Wall clock time and date at job start Tue Mar 31 2020 06:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50704 * 119.99614 * 2 1 4 4 H 1.09003 * 109.47308 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.46951 * 239.99736 * 3 2 1 6 6 N 1.46506 * 109.47271 * 120.00043 * 3 2 1 7 7 S 1.65595 * 120.00108 * 215.00011 * 6 3 2 8 8 O 1.42106 * 106.40041 * 311.46064 * 7 6 3 9 9 O 1.42094 * 106.40303 * 178.53915 * 7 6 3 10 10 C 1.76208 * 107.21711 * 64.99631 * 7 6 3 11 11 C 1.38630 * 119.74372 * 90.00149 * 10 7 6 12 12 C 1.37623 * 120.24117 * 180.27329 * 11 10 7 13 13 C 1.40707 * 119.74849 * 359.52215 * 12 11 10 14 14 C 1.41400 * 120.24843 * 180.22492 * 13 12 11 15 15 H 1.07994 * 120.00480 * 204.52708 * 14 13 12 16 16 C 1.39950 * 119.99509 * 24.53120 * 14 13 12 17 17 N 1.30821 * 119.99991 * 17.72383 * 16 14 13 18 18 Si 1.86800 * 119.99756 * 197.72017 * 16 14 13 19 19 H 1.48499 * 109.47128 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46931 * 119.99981 * 18 16 14 21 21 H 1.48490 * 109.47155 * 239.99623 * 18 16 14 22 22 C 1.40715 * 119.51064 * 0.47652 * 13 12 11 23 23 C 1.37618 * 119.74364 * 359.74989 * 22 13 12 24 24 H 1.08000 * 119.99589 * 180.02562 * 1 2 3 25 25 H 1.07994 * 120.00596 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.00596 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.47071 * 180.02562 * 5 3 2 28 28 H 1.08997 * 109.47364 * 299.99776 * 5 3 2 29 29 H 1.08999 * 109.47445 * 60.00084 * 5 3 2 30 30 H 0.97003 * 119.99721 * 34.99647 * 6 3 2 31 31 H 1.08001 * 119.88189 * 0.02562 * 11 10 7 32 32 H 1.08002 * 120.12205 * 179.72192 * 12 11 10 33 33 H 0.97005 * 119.99803 * 180.02562 * 17 16 14 34 34 H 1.08002 * 120.12804 * 179.73261 * 22 13 12 35 35 H 1.08002 * 119.87235 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3550 2.1337 -0.0005 5 6 2.9430 1.3862 -1.2492 6 7 2.9057 1.3829 1.1962 7 16 3.1489 2.8400 1.9444 8 8 3.5045 3.7613 0.9226 9 8 3.9691 2.5786 3.0749 10 6 1.5903 3.3705 2.5723 11 6 1.2056 3.0080 3.8539 12 6 -0.0118 3.4120 4.3525 13 6 -0.8628 4.2042 3.5599 14 6 -2.1139 4.6291 4.0633 15 1 -2.9146 4.8760 3.3820 16 6 -2.3146 4.7298 5.4447 17 7 -1.2872 4.7746 6.2534 18 14 -4.0494 4.8001 6.1338 19 1 -5.0280 4.7323 5.0189 20 1 -4.2646 3.6523 7.0511 21 1 -4.2348 6.0709 6.8792 22 6 -0.4619 4.5660 2.2605 23 6 0.7580 4.1468 1.7808 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5401 0.9352 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 3.4884 2.3301 -1.2490 28 1 3.6514 0.5578 -1.2492 29 1 2.3165 1.3284 -2.1393 30 1 3.3209 0.5807 1.5499 31 1 1.8620 2.4031 4.4618 32 1 -0.3115 3.1248 5.3495 33 1 -1.4263 4.8440 7.2109 34 1 -1.1091 5.1701 1.6419 35 1 1.0680 4.4236 0.7839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229066521.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:47 Heat of formation + Delta-G solvation = -51.877328 kcal Electronic energy + Delta-G solvation = -19819.934933 eV Core-core repulsion = 16716.530747 eV Total energy + Delta-G solvation = -3103.404186 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -37.59529 -37.08037 -36.32510 -35.09722 -34.04125 -32.12134 -30.26026 -29.47904 -29.07617 -25.82190 -23.00380 -21.49930 -21.20259 -20.08495 -18.75856 -17.62589 -17.01545 -16.51069 -16.27981 -15.47149 -14.59688 -14.21424 -14.01319 -13.81087 -13.41126 -13.23484 -12.84265 -12.45983 -12.23385 -12.19056 -11.83740 -11.73657 -11.44757 -11.40396 -11.35288 -11.26190 -11.19808 -10.88441 -10.62125 -10.41288 -9.78825 -9.66653 -9.50815 -9.44469 -9.06755 -7.96060 -7.70800 -7.14166 -4.80287 1.25483 2.24887 2.32757 2.87135 2.89064 2.92254 2.94868 3.65854 3.81512 4.25215 4.53042 4.79214 5.10080 5.18814 5.37733 5.42303 5.47543 5.61432 5.85709 5.95931 6.04912 6.12158 6.27051 6.33122 6.64289 6.67727 6.70897 6.81724 6.91931 7.04243 7.31603 7.35104 7.42767 7.63692 7.76826 7.96522 8.32008 8.51097 8.64854 9.77399 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023576 B = 0.005119 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.368529 B = 5468.840478 C = 6032.978917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.164 4.164 3 C 0.182 3.818 4 H 0.089 0.911 5 C -0.168 4.168 6 N -1.119 6.119 7 S 2.692 3.308 8 O -0.984 6.984 9 O -0.985 6.985 10 C -0.787 4.787 11 C -0.013 4.013 12 C -0.183 4.183 13 C 0.139 3.861 14 C -0.436 4.436 15 H 0.088 0.912 16 C 0.072 3.928 17 N -0.765 5.765 18 Si 0.917 3.083 19 H -0.256 1.256 20 H -0.268 1.268 21 H -0.270 1.270 22 C -0.238 4.238 23 C -0.002 4.002 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.110 0.890 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.409 0.591 31 H 0.103 0.897 32 H 0.122 0.878 33 H 0.289 0.711 34 H 0.100 0.900 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.753 -7.534 -7.416 10.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.183 4.183 3 C 0.075 3.925 4 H 0.107 0.893 5 C -0.227 4.227 6 N -0.874 5.874 7 S 2.790 3.210 8 O -0.974 6.974 9 O -0.976 6.976 10 C -0.883 4.883 11 C -0.034 4.034 12 C -0.204 4.204 13 C 0.136 3.864 14 C -0.463 4.463 15 H 0.106 0.894 16 C -0.150 4.150 17 N -0.387 5.387 18 Si 0.740 3.260 19 H -0.180 1.180 20 H -0.192 1.192 21 H -0.195 1.195 22 C -0.258 4.258 23 C -0.022 4.022 24 H 0.117 0.883 25 H 0.121 0.879 26 H 0.128 0.872 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.242 0.758 31 H 0.121 0.879 32 H 0.140 0.860 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.614 -6.900 -7.196 10.100 hybrid contribution -1.326 -0.357 0.808 1.594 sum 0.287 -7.257 -6.388 9.673 Atomic orbital electron populations 1.23967 0.95897 1.02347 0.98643 1.23012 0.96043 0.97869 1.01400 1.19771 0.91443 0.96640 0.84665 0.89259 1.22301 1.00244 1.03190 0.96942 1.55874 1.64208 1.27470 1.39841 1.01281 0.74890 0.72222 0.72565 1.93481 1.83228 1.61707 1.58997 1.93493 1.67710 1.84950 1.51458 1.29147 1.25154 1.27029 1.06925 1.20247 0.95510 0.95450 0.92144 1.21336 0.95214 1.02547 1.01277 1.17855 0.91706 0.86177 0.90706 1.19964 0.98162 1.36287 0.91865 0.89418 1.26148 0.99691 0.91961 0.97244 1.69835 1.32580 1.30469 1.05820 0.86111 0.81276 0.78993 0.79655 1.17980 1.19248 1.19513 1.21018 0.97623 1.08532 0.98661 1.20173 0.93103 0.92630 0.96320 0.88327 0.87929 0.87181 0.90871 0.92384 0.91768 0.75819 0.87929 0.86036 0.89986 0.88206 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 14.32 29.02 0.42 -1.57 16 2 C -0.16 -1.92 9.02 -36.02 -0.32 -2.24 16 3 C 0.18 2.47 3.14 -69.08 -0.22 2.25 16 4 H 0.09 1.30 6.86 -51.93 -0.36 0.95 16 5 C -0.17 -2.01 9.50 37.16 0.35 -1.65 16 6 N -1.12 -16.66 5.46 -5.87 -0.03 -16.69 16 7 S 2.69 52.09 5.64 -107.50 -0.61 51.48 16 8 O -0.98 -20.66 16.52 -57.17 -0.94 -21.60 16 9 O -0.99 -21.46 17.26 -57.17 -0.99 -22.45 16 10 C -0.79 -17.31 5.84 -39.29 -0.23 -17.54 16 11 C -0.01 -0.31 9.49 -39.66 -0.38 -0.69 16 12 C -0.18 -4.60 8.70 -38.87 -0.34 -4.93 16 13 C 0.14 3.51 5.57 -106.83 -0.60 2.91 16 14 C -0.44 -10.62 9.06 -37.74 -0.34 -10.96 16 15 H 0.09 2.02 7.91 -52.49 -0.41 1.60 16 16 C 0.07 1.65 5.14 -17.34 -0.09 1.57 16 17 N -0.76 -18.40 10.95 55.55 0.61 -17.79 16 18 Si 0.92 16.94 29.59 -169.99 -5.03 11.91 16 19 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 20 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 21 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 22 C -0.24 -5.55 9.80 -38.87 -0.38 -5.93 16 23 C 0.00 -0.05 8.86 -39.66 -0.35 -0.40 16 24 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 25 H 0.10 1.28 7.83 -52.49 -0.41 0.87 16 26 H 0.11 1.09 8.06 -52.49 -0.42 0.66 16 27 H 0.07 0.99 7.64 -51.93 -0.40 0.59 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.41 5.12 8.83 -34.47 -0.30 4.82 16 31 H 0.10 2.24 7.60 -52.49 -0.40 1.85 16 32 H 0.12 3.09 6.16 -52.49 -0.32 2.76 16 33 H 0.29 6.21 8.30 -40.82 -0.34 5.87 16 34 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 35 H 0.10 2.04 7.60 -52.49 -0.40 1.64 16 LS Contribution 314.36 15.07 4.74 4.74 Total: -1.00 -29.60 314.36 -8.98 -38.58 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -4.25 Total: 11.01 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: -2.48 Total: -39.19 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.58 Total: -34.48 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -1.93 Total: -44.05 kcal Atomic # 14 Polarization: 16.94 SS G_CDS: -5.03 Total: 11.91 kcal Atomic # 16 Polarization: 52.09 SS G_CDS: -0.61 Total: 51.48 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.60 -8.98 -38.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229066521.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.298 kcal (2) G-P(sol) polarization free energy of solvation -29.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds