238 7 C 0.206 3.794 8 O -0.271 6.271 9 C 0.047 3.953 10 C 0.437 3.563 11 O -0.573 6.573 12 N -0.551 5.551 13 C -0.303 4.303 14 H 0.106 0.894 15 C 0.026 3.974 16 N -0.897 5.897 17 Si 0.934 3.066 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.268 1.268 21 C -0.211 4.211 22 C 0.200 3.800 23 F -0.114 7.114 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.394 0.606 32 H 0.274 0.726 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.204 14.624 0.046 17.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.275 3.725 3 O -0.335 6.335 4 C -0.265 4.265 5 C -0.020 4.020 6 C -0.256 4.256 7 C 0.157 3.843 8 O -0.181 6.181 9 C -0.032 4.032 10 C 0.221 3.779 11 O -0.457 6.457 12 N -0.188 5.188 13 C -0.432 4.432 14 H 0.124 0.876 15 C -0.176 4.176 16 N -0.538 5.538 17 Si 0.760 3.240 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.192 1.192 21 C -0.230 4.230 22 C 0.180 3.820 23 F -0.092 7.092 24 H 0.116 0.884 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.162 0.838 28 H 0.163 0.837 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.228 0.772 32 H 0.084 0.916 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.942 15.083 0.038 17.046 hybrid contribution -0.290 -0.930 0.020 0.974 sum -8.232 14.153 0.059 16.373 Atomic orbital electron populations 1.22210 0.93550 1.04898 1.04771 1.22147 0.91697 0.87151 0.71470 1.90603 1.72006 1.34090 1.36760 1.20427 0.92243 0.96496 1.17369 1.20843 1.00238 0.89887 0.91012 1.21164 0.93021 1.00307 1.11135 1.19130 0.90399 0.86267 0.88507 1.86197 1.34930 1.11465 1.85471 1.22702 0.94359 0.83329 1.02805 1.19221 0.88769 0.83529 0.86350 1.90590 1.14745 1.85289 1.55052 1.41685 1.09772 1.03594 1.63758 1.19734 0.92155 0.83075 1.48264 0.87588 1.25305 0.96399 0.99192 0.96727 1.69599 1.10354 1.24245 1.49563 0.85796 0.79739 0.79873 0.78576 1.20199 1.20753 1.19230 1.20272 1.02029 0.88491 1.12221 1.17451 0.88657 0.81117 0.94754 1.91586 1.79519 1.45585 1.92465 0.88448 0.89499 0.89417 0.83753 0.83730 0.89725 0.89715 0.77209 0.91565 0.83012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.22 9.74 36.01 0.35 -0.87 16 2 C 0.40 4.32 7.21 -30.90 -0.22 4.10 16 3 O -0.46 -6.78 16.08 5.53 0.09 -6.69 16 4 C -0.26 -2.96 5.88 -105.00 -0.62 -3.57 16 5 C 0.00 -0.01 9.30 -39.50 -0.37 -0.38 16 6 C -0.24 -2.48 8.96 -39.86 -0.36 -2.84 16 7 C 0.21 2.81 6.70 -38.98 -0.26 2.55 16 8 O -0.27 -4.61 9.65 -38.60 -0.37 -4.98 16 9 C 0.05 0.74 5.21 36.01 0.19 0.93 16 10 C 0.44 9.84 7.86 -10.99 -0.09 9.75 16 11 O -0.57 -15.50 16.07 -14.36 -0.23 -15.73 16 12 N -0.55 -13.04 5.29 -10.96 -0.06 -13.10 16 13 C -0.30 -8.04 9.68 -14.93 -0.14 -8.19 16 14 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 15 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 16 N -0.90 -22.98 13.05 55.50 0.72 -22.25 16 17 Si 0.93 20.06 29.55 -169.99 -5.02 15.04 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 21 C -0.21 -2.82 9.96 -39.41 -0.39 -3.22 16 22 C 0.20 2.66 7.29 -38.88 -0.28 2.37 16 23 F -0.11 -1.68 15.55 2.25 0.04 -1.64 16 24 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.09 0.35 6.46 -51.93 -0.34 0.01 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.14 0.72 6.35 -52.49 -0.33 0.39 16 28 H 0.15 1.22 6.26 -52.48 -0.33 0.89 16 29 H 0.08 1.10 7.65 -51.93 -0.40 0.71 16 30 H 0.08 1.11 7.65 -51.93 -0.40 0.71 16 31 H 0.39 8.63 7.90 -40.82 -0.32 8.31 16 32 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 33 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 301.92 15.07 4.55 4.55 Total: -1.00 -32.90 301.92 -5.47 -38.37 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -2.89 Total: 5.23 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -2.29 Total: 1.21 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.67 Total: -35.35 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.51 Total: -27.40 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.90 -5.47 -38.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224725581.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.168 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds