Wall clock time and date at job start Tue Mar 31 2020 05:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34016 * 124.49813 * 2 1 4 4 C 1.37205 * 115.14601 * 179.97438 * 3 2 1 5 5 C 1.37181 * 113.24146 * 0.02562 * 4 3 2 6 6 C 1.41236 * 125.47817 * 179.97438 * 5 4 3 7 7 O 1.21446 * 120.00144 * 359.97071 * 6 5 4 8 8 C 1.50704 * 119.99934 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.47187 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47033 * 179.97438 * 9 8 6 11 11 O 1.21296 * 120.00306 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99969 * 180.02562 * 10 9 8 13 13 C 1.46495 * 119.99590 * 0.02562 * 12 10 9 14 14 C 1.37095 * 120.00069 * 179.97438 * 12 10 9 15 15 H 1.08000 * 119.99792 * 24.40053 * 14 12 10 16 16 C 1.38946 * 119.99976 * 204.39604 * 14 12 10 17 17 N 1.31411 * 120.00107 * 12.64480 * 16 14 12 18 18 Si 1.86809 * 119.99747 * 192.64302 * 16 14 12 19 19 H 1.48496 * 109.46930 * 60.00342 * 18 16 14 20 20 H 1.48502 * 109.46703 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47228 * 300.00085 * 18 16 14 22 22 S 1.70612 * 124.50092 * 179.97438 * 2 1 3 23 23 H 1.09004 * 109.47589 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47746 * 300.02777 * 1 2 3 25 25 H 1.09004 * 109.46894 * 60.03038 * 1 2 3 26 26 H 1.08001 * 122.43030 * 359.97438 * 3 2 1 27 27 H 1.08003 * 123.37650 * 179.97438 * 4 3 2 28 28 H 1.08999 * 109.47412 * 299.99965 * 8 6 5 29 29 H 1.09001 * 109.46888 * 60.00243 * 8 6 5 30 30 H 1.08999 * 109.47169 * 300.00424 * 9 8 6 31 31 H 1.09001 * 109.46755 * 60.00471 * 9 8 6 32 32 H 1.08997 * 109.47321 * 85.86413 * 13 12 10 33 33 H 1.09009 * 109.46794 * 205.86075 * 13 12 10 34 34 H 1.08992 * 109.47397 * 325.85876 * 13 12 10 35 35 H 0.97004 * 119.99606 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2660 1.1045 0.0000 4 6 3.6198 0.8815 0.0006 5 6 3.9491 -0.4502 0.0005 6 6 5.2624 -0.9698 0.0004 7 8 6.2140 -0.2153 -0.0001 8 6 5.4828 -2.4607 0.0009 9 6 6.9844 -2.7542 0.0001 10 6 7.2048 -4.2450 0.0012 11 8 6.2544 -4.9986 0.0020 12 7 8.4581 -4.7409 0.0013 13 6 9.6059 -3.8307 0.0009 14 6 8.6586 -6.0971 0.0028 15 1 7.8948 -6.7563 -0.3825 16 6 9.8445 -6.6235 0.5000 17 7 10.6632 -5.8617 1.1900 18 14 10.2749 -8.4143 0.1875 19 1 10.3612 -8.6546 -1.2753 20 1 11.5822 -8.7265 0.8189 21 1 9.2233 -9.2853 0.7711 22 16 2.4733 -1.4060 0.0006 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5142 0.8896 25 1 -0.3633 0.5134 -0.8903 26 1 1.8428 2.0981 -0.0004 27 1 4.3526 1.6749 0.0002 28 1 5.0278 -2.8950 0.8911 29 1 5.0275 -2.8955 -0.8889 30 1 7.4391 -2.3199 -0.8903 31 1 7.4401 -2.3193 0.8897 32 1 9.8447 -3.5465 1.0257 33 1 10.4652 -4.3298 -0.4473 34 1 9.3622 -2.9388 -0.5761 35 1 11.4910 -6.2293 1.5373 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263657693.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:04 Heat of formation + Delta-G solvation = -41.842364 kcal Electronic energy + Delta-G solvation = -18861.035622 eV Core-core repulsion = 15758.066584 eV Total energy + Delta-G solvation = -3102.969038 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.76529 -38.36083 -37.64931 -34.69523 -32.59403 -32.15340 -31.42442 -28.35808 -26.38099 -25.34937 -24.02882 -23.22141 -20.86021 -18.95258 -18.50876 -17.35624 -16.77579 -16.08841 -15.80524 -15.56832 -14.77727 -14.43294 -14.25624 -13.98290 -13.90071 -13.87211 -13.38817 -12.74184 -12.61108 -12.24872 -12.12858 -11.94142 -11.58092 -11.43398 -11.31386 -11.16073 -10.95853 -10.77164 -10.67487 -10.37617 -10.17850 -9.68386 -8.95773 -8.82053 -8.76301 -8.34498 -7.60848 -6.27652 -3.84184 0.17590 1.34012 1.75318 2.06460 2.92932 3.21653 3.26832 3.30769 3.95360 4.10491 4.27270 4.47493 4.86180 5.01923 5.12520 5.13980 5.16486 5.19425 5.31981 5.54641 5.55109 5.58693 5.81065 5.90900 6.09204 6.14546 6.18602 6.34933 6.44845 6.52534 6.92718 7.26680 7.60425 7.61838 8.19092 8.53506 9.23059 9.47985 10.04101 10.77243 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.040351 B = 0.003287 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.742921 B = 8515.333096 C = 9119.687749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.200 4.200 3 C -0.166 4.166 4 C -0.047 4.047 5 C -0.303 4.303 6 C 0.420 3.580 7 O -0.454 6.454 8 C -0.148 4.148 9 C -0.118 4.118 10 C 0.446 3.554 11 O -0.595 6.595 12 N -0.446 5.446 13 C 0.111 3.889 14 C -0.308 4.308 15 H 0.097 0.903 16 C 0.030 3.970 17 N -0.882 5.882 18 Si 0.926 3.074 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.273 1.273 22 S 0.242 5.758 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.141 0.859 27 H 0.151 0.849 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.028 0.972 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.491 13.077 -2.262 20.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.320 4.320 3 C -0.197 4.197 4 C -0.080 4.080 5 C -0.421 4.421 6 C 0.299 3.701 7 O -0.331 6.331 8 C -0.186 4.186 9 C -0.158 4.158 10 C 0.234 3.766 11 O -0.480 6.480 12 N -0.165 5.165 13 C -0.033 4.033 14 C -0.436 4.436 15 H 0.115 0.885 16 C -0.173 4.173 17 N -0.522 5.522 18 Si 0.753 3.247 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.198 1.198 22 S 0.511 5.489 23 H 0.089 0.911 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.159 0.841 27 H 0.169 0.831 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.550 11.489 -2.165 19.455 hybrid contribution 0.700 0.848 0.005 1.100 sum -14.850 12.338 -2.161 19.427 Atomic orbital electron populations 1.20402 0.87467 1.03293 1.03297 1.24537 1.01792 0.98746 1.06938 1.19918 0.92801 0.99558 1.07402 1.20960 0.96206 0.95430 0.95409 1.24239 0.99761 0.98100 1.20039 1.20347 0.86032 0.92027 0.71664 1.90570 1.43544 1.61888 1.37141 1.21768 0.99077 0.92131 1.05632 1.21292 0.94844 0.95814 1.03858 1.20059 0.83742 0.89207 0.83566 1.90493 1.40920 1.60393 1.56231 1.43572 1.03823 1.06487 1.62589 1.21489 0.90142 0.90986 1.00689 1.19600 1.03124 0.81717 1.39137 0.88523 1.25352 0.96840 0.99921 0.95204 1.69997 1.12174 1.36691 1.33305 0.86001 0.77650 0.82379 0.78662 1.19946 1.20982 1.19805 1.83364 0.93589 1.06059 1.65875 0.91121 0.90240 0.90247 0.84103 0.83135 0.87872 0.87953 0.89988 0.89758 0.92992 0.90794 0.95359 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.52 10.33 36.00 0.37 -0.15 16 2 C -0.20 -1.82 6.28 -35.79 -0.22 -2.05 16 3 C -0.17 -1.57 9.99 -41.44 -0.41 -1.99 16 4 C -0.05 -0.54 9.95 -40.34 -0.40 -0.94 16 5 C -0.30 -3.97 6.23 -38.83 -0.24 -4.22 16 6 C 0.42 6.55 6.93 -33.17 -0.23 6.32 16 7 O -0.45 -8.08 16.36 5.41 0.09 -7.99 16 8 C -0.15 -2.49 4.28 -27.88 -0.12 -2.61 16 9 C -0.12 -2.30 3.59 -27.88 -0.10 -2.40 16 10 C 0.45 11.09 7.63 -10.99 -0.08 11.01 16 11 O -0.59 -16.36 15.70 5.54 0.09 -16.27 16 12 N -0.45 -11.82 3.01 -122.20 -0.37 -12.19 16 13 C 0.11 2.59 8.44 59.84 0.51 3.09 16 14 C -0.31 -8.78 9.24 -14.94 -0.14 -8.92 16 15 H 0.10 2.85 7.45 -52.49 -0.39 2.46 16 16 C 0.03 0.81 5.04 -17.47 -0.09 0.72 16 17 N -0.88 -24.12 10.83 55.50 0.60 -23.52 16 18 Si 0.93 21.08 29.57 -169.99 -5.03 16.05 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 S 0.24 2.60 22.35 -107.50 -2.40 0.20 16 23 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 27 H 0.15 1.63 8.02 -52.48 -0.42 1.20 16 28 H 0.10 1.72 8.10 -51.93 -0.42 1.30 16 29 H 0.10 1.67 8.10 -51.93 -0.42 1.25 16 30 H 0.08 1.52 7.37 -51.93 -0.38 1.14 16 31 H 0.08 1.63 8.06 -51.93 -0.42 1.21 16 32 H 0.05 1.24 7.82 -51.93 -0.41 0.84 16 33 H 0.07 1.80 6.80 -51.92 -0.35 1.45 16 34 H 0.03 0.56 6.61 -51.93 -0.34 0.22 16 35 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 316.18 15.07 4.76 4.76 Total: -1.00 -32.62 316.18 -7.80 -40.42 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -4.38 Total: 0.67 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.16 Total: -2.13 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.23 Total: -35.71 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: 0.18 Total: -24.27 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.40 Total: 0.20 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.62 -7.80 -40.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263657693.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.424 kcal (2) G-P(sol) polarization free energy of solvation -32.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds