Wall clock time and date at job start Tue Mar 31 2020 05:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34016 * 124.49813 * 2 1 4 4 C 1.37205 * 115.14601 * 179.97438 * 3 2 1 5 5 C 1.37181 * 113.24146 * 0.02562 * 4 3 2 6 6 C 1.41236 * 125.47817 * 179.97438 * 5 4 3 7 7 O 1.21446 * 120.00144 * 359.97071 * 6 5 4 8 8 C 1.50704 * 119.99934 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.47187 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47033 * 179.97438 * 9 8 6 11 11 O 1.21296 * 120.00306 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99969 * 180.02562 * 10 9 8 13 13 C 1.46495 * 119.99590 * 0.02562 * 12 10 9 14 14 C 1.37095 * 120.00069 * 179.97438 * 12 10 9 15 15 H 1.08000 * 119.99792 * 24.40053 * 14 12 10 16 16 C 1.38946 * 119.99976 * 204.39604 * 14 12 10 17 17 N 1.31411 * 120.00107 * 12.64480 * 16 14 12 18 18 Si 1.86809 * 119.99747 * 192.64302 * 16 14 12 19 19 H 1.48496 * 109.46930 * 60.00342 * 18 16 14 20 20 H 1.48502 * 109.46703 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47228 * 300.00085 * 18 16 14 22 22 S 1.70612 * 124.50092 * 179.97438 * 2 1 3 23 23 H 1.09004 * 109.47589 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47746 * 300.02777 * 1 2 3 25 25 H 1.09004 * 109.46894 * 60.03038 * 1 2 3 26 26 H 1.08001 * 122.43030 * 359.97438 * 3 2 1 27 27 H 1.08003 * 123.37650 * 179.97438 * 4 3 2 28 28 H 1.08999 * 109.47412 * 299.99965 * 8 6 5 29 29 H 1.09001 * 109.46888 * 60.00243 * 8 6 5 30 30 H 1.08999 * 109.47169 * 300.00424 * 9 8 6 31 31 H 1.09001 * 109.46755 * 60.00471 * 9 8 6 32 32 H 1.08997 * 109.47321 * 85.86413 * 13 12 10 33 33 H 1.09009 * 109.46794 * 205.86075 * 13 12 10 34 34 H 1.08992 * 109.47397 * 325.85876 * 13 12 10 35 35 H 0.97004 * 119.99606 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2660 1.1045 0.0000 4 6 3.6198 0.8815 0.0006 5 6 3.9491 -0.4502 0.0005 6 6 5.2624 -0.9698 0.0004 7 8 6.2140 -0.2153 -0.0001 8 6 5.4828 -2.4607 0.0009 9 6 6.9844 -2.7542 0.0001 10 6 7.2048 -4.2450 0.0012 11 8 6.2544 -4.9986 0.0020 12 7 8.4581 -4.7409 0.0013 13 6 9.6059 -3.8307 0.0009 14 6 8.6586 -6.0971 0.0028 15 1 7.8948 -6.7563 -0.3825 16 6 9.8445 -6.6235 0.5000 17 7 10.6632 -5.8617 1.1900 18 14 10.2749 -8.4143 0.1875 19 1 10.3612 -8.6546 -1.2753 20 1 11.5822 -8.7265 0.8189 21 1 9.2233 -9.2853 0.7711 22 16 2.4733 -1.4060 0.0006 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5142 0.8896 25 1 -0.3633 0.5134 -0.8903 26 1 1.8428 2.0981 -0.0004 27 1 4.3526 1.6749 0.0002 28 1 5.0278 -2.8950 0.8911 29 1 5.0275 -2.8955 -0.8889 30 1 7.4391 -2.3199 -0.8903 31 1 7.4401 -2.3193 0.8897 32 1 9.8447 -3.5465 1.0257 33 1 10.4652 -4.3298 -0.4473 34 1 9.3622 -2.9388 -0.5761 35 1 11.4910 -6.2293 1.5373 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263657693.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:03 Heat of formation + Delta-G solvation = -61.022677 kcal Electronic energy + Delta-G solvation = -18861.867343 eV Core-core repulsion = 15758.066584 eV Total energy + Delta-G solvation = -3103.800759 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.04122 -40.15971 -38.58813 -36.72600 -34.06701 -33.51158 -32.96447 -29.46193 -28.21168 -26.94106 -25.50488 -24.27521 -22.03347 -20.43544 -19.79753 -18.92373 -18.49820 -17.52774 -17.04826 -16.96434 -16.50289 -15.92956 -15.79546 -15.43127 -15.01813 -14.86485 -14.27813 -14.18409 -13.99969 -13.48535 -13.28672 -13.21943 -13.17110 -12.91995 -12.88688 -12.64640 -12.61903 -12.36913 -12.15317 -12.08671 -11.77692 -11.01144 -10.91920 -10.37682 -9.68488 -9.65794 -9.58710 -8.34451 -6.00420 -0.73982 0.50189 0.93301 1.14728 1.39473 1.40950 1.52188 1.92240 2.00508 2.27489 2.85785 3.08223 3.32904 3.77007 3.85443 4.07825 4.15034 4.25597 4.31560 4.47335 4.55006 4.67520 4.74818 4.75010 4.84191 4.96379 5.01646 5.07122 5.09703 5.21861 5.33114 5.41216 5.43865 6.09105 6.42998 6.46976 7.14670 7.45185 8.00982 8.68939 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.040351 B = 0.003287 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.742921 B = 8515.333096 C = 9119.687749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.178 4.178 3 C -0.175 4.175 4 C -0.036 4.036 5 C -0.345 4.345 6 C 0.432 3.568 7 O -0.486 6.486 8 C -0.144 4.144 9 C -0.105 4.105 10 C 0.438 3.562 11 O -0.628 6.628 12 N -0.464 5.464 13 C 0.121 3.879 14 C -0.348 4.348 15 H 0.075 0.925 16 C -0.005 4.005 17 N -0.899 5.899 18 Si 0.992 3.008 19 H -0.266 1.266 20 H -0.271 1.271 21 H -0.275 1.275 22 S 0.236 5.764 23 H 0.076 0.924 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.170 0.830 27 H 0.154 0.846 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.844 14.080 -2.472 22.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.299 4.299 3 C -0.205 4.205 4 C -0.070 4.070 5 C -0.462 4.462 6 C 0.313 3.687 7 O -0.367 6.367 8 C -0.181 4.181 9 C -0.145 4.145 10 C 0.228 3.772 11 O -0.516 6.516 12 N -0.183 5.183 13 C -0.022 4.022 14 C -0.476 4.476 15 H 0.092 0.908 16 C -0.206 4.206 17 N -0.537 5.537 18 Si 0.815 3.185 19 H -0.191 1.191 20 H -0.195 1.195 21 H -0.200 1.200 22 S 0.505 5.495 23 H 0.095 0.905 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.188 0.812 27 H 0.171 0.829 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.899 12.510 -2.374 21.159 hybrid contribution 0.986 0.589 0.092 1.153 sum -15.913 13.099 -2.282 20.737 Atomic orbital electron populations 1.20595 0.84930 1.04336 1.04916 1.25014 1.03319 0.97612 1.03937 1.20169 0.91801 1.01047 1.07444 1.21211 0.97475 0.94810 0.93483 1.24002 0.99256 0.99263 1.23698 1.20166 0.86971 0.90841 0.70699 1.90552 1.44628 1.62055 1.39461 1.21713 0.96992 0.93708 1.05734 1.21194 0.97124 0.91660 1.04564 1.20924 0.82907 0.91271 0.82118 1.90453 1.41825 1.61903 1.57385 1.43858 1.05114 1.06430 1.62860 1.21423 0.88855 0.91449 1.00507 1.19631 1.03782 0.82865 1.41289 0.90759 1.26164 0.96017 1.04198 0.94242 1.70075 1.12327 1.38358 1.32944 0.85018 0.77604 0.76930 0.78906 1.19089 1.19504 1.20006 1.83397 0.93050 1.06962 1.66101 0.90478 0.88497 0.88444 0.81244 0.82859 0.88124 0.87727 0.88649 0.89365 0.93975 0.92206 0.91890 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 10.33 71.23 0.74 -0.02 16 2 C -0.18 -2.75 6.28 24.72 0.16 -2.60 16 3 C -0.18 -2.82 9.99 21.06 0.21 -2.60 16 4 C -0.04 -0.77 9.95 21.78 0.22 -0.55 16 5 C -0.34 -8.83 6.23 22.76 0.14 -8.69 16 6 C 0.43 13.48 6.93 26.42 0.18 13.66 16 7 O -0.49 -17.37 16.36 -3.55 -0.06 -17.43 16 8 C -0.14 -4.87 4.28 29.85 0.13 -4.75 16 9 C -0.11 -4.15 3.59 29.85 0.11 -4.04 16 10 C 0.44 22.26 7.63 87.65 0.67 22.93 16 11 O -0.63 -35.61 15.70 -3.08 -0.05 -35.66 16 12 N -0.46 -25.11 3.01 -658.91 -1.98 -27.10 16 13 C 0.12 5.68 8.44 127.77 1.08 6.76 16 14 C -0.35 -20.35 9.24 84.04 0.78 -19.58 16 15 H 0.07 4.57 7.45 -2.91 -0.02 4.55 16 16 C 0.00 -0.25 5.04 84.93 0.43 0.18 16 17 N -0.90 -49.19 10.83 21.66 0.23 -48.96 16 18 Si 0.99 43.21 29.57 68.60 2.03 45.24 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 22 S 0.24 4.81 22.35 -56.49 -1.26 3.55 16 23 H 0.08 0.59 8.11 -2.39 -0.02 0.57 16 24 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 26 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 27 H 0.15 3.13 8.02 -2.91 -0.02 3.11 16 28 H 0.10 3.44 8.10 -2.39 -0.02 3.42 16 29 H 0.10 3.47 8.10 -2.39 -0.02 3.45 16 30 H 0.10 3.49 7.37 -2.39 -0.02 3.48 16 31 H 0.09 3.41 8.06 -2.39 -0.02 3.39 16 32 H 0.04 2.03 7.82 -2.39 -0.02 2.01 16 33 H 0.06 2.94 6.80 -2.38 -0.02 2.92 16 34 H 0.06 2.46 6.61 -2.39 -0.02 2.45 16 35 H 0.27 14.02 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -71.25 316.18 4.84 -66.41 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 1.10 Total: 13.24 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 4.83 Total: 0.71 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -1.75 Total: -76.06 kcal Atomic # 8 Polarization: -52.98 SS G_CDS: -0.11 Total: -53.09 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 4.81 SS G_CDS: -1.26 Total: 3.55 kcal Total: -71.25 4.84 -66.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263657693.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.389 kcal (2) G-P(sol) polarization free energy of solvation -71.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds